Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005199 Carpinus fangiana HOM05D003293 ORTHO05D022248 5.7e-80 300.8 150 100.0
Cfa011413 Carpinus fangiana HOM05D003293 ORTHO05D022248 4.8e-34 148.3 121 66.9
Cfa011750 Carpinus fangiana HOM05D003293 ORTHO05D022248 3.2e-30 135.6 89 78.7
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 6.7e-28 127.9 86 80.2
Cfa014115 Carpinus fangiana HOM05D003293 ORTHO05D022248 4.3e-27 125.2 77 84.4
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 7.4e-27 124.4 86 77.9
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 4.8e-18 95.1 86 59.3
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 1.3e-15 87.0 86 53.5
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 3.8e-15 85.5 85 54.1
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 3.8e-15 85.5 91 53.8
RcHm_v2.0_Chr7g0239601 Rosa chinensis HOM05D003293 ORTHO05D013446 1.4e-14 83.6 107 43.0
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 1.9e-14 83.2 85 52.9
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 2.5e-14 82.8 94 51.1
Actinidia24661 Actinidia chinensis HOM05D003293 ORTHO05D005060 3.2e-14 82.4 84 51.2
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 3.2e-14 82.4 84 48.8
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 4.2e-14 82.0 92 50.0
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 5.5e-14 81.6 75 56.0
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 5.5e-14 81.6 84 54.8
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 5.5e-14 81.6 85 51.8
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 5.5e-14 81.6 85 51.8
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 7.2e-14 81.3 75 56.0
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 7.2e-14 81.3 93 48.4
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 9.3e-14 80.9 84 48.8
RcHm_v2.0_Chr1g0350061 Rosa chinensis HOM05D003293 ORTHO05D013446 9.3e-14 80.9 86 51.2
RcHm_v2.0_Chr2g0101951 Rosa chinensis HOM05D003293 ORTHO05D013446 9.3e-14 80.9 86 51.2
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 9.3e-14 80.9 86 51.2
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 1.2e-13 80.5 75 56.0
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 1.2e-13 80.5 84 48.8
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 1.6e-13 80.1 75 54.7
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 1.6e-13 80.1 84 48.8
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 1.6e-13 80.1 86 50.0
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.1e-13 79.7 86 51.2
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.7e-13 79.3 86 51.2
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 2.7e-13 79.3 79 54.4
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 3.6e-13 79.0 75 53.3
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 3.6e-13 79.0 86 50.0
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 3.6e-13 79.0 84 52.4
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 4.6e-13 78.6 84 50.0
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 6.1e-13 78.2 75 52.0
RcHm_v2.0_Chr7g0238791 Rosa chinensis HOM05D003293 ORTHO05D013446 6.1e-13 78.2 86 50.0
RcHm_v2.0_Chr5g0023571 Rosa chinensis HOM05D003293 ORTHO05D022248 7.9e-13 77.8 80 51.2
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 7.9e-13 77.8 75 52.0
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.0e-12 77.4 86 50.0
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 1.0e-12 77.4 86 50.0
RcHm_v2.0_Chr7g0234111 Rosa chinensis HOM05D003293 ORTHO05D013446 1.0e-12 77.4 82 51.2
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 1.4e-12 77.0 84 46.4
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 1.4e-12 77.0 86 50.0
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 1.4e-12 77.0 84 47.6
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 1.8e-12 76.6 90 45.6
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 1.8e-12 76.6 139 37.4
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.8e-12 76.6 84 47.6
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 2.3e-12 76.3 84 48.8
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 2.3e-12 76.3 86 45.3
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 3.9e-12 75.5 77 54.5
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 3.9e-12 75.5 77 54.5
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 3.9e-12 75.5 77 54.5
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 5.1e-12 75.1 75 48.0
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 6.7e-12 74.7 75 53.3
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 6.7e-12 74.7 84 45.2
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 6.7e-12 74.7 139 36.0
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 1.1e-11 73.9 90 43.3
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 1.1e-11 73.9 75 48.0
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 1.5e-11 73.6 75 46.7
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 1.5e-11 73.6 86 46.5
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 2.5e-11 72.8 77 53.2
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 3.3e-11 72.4 84 42.9
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 3.3e-11 72.4 84 44.0
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 4.3e-11 72.0 90 41.1
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 5.7e-11 71.6 75 48.0
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 7.4e-11 71.2 75 46.7
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 9.7e-11 70.9 84 48.8
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 9.7e-11 70.9 84 41.7
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 9.7e-11 70.9 75 50.7
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 9.7e-11 70.9 75 50.7
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 1.7e-10 70.1 84 44.0
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 2.8e-10 69.3 74 43.2
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 2.8e-10 69.3 86 46.5
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 3.7e-10 68.9 85 45.9
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 3.7e-10 68.9 76 51.3
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 6.3e-10 68.2 75 46.7
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 8.2e-10 67.8 75 45.3
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 1.1e-09 67.4 75 45.3
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 1.1e-09 67.4 116 35.3
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.1e-09 67.4 84 42.9
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 1.1e-09 67.4 75 45.3
QL08p009748 Quercus lobata HOM05D003293 ORTHO05D022248 1.1e-09 67.4 91 47.3
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 1.4e-09 67.0 84 41.7
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 1.8e-09 66.6 116 35.3
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 1.8e-09 66.6 66 48.5
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.8e-09 66.6 88 44.3
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 2.4e-09 66.2 75 44.0
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 3.1e-09 65.9 75 48.0
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 4.1e-09 65.5 75 48.0
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 9.1e-09 64.3 116 34.5
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 9.1e-09 64.3 75 42.7
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 9.1e-09 64.3 75 45.3
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 9.1e-09 64.3 91 42.9
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 1.5e-08 63.5 90 41.1
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 2.0e-08 63.2 116 33.6
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 2.6e-08 62.8 90 40.0
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 4.5e-08 62.0 75 45.3
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 5.9e-08 61.6 75 44.0
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 7.7e-08 61.2 75 44.0
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 7.7e-08 61.2 75 44.0
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 1.0e-07 60.8 75 44.0
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 1.0e-07 60.8 84 40.5
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 1.0e-07 60.8 85 38.8
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 1.3e-07 60.5 90 38.9
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 1.3e-07 60.5 75 42.7
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 3.8e-07 58.9 75 42.7
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 3.8e-07 58.9 102 36.3
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 3.8e-07 58.9 75 41.3
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 3.8e-07 58.9 85 38.8
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 6.5e-07 58.2 77 42.9
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 6.5e-07 58.2 86 39.5
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 8.5e-07 57.8 75 40.0
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 8.5e-07 57.8 76 46.1
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 1.1e-06 57.4 75 41.3
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 1.1e-06 57.4 75 40.0
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 2.5e-06 56.2 75 42.7
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 3.2e-06 55.8 84 38.1
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 3.2e-06 55.8 80 40.0
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 3.2e-06 55.8 80 40.0
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 3.2e-06 55.8 75 38.7
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 4.2e-06 55.5 84 41.7
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 4.2e-06 55.5 84 41.7
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 4.2e-06 55.5 84 41.7
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 4.2e-06 55.5 84 41.7
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 4.2e-06 55.5 84 41.7
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 4.2e-06 55.5 75 38.7
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 5.5e-06 55.1 69 47.8
HPP92_020647 Vanilla planifolia HOM05D003293 ORTHO05D022256 5.5e-06 55.1 52 53.8
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 5.5e-06 55.1 75 42.7
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 7.2e-06 54.7 84 40.5
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 7.2e-06 54.7 80 38.8
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 9.4e-06 54.3 84 38.1
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 9.4e-06 54.3 85 34.1


User provided reference genes

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