Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005181 Carpinus fangiana HOM05D005726 ORTHO05D001733 3.2e-59 231.9 145 100.0
Cfa005180 Carpinus fangiana HOM05D005726 ORTHO05D001733 3.3e-48 195.3 135 73.3
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 1.2e-21 107.1 132 48.5
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 2.0e-21 106.3 132 49.2
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 1.6e-18 96.7 133 45.9
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 2.1e-18 96.3 133 44.4
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 2.7e-18 95.9 130 45.4
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 4.3e-16 88.6 133 41.4
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 1.3e-15 87.0 133 43.6
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 2.8e-15 85.9 130 42.3
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 2.8e-15 85.9 130 42.3
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 2.4e-14 82.8 130 40.0
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 9.0e-14 80.9 135 41.5
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 2.0e-13 79.7 132 41.7
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 3.8e-12 75.5 128 40.6
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 2.5e-11 72.8 129 37.2
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 3.2e-11 72.4 79 53.2
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 4.2e-11 72.0 138 38.4
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 9.4e-11 70.9 80 47.5
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 1.2e-10 70.5 135 37.0
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 1.2e-10 70.5 77 49.4
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.1e-10 69.7 130 38.5
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 3.6e-10 68.9 130 37.7
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.0e-09 67.4 129 35.7
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 1.4e-09 67.0 76 46.1
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 3.0e-09 65.9 80 43.8
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 3.0e-09 65.9 71 52.1
Sc15g0004980 Simmondsia chinensis HOM05D003064 ORTHO05D001733 3.9e-09 65.5 79 44.3
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 2.0e-08 63.2 130 35.4
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 3.3e-08 62.4 75 46.7
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 5.7e-08 61.6 93 39.8
Carub.0006s1824 Capsella rubella HOM05D003064 ORTHO05D001733 1.7e-07 60.1 75 48.0
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 1.7e-07 60.1 138 35.5
Cpa.g.sc119.86 Carica papaya HOM05D003064 ORTHO05D001733 2.2e-07 59.7 72 48.6
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 2.2e-07 59.7 76 47.4
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 2.2e-07 59.7 76 47.4
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 2.2e-07 59.7 76 47.4
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 2.2e-07 59.7 84 34.5
Aa31LG1G14330 Aethionema arabicum HOM05D003064 ORTHO05D001733 2.8e-07 59.3 75 45.3
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 2.8e-07 59.3 73 42.5
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 2.8e-07 59.3 73 42.5
MBI05_g33720_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D001733 3.7e-07 58.9 78 42.3
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 3.7e-07 58.9 71 46.5
TPR.G32947 Trifolium pratense HOM05D003064 ORTHO05D001733 3.7e-07 58.9 74 43.2
Atru.chr11.2712 Acer truncatum HOM05D003064 ORTHO05D001733 4.8e-07 58.5 74 43.2
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 4.8e-07 58.5 73 41.1
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 6.3e-07 58.2 84 41.7
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 8.2e-07 57.8 82 43.9
BcaC03g15831 Brassica carinata HOM05D003064 ORTHO05D001733 8.2e-07 57.8 75 45.3
Medtr5g084240 Medicago truncatula HOM05D003064 ORTHO05D001733 8.2e-07 57.8 74 41.9
QL04p001663 Quercus lobata HOM05D003064 ORTHO05D001733 8.2e-07 57.8 82 43.9
BcaB01g04845 Brassica carinata HOM05D003064 ORTHO05D001733 1.1e-06 57.4 75 45.3
BcaC04g19388 Brassica carinata HOM05D003064 ORTHO05D001733 1.1e-06 57.4 75 46.7
C02p35760 Brassica napus HOM05D003064 ORTHO05D001733 1.1e-06 57.4 75 46.7
C09p56240 Brassica napus HOM05D003064 ORTHO05D001733 1.1e-06 57.4 75 46.7
BolC9t58493H Brassica oleracea HOM05D003064 ORTHO05D001733 1.1e-06 57.4 75 46.7
MD11G1012600 Malus domestica HOM05D003064 ORTHO05D001733 1.1e-06 57.4 71 45.1
Oeu032780.1 Olea europaea HOM05D003064 ORTHO05D001733 1.1e-06 57.4 82 43.9
BcaB01g04824 Brassica carinata HOM05D003064 ORTHO05D001733 1.4e-06 57.0 75 45.3
BcaC04g19393 Brassica carinata HOM05D003064 ORTHO05D001733 1.4e-06 57.0 75 46.7
BolC3t13597H Brassica oleracea HOM05D003064 ORTHO05D001733 1.4e-06 57.0 75 45.3
BolC9t58489H Brassica oleracea HOM05D003064 ORTHO05D001733 1.4e-06 57.0 75 46.7
BraA03t10285Z Brassica rapa HOM05D003064 ORTHO05D001733 1.4e-06 57.0 75 45.3
Glyma.02G258600 Glycine max HOM05D003064 ORTHO05D001733 1.4e-06 57.0 73 41.1
Glyma.14G053000 Glycine max HOM05D003064 ORTHO05D001733 1.4e-06 57.0 73 41.1
LjContig00357g0022496 Lotus japonicus HOM05D003064 ORTHO05D001733 1.4e-06 57.0 73 38.4
Sp6g24510 Schrenkiella parvula HOM05D003064 ORTHO05D001733 1.4e-06 57.0 75 45.3
VMungo0647G0318 Vigna mungo HOM05D003064 ORTHO05D001733 1.4e-06 57.0 73 41.1
A03p09690 Brassica napus HOM05D003064 ORTHO05D001733 1.8e-06 56.6 75 45.3
A10p19870 Brassica napus HOM05D003064 ORTHO05D001733 1.8e-06 56.6 75 46.7
BraA10t44062Z Brassica rapa HOM05D003064 ORTHO05D001733 1.8e-06 56.6 75 46.7
AT5G19875 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 2.4e-06 56.2 75 45.3
FAN21G3633 Fragaria x ananassa HOM05D003064 ORTHO05D001733 2.4e-06 56.2 73 43.8
Medtr5g084250 Medicago truncatula HOM05D003064 ORTHO05D001733 2.4e-06 56.2 74 37.8
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 3.1e-06 55.8 78 42.3
AL6G31410 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 3.1e-06 55.8 75 45.3
FvH4_3g44730 Fragaria vesca HOM05D003064 ORTHO05D001733 3.1e-06 55.8 71 45.1
FAN25G3035 Fragaria x ananassa HOM05D003064 ORTHO05D001733 3.1e-06 55.8 71 45.1
Lsat_1_v5_gn_6_50860 Lactuca sativa HOM05D003064 ORTHO05D001733 3.1e-06 55.8 73 42.5
MD03G1010800 Malus domestica HOM05D003064 ORTHO05D001733 3.1e-06 55.8 71 45.1
Potri.003G216100 Populus trichocarpa HOM05D003064 ORTHO05D001733 3.1e-06 55.8 72 41.7
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 4.1e-06 55.5 77 42.9
Eucgr.J01788 Eucalyptus grandis HOM05D003064 ORTHO05D001733 4.1e-06 55.5 73 42.5
FAN16G3363 Fragaria x ananassa HOM05D003064 ORTHO05D001733 4.1e-06 55.5 71 45.1
arahy.Tifrunner.gnm1.ann1.ZL4T1U Arachis hypogaea HOM05D003064 ORTHO05D001733 5.3e-06 55.1 74 37.8
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 5.3e-06 55.1 76 42.1
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 5.3e-06 55.1 76 44.7
MSTRG.17073 Avicennia marina HOM05D003064 ORTHO05D001733 6.9e-06 54.7 74 39.2
BcaB08g36562 Brassica carinata HOM05D003064 ORTHO05D001733 6.9e-06 54.7 75 46.7
Oeu060706.1 Olea europaea HOM05D003064 ORTHO05D001733 6.9e-06 54.7 75 42.7
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 6.9e-06 54.7 70 42.9
PGR102G0542 Punica granatum HOM05D003064 ORTHO05D001733 9.1e-06 54.3 98 39.8


User provided reference genes

Program Settings