Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005180 Carpinus fangiana HOM05D005726 ORTHO05D001733 2.5e-62 241.9 117 100.0
Cfa005181 Carpinus fangiana HOM05D005726 ORTHO05D001733 5.3e-49 197.6 135 73.3
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 6.1e-29 131.0 107 62.6
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.0e-28 130.2 107 63.6
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 4.9e-26 121.3 108 59.3
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.9e-25 119.4 108 58.3
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 1.6e-24 116.3 108 56.5
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 6.6e-23 110.9 108 53.7
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.5e-22 109.8 108 55.6
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 1.5e-22 109.8 108 55.6
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 1.2e-21 106.7 115 53.9
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.2e-21 106.7 108 52.8
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 8.0e-21 104.0 110 52.7
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 2.3e-20 102.4 107 54.2
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 7.5e-19 97.4 106 50.9
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 7.5e-19 97.4 107 49.5
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 4.9e-18 94.7 113 48.7
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 1.1e-17 93.6 111 48.6
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.2e-16 90.1 107 45.8
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 2.7e-16 89.0 94 54.3
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 2.7e-16 89.0 108 46.3
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.0e-15 87.0 108 47.2
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.7e-15 86.3 108 46.3
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 6.6e-15 84.3 108 46.3
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 4.3e-14 81.6 113 45.1
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 7.3e-14 80.9 121 40.5
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.2e-13 80.1 107 42.1
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 2.1e-13 79.3 107 43.0
Sc15g0004980 Simmondsia chinensis HOM05D003064 ORTHO05D001733 1.8e-12 76.3 107 41.1
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 3.1e-12 75.5 109 42.2
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 4.0e-12 75.1 109 44.0
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 4.0e-12 75.1 109 37.6
LjContig00357g0022496 Lotus japonicus HOM05D003064 ORTHO05D001733 2.0e-11 72.8 104 38.5
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 2.6e-11 72.4 89 46.1
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 3.4e-11 72.0 107 43.0
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 3.4e-11 72.0 98 45.9
Sed0019554 Sechium edule HOM05D005726 ORTHO05D001733 7.5e-11 70.9 100 45.0
VMungo0647G0318 Vigna mungo HOM05D003064 ORTHO05D001733 9.9e-11 70.5 108 35.2
Glyma.14G053000 Glycine max HOM05D003064 ORTHO05D001733 1.7e-10 69.7 108 35.2
Glyma.02G258600 Glycine max HOM05D003064 ORTHO05D001733 2.2e-10 69.3 108 35.2
ClCG02G011420 Citrullus lanatus HOM05D005726 ORTHO05D001733 2.9e-10 68.9 102 49.0
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 3.7e-10 68.6 104 37.5
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 4.9e-10 68.2 112 40.2
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 4.9e-10 68.2 104 37.5
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 4.9e-10 68.2 112 39.3
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 6.4e-10 67.8 107 40.2
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 6.4e-10 67.8 104 36.5
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 6.4e-10 67.8 104 36.5
TPR.G32947 Trifolium pratense HOM05D003064 ORTHO05D001733 6.4e-10 67.8 108 35.2
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 1.4e-09 66.6 103 35.0
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 1.4e-09 66.6 114 39.5
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 1.9e-09 66.2 113 40.7
Medtr5g084240 Medicago truncatula HOM05D003064 ORTHO05D001733 1.9e-09 66.2 108 36.1
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 1.9e-09 66.2 108 36.1
Sed0014638 Sechium edule HOM05D005726 ORTHO05D001733 2.4e-09 65.9 100 45.0
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 3.2e-09 65.5 103 40.8
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 3.2e-09 65.5 105 33.3
Cpa.g.sc119.86 Carica papaya HOM05D003064 ORTHO05D001733 5.4e-09 64.7 108 37.0
MBI05_g33720_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D001733 5.4e-09 64.7 82 42.7
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 7.1e-09 64.3 114 39.5
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 7.1e-09 64.3 103 39.8
Phvul.008G217700 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 7.1e-09 64.3 108 32.4
QL01p010327 Quercus lobata HOM05D003064 ORTHO05D001733 7.1e-09 64.3 112 33.9
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 7.1e-09 64.3 106 34.0
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 7.1e-09 64.3 106 34.0
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 7.1e-09 64.3 111 37.8
CsaV3_2G015680 Cucumis sativus L. HOM05D005726 ORTHO05D001733 9.2e-09 63.9 101 45.5
FAN21G3633 Fragaria x ananassa HOM05D003064 ORTHO05D001733 9.2e-09 63.9 108 34.3
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 9.2e-09 63.9 105 40.0
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 9.2e-09 63.9 105 40.0
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 9.2e-09 63.9 105 40.0
MELO3C020779.2 Cucumis melo HOM05D005726 ORTHO05D001733 1.2e-08 63.5 100 46.0
Potri.003G216100 Populus trichocarpa HOM05D003064 ORTHO05D001733 1.2e-08 63.5 111 34.2
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 1.6e-08 63.2 105 37.1
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.6e-08 63.2 103 38.8
MD11G1012600 Malus domestica HOM05D003064 ORTHO05D001733 1.6e-08 63.2 108 33.3
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 1.6e-08 63.2 104 31.7
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 1.6e-08 63.2 110 39.1
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 2.1e-08 62.8 104 31.7
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 2.7e-08 62.4 116 36.2
arahy.Tifrunner.gnm1.ann1.GF7MHW Arachis hypogaea HOM05D003064 ORTHO05D001733 4.6e-08 61.6 96 33.3
Carub.0006s1824 Capsella rubella HOM05D003064 ORTHO05D001733 4.6e-08 61.6 112 38.4
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 4.6e-08 61.6 114 38.6
Lsat_1_v5_gn_6_50860 Lactuca sativa HOM05D003064 ORTHO05D001733 4.6e-08 61.6 105 34.3
Medtr5g084250 Medicago truncatula HOM05D003064 ORTHO05D001733 4.6e-08 61.6 104 32.7
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 4.6e-08 61.6 106 36.8
FvH4_3g44730 Fragaria vesca HOM05D003064 ORTHO05D001733 6.0e-08 61.2 108 33.3
FAN25G3035 Fragaria x ananassa HOM05D003064 ORTHO05D001733 6.0e-08 61.2 108 33.3
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 7.8e-08 60.8 90 42.2
arahy.Tifrunner.gnm1.ann1.ZL4T1U Arachis hypogaea HOM05D003064 ORTHO05D001733 7.8e-08 60.8 96 33.3
CiPaw.13G172000 Carya illinoinensis HOM05D003064 ORTHO05D001733 7.8e-08 60.8 108 31.5
FAN16G3363 Fragaria x ananassa HOM05D003064 ORTHO05D001733 7.8e-08 60.8 108 33.3
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 7.8e-08 60.8 102 35.3
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.0e-07 60.5 105 37.1
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.0e-07 60.5 103 35.9
MD03G1010800 Malus domestica HOM05D003064 ORTHO05D001733 1.0e-07 60.5 108 32.4
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 1.0e-07 60.5 111 36.9
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 1.0e-07 60.5 99 40.4
AT5G19875 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 1.3e-07 60.1 102 36.3
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 1.3e-07 60.1 80 46.2
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 1.3e-07 60.1 103 35.0
Sed0005920 Sechium edule HOM05D003064 ORTHO05D001733 1.7e-07 59.7 105 35.2
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 1.7e-07 59.7 121 38.8
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 2.3e-07 59.3 112 33.9
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 2.3e-07 59.3 105 36.2
BcaB01g04845 Brassica carinata HOM05D003064 ORTHO05D001733 3.0e-07 58.9 102 36.3
ClCG09G003670 Citrullus lanatus HOM05D003064 ORTHO05D001733 3.0e-07 58.9 105 36.2
Atru.chr11.2712 Acer truncatum HOM05D003064 ORTHO05D001733 3.9e-07 58.5 104 33.7
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 3.9e-07 58.5 110 35.5
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 3.9e-07 58.5 112 33.9
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 3.9e-07 58.5 112 33.9
Lalb_Chr10g0105471 Lupinus albus HOM05D003064 ORTHO05D001733 3.9e-07 58.5 108 31.5
VMungo1127G1792 Vigna mungo HOM05D005726 ORTHO05D001733 3.9e-07 58.5 99 38.4
BcaB01g04824 Brassica carinata HOM05D003064 ORTHO05D001733 5.1e-07 58.2 102 36.3
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 5.1e-07 58.2 113 33.6
BolC3t13597H Brassica oleracea HOM05D003064 ORTHO05D001733 5.1e-07 58.2 102 36.3
BraA03t10285Z Brassica rapa HOM05D003064 ORTHO05D001733 5.1e-07 58.2 102 36.3
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 5.1e-07 58.2 113 33.6
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 5.1e-07 58.2 120 31.7
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 5.1e-07 58.2 113 37.2
A03p09690 Brassica napus HOM05D003064 ORTHO05D001733 6.6e-07 57.8 102 36.3
C02p35760 Brassica napus HOM05D003064 ORTHO05D001733 6.6e-07 57.8 102 36.3
Haze_03274 Corylus avellana HOM05D003064 ORTHO05D001733 6.6e-07 57.8 105 35.2
Eucgr.J01788 Eucalyptus grandis HOM05D003064 ORTHO05D001733 6.6e-07 57.8 106 34.0
HanXRQChr02g0056621 Helianthus annuus HOM05D003064 ORTHO05D001733 6.6e-07 57.8 113 32.7
Rhsim01G0185600 Rhododendron simsii HOM05D003064 ORTHO05D001733 6.6e-07 57.8 112 31.2
Aa31LG1G14330 Aethionema arabicum HOM05D003064 ORTHO05D001733 8.6e-07 57.4 101 33.7
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 8.6e-07 57.4 103 34.0
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 8.6e-07 57.4 114 38.6
AL6G31410 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 1.1e-06 57.0 102 35.3
BcaC03g15831 Brassica carinata HOM05D003064 ORTHO05D001733 1.1e-06 57.0 102 35.3
Cfa010704 Carpinus fangiana HOM05D003064 ORTHO05D001733 1.5e-06 56.6 105 35.2
MSTRG.17073 Avicennia marina HOM05D003064 ORTHO05D001733 1.9e-06 56.2 107 36.4
BcaC04g19393 Brassica carinata HOM05D003064 ORTHO05D001733 1.9e-06 56.2 102 36.3
BolC9t58489H Brassica oleracea HOM05D003064 ORTHO05D001733 1.9e-06 56.2 102 36.3
Haze_22989 Corylus avellana HOM05D003064 ORTHO05D001733 1.9e-06 56.2 74 41.9
BcaC04g19388 Brassica carinata HOM05D003064 ORTHO05D001733 2.5e-06 55.8 101 36.6
A10p19870 Brassica napus HOM05D003064 ORTHO05D001733 2.5e-06 55.8 102 36.3
C09p56240 Brassica napus HOM05D003064 ORTHO05D001733 2.5e-06 55.8 101 36.6
BolC9t58493H Brassica oleracea HOM05D003064 ORTHO05D001733 2.5e-06 55.8 101 36.6
BraA10t44062Z Brassica rapa HOM05D003064 ORTHO05D001733 2.5e-06 55.8 102 36.3
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 2.5e-06 55.8 106 32.1
MBI05_g46324_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 2.5e-06 55.8 102 35.3
PSO339G6128 Papaver somniferum HOM05D003064 ORTHO05D001733 2.5e-06 55.8 106 33.0
PSO384G3054 Papaver somniferum HOM05D003064 ORTHO05D001733 2.5e-06 55.8 106 33.0
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 2.5e-06 55.8 113 31.0
CsaV3_7G031520 Cucumis sativus L. HOM05D003064 ORTHO05D001733 3.3e-06 55.5 104 32.7
Aqoxy1G00039 Aquilegia oxysepala HOM05D003064 ORTHO05D001733 4.3e-06 55.1 106 33.0
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 4.3e-06 55.1 110 30.0
Phvul.009G000100 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 4.3e-06 55.1 64 50.0
Sp6g24510 Schrenkiella parvula HOM05D003064 ORTHO05D001733 4.3e-06 55.1 101 35.6
BcaC03g17246 Brassica carinata HOM05D005726 ORTHO05D001733 5.6e-06 54.7 105 34.3
A02p33660 Brassica napus HOM05D005726 ORTHO05D001733 5.6e-06 54.7 105 34.3
BolC2t11266H Brassica oleracea HOM05D005726 ORTHO05D001733 5.6e-06 54.7 105 34.3
BraA02t08386Z Brassica rapa HOM05D005726 ORTHO05D001733 5.6e-06 54.7 105 34.3
Duzib168G1332 Durio zibethinus HOM05D003064 ORTHO05D001733 5.6e-06 54.7 100 37.0
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 5.6e-06 54.7 91 39.6
PGR042G3858 Punica granatum HOM05D005726 ORTHO05D001733 5.6e-06 54.7 120 33.3
QL04p001663 Quercus lobata HOM05D003064 ORTHO05D001733 5.6e-06 54.7 80 41.2
C02p51810 Brassica napus HOM05D005726 ORTHO05D001733 7.3e-06 54.3 105 34.3
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 7.3e-06 54.3 106 34.0
Glyma.15G267900 Glycine max HOM05D003064 ORTHO05D001733 7.3e-06 54.3 108 33.3
Manes.03G089000 Manihot esculenta HOM05D003064 ORTHO05D001733 7.3e-06 54.3 110 29.1
ATR0598G068 Amborella trichopoda HOM05D003064 ORTHO05D001733 9.5e-06 53.9 104 32.7
Potri.001G009200 Populus trichocarpa HOM05D003064 ORTHO05D001733 9.5e-06 53.9 115 31.3


User provided reference genes

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