Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 2.0e-141 505.8 260 100.0
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 3.1e-121 438.7 263 83.3
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 7.1e-118 427.6 249 84.7
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 7.8e-117 424.1 264 80.3
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 1.7e-116 422.9 264 79.9
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.7e-116 422.9 248 82.7
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 6.6e-116 421.0 266 81.2
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 6.6e-116 421.0 266 80.1
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.1e-115 420.2 263 79.1
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 4.3e-115 418.3 266 80.5
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 5.6e-115 417.9 266 78.6
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 5.6e-115 417.9 266 79.3
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 7.3e-115 417.5 263 79.1
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 2.1e-114 416.0 266 80.1
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 6.2e-114 414.5 266 77.1
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 3.1e-113 412.1 247 81.4
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 8.9e-113 410.6 260 78.8
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 3.4e-112 408.7 250 80.0
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 1.7e-111 406.4 266 75.2
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 2.2e-111 406.0 249 79.5
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 2.9e-111 405.6 260 79.6
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 8.4e-111 404.1 252 79.0
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.4e-110 403.3 252 79.0
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.9e-110 402.9 246 80.5
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.2e-110 402.1 266 75.9
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 4.1e-110 401.7 268 74.3
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.6e-109 399.8 250 78.0
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.6e-109 399.8 266 76.3
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 2.1e-109 399.4 246 78.9
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 2.7e-109 399.1 267 73.0
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 4.6e-109 398.3 250 79.2
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 6.0e-109 397.9 260 75.8
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 6.0e-109 397.9 266 77.1
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 6.0e-109 397.9 248 79.4
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 7.8e-109 397.5 246 78.5
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 7.8e-109 397.5 258 79.1
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.0e-108 397.1 266 76.3
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 1.3e-108 396.7 260 75.8
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 1.7e-108 396.4 255 77.3
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 1.7e-108 396.4 248 79.0
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 2.3e-108 396.0 246 79.7
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 3.0e-108 395.6 266 75.9
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 3.0e-108 395.6 256 75.4
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 5.1e-108 394.8 254 76.4
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 6.6e-108 394.4 250 78.8
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 8.6e-108 394.0 247 78.1
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 1.5e-107 393.3 303 69.3
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 1.9e-107 392.9 243 77.4
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 3.3e-107 392.1 248 78.6
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 4.3e-107 391.7 276 72.8
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 4.3e-107 391.7 244 78.3
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 5.6e-107 391.3 266 74.8
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 7.3e-107 391.0 245 76.7
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 1.6e-106 389.8 247 76.9
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.6e-106 389.8 262 74.0
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 3.6e-106 388.7 247 75.3
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 8.1e-106 387.5 252 77.0
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 8.1e-106 387.5 276 72.8
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 1.1e-105 387.1 229 82.5
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 1.4e-105 386.7 245 80.0
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 2.4e-105 386.0 235 80.4
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 3.1e-105 385.6 260 72.7
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 6.9e-105 384.4 248 77.0
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 8.9e-105 384.0 254 74.4
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 2.6e-104 382.5 258 74.0
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 3.4e-104 382.1 230 82.2
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 3.4e-104 382.1 254 78.0
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 9.9e-104 380.6 262 72.9
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.9e-103 379.0 268 73.9
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.9e-103 378.3 267 71.9
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 1.4e-102 376.7 234 79.9
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 3.2e-102 375.6 243 74.9
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 3.2e-102 375.6 248 74.2
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 4.2e-102 375.2 267 70.8
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 7.1e-102 374.4 239 75.7
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 7.8e-101 370.9 341 58.1
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 7.8e-101 370.9 247 73.3
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 1.0e-100 370.5 237 78.9
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.3e-100 370.2 267 70.0
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 3.9e-100 368.6 245 73.5
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 3.9e-100 368.6 234 77.8
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 3.9e-100 368.6 244 74.2
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 6.6e-100 367.9 248 73.8
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.1e-99 367.1 325 61.5
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 1.5e-99 366.7 245 71.4
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 2.5e-99 365.9 245 73.1
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 7.3e-99 364.4 267 69.7
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 9.6e-99 364.0 266 71.8
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.3e-98 363.6 250 72.0
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.6e-98 363.2 248 70.2
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 6.2e-98 361.3 245 73.1
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 8.1e-98 360.9 257 69.3
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 1.4e-97 360.1 247 70.4
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 2.4e-97 359.4 248 69.8
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 3.1e-97 359.0 215 80.9
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 6.9e-97 357.8 301 62.8
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 9.0e-97 357.5 267 65.9
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.5e-96 356.7 250 70.4
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 3.4e-96 355.5 267 67.0
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 3.4e-96 355.5 267 65.5
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 5.8e-96 354.8 257 67.7
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 9.9e-96 354.0 250 72.0
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.3e-95 353.6 213 81.2
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 3.8e-95 352.1 258 68.6
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 4.9e-95 351.7 258 68.6
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 4.9e-95 351.7 267 64.8
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 4.9e-95 351.7 271 65.7
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 4.9e-95 351.7 246 70.7
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 6.4e-95 351.3 213 80.8
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 8.4e-95 350.9 271 65.7
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 1.4e-94 350.1 213 80.8
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.4e-94 349.4 248 66.9
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 2.4e-94 349.4 267 64.4
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 4.2e-94 348.6 267 64.4
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 2.1e-93 346.3 265 65.3
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 2.7e-93 345.9 247 66.0
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 4.6e-93 345.1 247 68.0
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 4.3e-91 338.6 227 74.9
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.4e-89 333.6 250 68.0
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 3.1e-89 332.4 260 65.4
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 3.1e-89 332.4 275 66.5
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 4.0e-89 332.0 260 67.7
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 6.9e-89 331.3 247 66.4
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 1.2e-88 330.5 212 77.8
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 5.8e-88 328.2 246 67.9
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 1.9e-86 323.2 253 65.6
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.2e-85 320.5 259 63.3
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 5.1e-84 315.1 246 63.4
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.5e-83 313.5 245 66.9
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 4.3e-83 312.0 266 63.9
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 3.7e-82 308.9 198 76.3
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.4e-81 306.2 305 55.1
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 3.4e-80 302.4 237 63.7
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 5.8e-80 301.6 204 71.6
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.2e-78 295.8 206 70.4
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 2.1e-77 293.1 184 79.9
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.9e-76 288.9 243 59.3
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 8.7e-76 287.7 196 77.6
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 7.4e-75 284.6 243 58.4
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 2.0e-72 276.6 247 58.7
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 8.5e-71 271.2 181 72.4
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.4e-70 270.4 234 56.8
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 1.2e-69 267.3 243 55.6
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 3.9e-68 262.3 201 64.2
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 3.3e-67 259.2 252 52.4
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 5.7e-67 258.5 245 55.5
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 9.1e-65 251.1 143 84.6
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 4.6e-61 238.8 147 82.3
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.8e-58 228.8 207 62.3
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.4e-54 217.2 194 59.3
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 2.5e-54 216.5 244 48.0
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 4.2e-54 215.7 234 47.9
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.0e-47 194.5 166 62.7
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.2e-43 181.0 104 78.8
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.5e-43 180.6 122 77.0
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 3.8e-39 166.0 105 81.9
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 3.2e-38 162.9 148 64.9
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.1e-37 160.2 100 82.0
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 1.3e-34 151.0 99 83.8
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 8.6e-31 138.3 243 37.4
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 4.0e-28 129.4 118 57.6
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 4.0e-28 129.4 118 57.6
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.8e-26 123.2 158 49.4
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 7.8e-24 115.2 158 42.4
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 5.6e-22 109.0 82 67.1
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 7.3e-22 108.6 66 74.2
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 2.9e-18 96.7 66 60.6
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.1e-17 92.8 68 67.6
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.0e-15 86.7 64 65.6
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.5e-14 83.6 85 52.9
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 5.6e-14 82.4 98 44.9
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.6e-08 64.3 47 53.2
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 1.3e-07 61.2 191 27.7
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 9.5e-06 55.1 35 74.3


User provided reference genes

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