Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 0.0e+00 1605.1 1098 100.0
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 0.0e+00 1489.2 1147 90.7
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 0.0e+00 1100.9 1138 68.5
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 0.0e+00 1092.0 1117 76.1
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 2.4e-252 876.3 1140 62.4
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 8.7e-226 788.1 1110 62.2
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 3.1e-223 779.6 1082 64.8
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 3.9e-218 762.7 1054 64.6
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 2.8e-216 756.5 1110 64.0
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 1.4e-215 754.2 1051 66.7
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.4e-215 753.4 1106 64.1
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 6.9e-215 751.9 1106 63.1
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 2.0e-214 750.4 1120 63.3
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 6.5e-213 745.3 1109 63.5
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 1.6e-211 740.7 1127 61.6
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 1.3e-210 737.6 1120 61.2
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 7.4e-209 731.9 1104 62.8
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 1.3e-208 731.1 1122 61.1
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 2.8e-208 729.9 1144 61.5
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 6.5e-205 718.8 1108 61.4
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 8.5e-205 718.4 1112 57.0
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 3.3e-201 706.4 1121 62.4
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 5.7e-201 705.7 1122 55.1
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 6.9e-199 698.7 1129 54.7
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 1.2e-198 698.0 1149 59.4
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 2.0e-198 697.2 1163 49.2
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 5.9e-198 695.7 1146 60.3
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 1.0e-194 684.9 1141 60.6
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 5.3e-191 672.5 1107 61.9
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 2.6e-190 670.2 1123 60.5
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 3.4e-190 669.8 1121 60.7
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 4.5e-190 669.5 1123 60.6
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.7e-189 667.5 1106 62.6
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 6.5e-189 665.6 1107 61.9
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 6.5e-189 665.6 1121 60.6
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 5.5e-188 662.5 1121 60.5
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.4e-186 657.9 1172 58.1
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 3.9e-186 656.4 1171 58.0
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 9.7e-185 651.7 1124 60.3
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 3.1e-183 646.7 1140 60.2
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 4.1e-183 646.4 1031 62.4
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 4.1e-183 646.4 1135 59.6
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 9.1e-183 645.2 1105 61.1
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 2.6e-182 643.7 1120 59.0
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 1.0e-181 641.7 1192 50.3
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 1.9e-180 637.5 1120 53.1
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 3.2e-180 636.7 1114 60.0
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 7.2e-180 635.6 1103 60.4
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 4.7e-179 632.9 1124 57.9
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 1.0e-178 631.7 1110 53.3
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 2.0e-177 627.5 1107 53.5
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 9.1e-175 618.6 1194 49.9
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 3.2e-172 610.1 1133 58.2
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 3.7e-168 596.7 1118 58.1
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 8.3e-168 595.5 1126 58.2
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 8.3e-168 595.5 1052 53.9
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 1.7e-165 587.8 1122 53.3
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 5.2e-162 576.2 1089 59.1
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 2.0e-161 574.3 1102 56.9
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 4.4e-161 573.2 1068 56.8
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 4.1e-159 566.6 1125 56.1
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 1.9e-156 557.8 956 50.0
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 4.7e-155 553.1 1110 58.2
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 1.8e-154 551.2 1087 56.4
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 2.3e-154 550.8 1141 56.0
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 3.0e-154 550.4 1082 56.2
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 4.0e-154 550.1 1124 54.4
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 1.5e-153 548.1 1097 57.4
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 2.0e-153 547.7 1136 55.4
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 2.0e-153 547.7 1113 56.1
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 3.4e-153 547.0 1092 57.9
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 2.9e-152 543.9 1160 55.9
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 1.0e-149 535.4 715 76.2
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 2.3e-149 534.3 1123 53.3
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 9.8e-145 518.8 1096 55.3
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 1.2e-142 511.9 988 57.1
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 3.9e-141 506.9 1186 53.5
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 3.9e-141 506.9 1110 54.5
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 1.5e-140 505.0 1110 49.5
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 4.7e-139 500.0 1216 52.1
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 2.3e-138 497.7 1143 53.9
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 5.2e-138 496.5 1122 53.9
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 6.4e-136 489.6 1154 52.5
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 2.7e-134 484.2 889 56.2
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 2.7e-134 484.2 1158 52.0
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 1.7e-133 481.5 1169 52.1
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 9.5e-132 475.7 1168 51.1
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 1.2e-131 475.3 606 72.9
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.4e-130 471.1 752 69.5
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 1.7e-128 464.9 714 58.1
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 2.9e-128 464.2 1113 53.5
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 3.9e-125 453.8 914 59.8
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 7.8e-118 429.5 1018 56.4
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 5.3e-114 416.8 710 60.8
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 8.4e-112 409.5 709 62.8
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 2.4e-111 407.9 934 52.2
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 1.7e-83 315.5 259 58.7
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 5.3e-66 257.3 169 74.0
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 2.2e-64 251.9 266 50.0
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 1.3e-59 236.1 651 47.6
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.7e-56 225.7 693 50.6
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 1.8e-53 215.7 742 43.4
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 3.7e-51 208.0 700 59.3
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 2.3e-48 198.7 251 87.6
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.9e-47 195.7 707 47.2
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.2e-44 186.4 123 73.2
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.4e-42 179.5 253 43.9
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 1.2e-41 176.4 295 65.1
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.0e-40 173.3 283 38.5
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 1.3e-40 172.9 315 69.8
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 3.3e-39 168.3 289 72.0
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 7.5e-36 157.1 128 66.4
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 2.2e-35 155.6 113 66.4
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.0e-32 146.7 242 36.4
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.2e-30 139.8 146 49.3
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 1.2e-30 139.8 288 33.3
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.6e-30 139.4 1015 43.3
QL11p047023 Quercus lobata HOM05D005996 ORTHO05D007507 2.8e-30 138.7 132 62.9
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 6.8e-29 134.0 107 60.7
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 3.7e-27 128.3 109 58.7
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 4.1e-26 124.8 666 52.0
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.2e-22 113.2 94 56.4
Ciclev10028828m.g Citrus clementina HOM05D005996 ORTHO05D007507 5.8e-20 104.4 366 33.9
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 3.5e-17 95.1 94 74.5
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 3.1e-13 82.0 214 29.4
MBI09_g46961_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 1.3e-06 60.1 40 67.5


User provided reference genes

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