Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 8.0e-202 706.8 347 100.0
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 1.6e-181 639.4 346 89.3
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 1.2e-176 623.2 396 82.6
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 8.7e-172 607.1 349 85.1
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 2.5e-171 605.5 350 84.3
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 3.3e-171 605.1 345 85.2
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 1.6e-170 602.8 350 84.9
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 2.8e-170 602.1 349 84.0
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 4.8e-170 601.3 349 84.2
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 7.6e-168 594.0 350 84.6
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 9.9e-168 593.6 350 84.6
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 4.2e-166 588.2 342 83.6
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 1.2e-165 586.6 341 83.0
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 1.2e-165 586.6 353 82.2
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 1.6e-165 586.3 342 85.1
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 1.6e-165 586.3 354 81.6
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 1.8e-164 582.8 303 95.0
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 1.8e-164 582.8 350 82.6
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 1.8e-164 582.8 374 78.3
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 6.7e-164 580.9 351 80.9
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 1.1e-163 580.1 350 80.9
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.5e-163 579.7 349 81.7
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 2.5e-163 578.9 356 80.9
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 4.3e-163 578.2 350 80.6
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 5.6e-163 577.8 348 80.7
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 2.8e-162 575.5 350 80.3
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 6.2e-162 574.3 350 78.6
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 8.1e-162 573.9 384 75.5
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 4.0e-161 571.6 349 80.5
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 5.3e-161 571.2 350 80.3
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 9.0e-161 570.5 354 81.9
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 2.2e-159 565.8 347 81.3
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 4.9e-159 564.7 351 78.6
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 4.2e-158 561.6 354 79.4
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 5.5e-158 561.2 350 79.1
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 1.6e-157 559.7 356 77.2
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 1.6e-157 559.7 356 77.2
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 7.9e-157 557.4 359 78.0
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 8.7e-156 553.9 350 78.0
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.5e-155 553.1 302 88.4
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 1.5e-155 553.1 351 77.8
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 9.6e-155 550.4 302 87.7
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 2.8e-154 548.9 353 76.2
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 8.2e-154 547.4 305 85.9
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 1.4e-153 546.6 336 80.1
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 2.4e-153 545.8 350 75.7
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 2.4e-153 545.8 350 77.1
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 5.3e-153 544.7 353 75.4
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 1.5e-152 543.1 353 75.4
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 2.0e-152 542.7 302 88.1
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 3.4e-152 542.0 345 77.1
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 4.5e-152 541.6 354 75.7
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 7.6e-152 540.8 317 85.2
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 1.0e-151 540.4 325 80.9
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 8.4e-151 537.3 348 75.6
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.4e-150 536.6 357 74.5
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 1.9e-150 536.2 349 76.2
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 7.1e-150 534.3 357 74.8
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 7.1e-150 534.3 348 76.1
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.6e-149 533.1 353 76.2
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 3.5e-149 531.9 304 84.2
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.0e-148 530.4 342 77.2
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 1.3e-148 530.0 348 75.3
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 2.3e-148 529.3 307 82.4
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 5.1e-148 528.1 318 80.2
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 5.1e-148 528.1 303 84.8
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 5.7e-147 524.6 342 76.0
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 5.7e-147 524.6 342 76.0
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 7.4e-147 524.2 348 73.6
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 7.4e-147 524.2 383 70.5
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 2.2e-146 522.7 348 74.1
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.4e-145 520.0 391 68.5
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.4e-145 520.0 303 83.8
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 9.0e-145 517.3 325 76.6
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 5.0e-143 511.5 325 77.5
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 3.2e-142 508.8 341 75.7
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 4.2e-142 508.4 311 78.8
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 5.1e-140 501.5 324 77.8
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 6.9e-137 491.1 313 75.1
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 3.4e-136 488.8 350 71.4
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 2.5e-134 482.6 360 70.8
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 2.6e-131 472.6 333 69.1
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 7.4e-131 471.1 345 68.4
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.7e-130 469.9 299 77.6
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 1.1e-129 467.2 281 78.6
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.2e-125 453.8 305 72.1
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 5.3e-121 438.3 303 67.7
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 5.3e-121 438.3 303 67.7
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 1.0e-119 434.1 302 67.5
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 1.3e-119 433.7 304 68.4
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 8.0e-117 424.5 286 72.0
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 1.8e-116 423.3 353 63.5
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 6.8e-116 421.4 252 83.3
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 2.5e-110 402.9 269 74.3
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 2.4e-105 386.3 280 67.1
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 4.5e-96 355.5 312 55.1
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 5.8e-91 338.6 242 71.9
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 2.4e-89 333.2 345 53.0
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 7.0e-89 331.6 373 52.3
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 3.5e-88 329.3 306 51.3
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 1.1e-86 324.3 246 68.7
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.6e-85 320.5 184 83.2
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 3.7e-82 309.3 310 51.0
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.4e-76 290.8 246 64.2
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 4.0e-76 289.3 241 59.3
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 1.4e-73 280.8 205 70.2
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.6e-61 240.7 124 89.5
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.6e-61 240.7 124 89.5
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 2.1e-53 213.8 182 63.7
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 3.6e-53 213.0 122 77.9
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 1.1e-52 211.5 122 77.0
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 4.5e-51 206.1 137 75.2
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 2.1e-40 170.6 103 73.8
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 7.4e-38 162.2 297 37.0
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 6.9e-36 155.6 304 31.9
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 6.5e-34 149.1 80 88.8
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 1.4e-33 147.9 144 57.6
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 3.2e-33 146.7 138 58.0
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 3.5e-32 143.3 102 69.6
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 1.3e-29 134.8 181 43.6
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 1.4e-28 131.3 117 60.7
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 1.1e-25 121.7 102 62.7
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 3.2e-25 120.2 181 42.5
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 8.8e-23 112.1 128 51.6
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 2.5e-22 110.5 145 48.3
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 3.3e-22 110.2 71 67.6
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.3e-21 108.2 181 39.8
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 3.7e-13 80.1 64 65.6
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 4.1e-12 76.6 45 77.8
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.5e-09 68.2 59 62.7


User provided reference genes

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