Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 1.6e-42 175.6 88 100.0
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 1.0e-36 156.4 88 90.9
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 1.6e-34 149.1 90 85.6
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 6.9e-33 143.7 89 83.1
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 9.0e-33 143.3 94 80.9
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 9.0e-33 143.3 92 80.4
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 2.0e-32 142.1 89 83.1
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 2.6e-32 141.7 91 84.6
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 9.9e-32 139.8 91 83.5
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.3e-31 139.4 91 81.3
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 1.3e-31 139.4 95 80.0
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 1.7e-31 139.0 101 74.3
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 6.4e-31 137.1 91 80.2
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 6.4e-31 137.1 91 78.0
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 8.4e-31 136.7 88 78.4
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 1.4e-30 136.0 90 78.9
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 1.9e-30 135.6 91 78.0
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 2.5e-30 135.2 91 76.9
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 3.2e-30 134.8 89 78.7
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 3.2e-30 134.8 89 78.7
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 5.5e-30 134.0 92 75.0
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 5.5e-30 134.0 88 77.3
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 7.1e-30 133.7 96 71.9
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 1.2e-29 132.9 100 72.0
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 1.6e-29 132.5 88 77.3
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 2.1e-29 132.1 86 81.4
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 7.9e-29 130.2 91 74.7
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 1.0e-28 129.8 102 70.6
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.3e-28 129.4 91 74.7
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 1.8e-28 129.0 86 74.4
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 3.0e-28 128.3 90 73.3
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 3.0e-28 128.3 90 76.7
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 3.9e-28 127.9 88 76.1
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 6.7e-28 127.1 99 72.7
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 6.7e-28 127.1 91 74.7
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 6.7e-28 127.1 91 74.7
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 1.5e-27 125.9 97 72.2
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 1.9e-27 125.6 99 68.7
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 1.9e-27 125.6 79 83.5
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 2.5e-27 125.2 86 75.6
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 5.6e-27 124.0 85 72.9
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 9.6e-27 123.2 89 75.3
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 2.8e-26 121.7 88 69.3
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 2.8e-26 121.7 99 67.7
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 3.7e-26 121.3 94 69.1
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 3.7e-26 121.3 99 67.7
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 3.7e-26 121.3 99 64.6
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 4.8e-26 120.9 99 67.7
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 6.2e-26 120.6 75 81.3
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 8.2e-26 120.2 90 71.1
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 1.1e-25 119.8 95 66.3
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 1.1e-25 119.8 95 66.3
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 1.4e-25 119.4 93 69.9
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.8e-25 119.0 82 78.0
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 1.8e-25 119.0 88 68.2
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 2.4e-25 118.6 85 70.6
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 4.0e-25 117.9 92 69.6
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 5.3e-25 117.5 93 66.7
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 5.3e-25 117.5 93 66.7
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 5.3e-25 117.5 96 67.7
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 6.9e-25 117.1 88 68.2
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 9.0e-25 116.7 86 72.1
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 9.0e-25 116.7 86 72.1
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 9.0e-25 116.7 85 71.8
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 1.2e-24 116.3 93 65.6
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 1.2e-24 116.3 93 64.5
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 1.5e-24 115.9 90 67.8
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 1.5e-24 115.9 85 72.9
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 3.4e-24 114.8 89 67.4
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 3.4e-24 114.8 88 70.5
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 4.5e-24 114.4 91 65.9
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 4.5e-24 114.4 89 68.5
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 4.5e-24 114.4 97 61.9
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 5.8e-24 114.0 94 67.0
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 5.8e-24 114.0 87 69.0
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 7.6e-24 113.6 86 69.8
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 1.3e-23 112.8 92 65.2
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 1.7e-23 112.5 94 61.7
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 1.7e-23 112.5 94 61.7
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 2.2e-23 112.1 78 75.6
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 2.2e-23 112.1 86 68.6
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 2.2e-23 112.1 97 62.9
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 3.8e-23 111.3 88 67.0
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 4.9e-23 110.9 78 79.5
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 1.4e-22 109.4 93 62.4
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 2.5e-22 108.6 80 76.2
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 5.5e-22 107.5 77 68.8
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 7.1e-22 107.1 75 77.3
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 1.2e-21 106.3 73 76.7
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 2.1e-21 105.5 101 61.4
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 3.5e-21 104.8 82 72.0
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 4.6e-21 104.4 80 65.0
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 1.3e-20 102.8 87 69.0
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 1.3e-20 102.8 74 70.3
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 1.5e-19 99.4 77 68.8
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 1.5e-19 99.4 73 71.2
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 4.3e-19 97.8 97 58.8
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 4.3e-19 97.8 83 63.9
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 7.4e-19 97.1 75 70.7
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 2.4e-17 92.0 51 92.2
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 5.3e-17 90.9 76 67.1
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 1.3e-15 86.3 76 61.8
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 3.8e-15 84.7 49 85.7
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 1.4e-14 82.8 77 58.4
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 4.2e-14 81.3 42 92.9
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 5.5e-14 80.9 81 58.0
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 9.4e-14 80.1 50 86.0
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 1.8e-12 75.9 41 82.9
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 7.4e-11 70.5 61 60.7
RhsimUnG0003900 Rhododendron simsii HOM05D004431 ORTHO05D005053 5.3e-09 64.3 39 87.2
RhsimUnG0067300 Rhododendron simsii HOM05D004431 ORTHO05D005053 5.3e-09 64.3 39 87.2
CARHR132730 Cardamine hirsuta HOM05D007113 ORTHO05D008859 5.5e-06 54.3 60 48.3
Mapoly0005s0194 Marchantia polymorpha HOM05D007113 ORTHO05D008859 9.4e-06 53.5 45 57.8


User provided reference genes

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