Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 2.3e-113 412.1 198 100.0
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 3.8e-79 298.5 200 74.0
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 2.6e-72 275.8 206 68.0
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 2.1e-69 266.2 195 66.2
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 2.7e-69 265.8 195 66.2
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 4.0e-65 251.9 199 64.3
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 4.9e-63 245.0 201 63.7
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 8.4e-63 244.2 176 66.5
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 1.1e-62 243.8 191 64.4
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 3.2e-62 242.3 191 62.3
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 4.2e-62 241.9 198 61.6
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 1.2e-61 240.4 220 59.5
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 6.7e-60 234.6 191 63.9
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.3e-59 232.3 191 62.8
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 3.3e-59 232.3 193 60.6
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 7.4e-59 231.1 202 60.4
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 1.3e-58 230.3 197 62.4
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 8.2e-58 227.6 198 61.6
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 9.0e-57 224.2 192 62.0
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 2.0e-56 223.0 204 55.9
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 5.9e-56 221.5 185 58.4
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.3e-55 220.3 177 59.3
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 1.3e-55 220.3 209 56.9
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 2.2e-55 219.5 177 62.7
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 2.2e-55 219.5 203 58.6
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 2.2e-55 219.5 184 59.8
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.9e-55 219.2 219 55.7
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 6.5e-55 218.0 216 56.9
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 1.1e-54 217.2 198 57.1
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.1e-54 217.2 201 58.7
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 1.9e-54 216.5 195 61.0
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 1.9e-54 216.5 216 55.1
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 6.1e-53 211.5 179 60.9
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 6.1e-53 211.5 179 60.9
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 1.0e-52 210.7 189 56.1
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.0e-52 210.7 206 55.3
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 1.3e-52 210.3 200 56.5
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 2.3e-52 209.5 171 62.0
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 2.3e-52 209.5 174 60.9
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 3.0e-52 209.1 181 56.4
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 1.5e-51 206.8 193 57.5
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.5e-51 206.8 177 60.5
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 1.9e-51 206.5 176 61.4
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 1.3e-50 203.8 209 54.1
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 1.6e-50 203.4 196 53.6
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.6e-50 203.4 176 60.8
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 1.8e-49 199.9 168 57.1
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 1.8e-49 199.9 218 50.9
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 9.0e-49 197.6 182 59.9
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.5e-48 196.8 180 58.9
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 2.0e-48 196.4 213 52.1
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 3.4e-48 195.7 191 53.9
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 4.5e-48 195.3 165 57.6
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 1.7e-47 193.4 206 48.1
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 2.2e-47 193.0 213 49.3
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 2.9e-47 192.6 174 55.7
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 2.9e-47 192.6 174 59.8
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 3.8e-47 192.2 198 53.5
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 3.8e-47 192.2 206 48.1
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 5.0e-47 191.8 176 56.8
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.1e-46 190.7 205 49.3
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.4e-46 190.3 175 52.6
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.4e-46 190.3 187 54.0
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.9e-46 189.9 171 56.1
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.9e-46 189.9 173 56.6
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 2.5e-46 189.5 196 52.6
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 2.5e-46 189.5 178 52.8
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 2.5e-46 189.5 189 52.9
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 3.2e-46 189.1 207 51.7
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 4.2e-46 188.7 180 57.2
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 5.5e-46 188.3 213 50.7
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.6e-45 186.8 178 53.9
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 4.6e-45 185.3 175 52.0
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 6.1e-45 184.9 184 50.5
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 7.9e-45 184.5 205 52.7
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.8e-44 183.3 183 55.2
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 3.0e-44 182.6 185 53.5
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 3.9e-44 182.2 173 53.8
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 6.7e-44 181.4 188 53.7
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 2.5e-43 179.5 210 50.5
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 4.3e-43 178.7 211 50.2
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 1.7e-42 176.8 190 52.6
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 2.2e-42 176.4 186 52.7
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 3.7e-42 175.6 153 57.5
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.1e-41 174.1 179 53.1
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 1.4e-41 173.7 176 52.3
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 5.3e-41 171.8 178 50.0
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 5.3e-41 171.8 181 53.6
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 9.1e-41 171.0 215 47.4
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 9.1e-41 171.0 215 47.4
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 9.1e-41 171.0 174 53.4
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 1.2e-40 170.6 215 47.0
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 1.2e-40 170.6 215 47.0
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.2e-40 170.6 221 45.7
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 1.5e-40 170.2 194 50.5
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 1.5e-40 170.2 200 49.0
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 2.0e-40 169.9 215 47.0
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 5.9e-40 168.3 171 49.7
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 5.0e-39 165.2 133 63.2
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 6.5e-39 164.9 187 49.7
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 8.5e-39 164.5 195 49.2
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.4e-38 163.7 164 53.7
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 2.5e-38 162.9 194 48.5
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.1e-37 159.8 161 52.2
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 7.9e-37 157.9 161 52.8
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 1.0e-36 157.5 224 43.3
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 6.7e-36 154.8 178 48.9
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.5e-35 153.7 156 50.6
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 3.7e-34 149.1 208 41.3
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 1.1e-33 147.5 159 50.9
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 1.4e-33 147.1 138 52.9
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 3.1e-33 146.0 288 36.5
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 2.6e-32 142.9 199 42.7
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 3.5e-32 142.5 186 44.6
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 2.2e-31 139.8 187 41.2
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 3.8e-31 139.0 144 51.4
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 1.1e-30 137.5 131 55.7
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 2.5e-30 136.3 162 46.3
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 3.2e-30 136.0 173 46.2
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 1.2e-29 134.0 113 55.8
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 1.6e-29 133.7 144 50.0
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 6.1e-29 131.7 101 63.4
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 4.0e-28 129.0 171 46.2
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 4.0e-28 129.0 200 37.5
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 6.7e-28 128.3 209 40.2
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 8.8e-28 127.9 199 38.2
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.1e-27 127.5 188 45.2
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.1e-27 127.5 191 44.5
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.1e-27 127.5 189 45.0
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 1.1e-27 127.5 168 42.9
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 1.5e-27 127.1 193 42.5
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.5e-27 127.1 196 38.8
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 3.7e-26 122.5 126 50.0
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 2.7e-24 116.3 174 39.1
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 7.7e-24 114.8 153 49.0
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.3e-23 114.0 192 39.6
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.7e-23 113.6 137 42.3
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 5.5e-22 108.6 296 32.8
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 1.6e-21 107.1 131 43.5
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 2.7e-21 106.3 185 38.9
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 2.7e-21 106.3 100 49.0
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 3.6e-21 105.9 102 49.0
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 6.1e-21 105.1 198 31.3
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 6.8e-20 101.7 186 32.8
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 4.4e-19 99.0 191 32.5
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.3e-18 97.4 116 53.4
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.7e-18 97.1 78 60.3
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 6.3e-18 95.1 113 45.1
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 1.3e-15 87.4 131 38.2
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 5.5e-14 82.0 73 54.8
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 8.0e-13 78.2 242 27.3
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.0e-12 77.8 57 63.2
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.7e-10 70.5 184 33.2
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 1.5e-06 57.4 42 59.5


User provided reference genes

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