Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 8.0e-152 540.4 277 100.0
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 1.1e-108 397.1 247 84.2
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 2.5e-105 386.0 247 85.4
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 9.6e-97 357.5 252 78.6
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 1.7e-90 336.7 220 80.5
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 6.6e-90 334.7 223 79.8
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 9.6e-89 330.9 247 74.9
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 1.6e-88 330.1 247 73.7
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 4.8e-88 328.6 232 79.7
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 6.2e-88 328.2 202 85.1
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 8.1e-88 327.8 247 74.5
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 8.1e-88 327.8 239 74.9
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.1e-87 327.4 247 73.3
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 3.1e-87 325.9 247 73.3
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 3.1e-87 325.9 244 73.4
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 5.3e-87 325.1 255 71.8
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.2e-86 323.9 248 71.8
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 2.6e-86 322.8 247 72.5
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 4.4e-86 322.0 247 74.1
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 4.4e-86 322.0 247 74.1
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 1.3e-85 320.5 219 79.0
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 1.1e-84 317.4 234 73.5
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.9e-84 316.6 247 70.9
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 3.2e-84 315.8 260 67.7
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 7.1e-84 314.7 188 88.3
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 7.1e-84 314.7 189 86.2
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 2.3e-82 309.7 237 72.2
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 3.9e-82 308.9 220 76.8
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 6.6e-82 308.1 221 73.8
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 1.5e-81 307.0 234 70.5
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 1.9e-81 306.6 211 75.8
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 3.3e-81 305.8 189 84.1
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 4.3e-81 305.4 221 71.9
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 9.6e-81 304.3 221 71.9
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 2.8e-80 302.8 242 69.8
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 4.8e-80 302.0 242 69.4
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 1.1e-79 300.8 192 81.8
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 2.4e-79 299.7 224 71.9
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 4.0e-79 298.9 222 72.5
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 5.3e-79 298.5 196 78.6
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 9.0e-79 297.7 297 60.6
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 2.6e-78 296.2 239 68.6
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 3.4e-78 295.8 195 77.4
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 5.8e-78 295.0 249 67.1
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 9.9e-78 294.3 247 66.4
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.3e-77 293.9 228 69.7
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.3e-77 293.9 201 76.6
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.7e-77 293.5 270 63.0
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 2.2e-77 293.1 247 64.4
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 2.2e-77 293.1 249 64.7
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 2.2e-77 293.1 196 76.5
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 2.2e-77 293.1 188 81.9
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 2.2e-77 293.1 232 68.1
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 2.9e-77 292.7 249 64.7
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 2.9e-77 292.7 233 67.4
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 2.9e-77 292.7 244 64.8
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 2.9e-77 292.7 247 65.2
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 4.9e-77 292.0 285 60.4
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 6.4e-77 291.6 250 66.8
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 5.5e-76 288.5 244 65.6
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 7.1e-76 288.1 191 77.5
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 9.3e-76 287.7 208 73.6
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 1.6e-75 287.0 247 66.8
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.1e-75 286.6 248 67.7
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 3.5e-75 285.8 219 69.4
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 6.0e-75 285.0 208 75.5
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 5.1e-74 282.0 194 73.7
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 6.7e-74 281.6 252 62.7
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 2.5e-73 279.6 241 65.1
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 9.6e-73 277.7 246 63.8
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 1.3e-72 277.3 245 63.7
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 1.6e-72 276.9 238 65.1
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.6e-72 276.9 207 72.9
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 2.1e-72 276.6 244 63.5
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 4.8e-72 275.4 169 81.7
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 3.4e-70 269.2 192 72.9
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 7.1e-68 261.5 165 80.6
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 7.4e-65 251.5 257 61.1
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.3e-64 250.8 166 76.5
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 2.2e-61 240.0 244 60.7
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.9e-60 236.9 252 60.3
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 3.2e-60 236.1 232 61.2
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 7.2e-60 235.0 239 61.1
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 9.3e-60 234.6 189 69.3
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 1.0e-58 231.1 191 63.4
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 1.1e-57 227.6 261 54.8
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 3.7e-56 222.6 208 55.8
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 8.2e-56 221.5 183 66.1
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 9.0e-55 218.0 233 55.8
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 2.6e-54 216.5 199 55.8
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 1.3e-53 214.2 252 54.0
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.9e-52 210.3 191 57.1
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.4e-50 204.1 183 58.5
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.8e-50 203.8 244 52.9
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.8e-50 203.8 193 56.0
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 8.8e-50 201.4 244 52.5
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 5.7e-49 198.7 244 52.0
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 2.8e-48 196.4 245 52.2
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 6.9e-47 191.8 220 55.5
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.5e-46 190.7 193 54.9
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 4.2e-44 182.6 111 85.6
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 1.1e-41 174.5 124 74.2
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 3.3e-41 172.9 111 80.2
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 7.7e-38 161.8 99 83.8
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 6.5e-37 158.7 121 71.9
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 2.7e-27 126.7 86 76.7
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 3.0e-26 123.2 137 54.0
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.2e-25 121.3 68 88.2
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 3.4e-25 119.8 221 39.8
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 2.8e-24 116.7 86 74.4
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 4.8e-24 115.9 80 73.8
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 1.9e-20 104.0 118 55.9
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 5.5e-20 102.4 63 85.7
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 5.5e-20 102.4 66 74.2
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 4.7e-19 99.4 112 52.7
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.4e-18 97.8 119 52.9
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 2.3e-18 97.1 204 34.3
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 3.0e-18 96.7 105 55.2
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 3.0e-18 96.7 151 37.1
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-17 94.4 103 57.3
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 1.3e-16 91.3 105 52.4
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 4.1e-15 86.3 112 45.5
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 5.4e-15 85.9 61 73.8
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-12 78.2 78 56.4
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 1.1e-12 78.2 61 67.2
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 1.9e-12 77.4 58 74.1
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 3.3e-12 76.6 45 88.9
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 7.3e-12 75.5 57 70.2
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 3.6e-11 73.2 94 50.0
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 5.2e-10 69.3 35 94.3
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 4.4e-09 66.2 138 33.3
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 1.4e-07 61.2 39 69.2
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.5e-06 56.6 130 36.9


User provided reference genes

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