Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 0.0e+00 1787.7 937 100.0
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 0.0e+00 1308.9 792 89.3
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 4.9e-294 1014.6 1038 61.1
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.9e-221 773.5 815 59.8
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.1e-212 743.4 759 61.1
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 1.4e-168 597.8 1019 43.4
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.8e-115 421.4 789 40.7
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 3.1e-115 420.6 847 40.4
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 5.9e-114 416.4 768 42.1
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 9.4e-112 409.1 765 42.2
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 8.2e-108 396.0 753 42.4
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 7.4e-101 372.9 759 40.6
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 4.5e-98 363.6 1123 33.4
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 1.0e-97 362.5 642 43.0
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.5e-96 358.6 938 35.8
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 5.5e-96 356.7 734 39.1
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.2e-95 355.5 736 39.0
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 8.8e-94 349.4 758 38.1
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 2.6e-93 347.8 753 38.2
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 9.7e-93 345.9 753 38.6
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 7.0e-91 339.7 758 38.4
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.3e-89 335.5 755 37.7
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.2e-89 334.7 829 37.9
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 8.5e-89 332.8 765 37.1
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 1.1e-88 332.4 1117 31.2
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 7.2e-88 329.7 837 35.0
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 8.0e-87 326.2 757 37.8
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 9.8e-85 319.3 807 35.4
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 9.8e-85 319.3 731 36.7
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 8.3e-84 316.2 790 35.1
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 1.3e-81 308.9 782 36.3
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.7e-81 308.5 786 36.9
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 5.0e-81 307.0 956 32.5
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.5e-80 305.4 948 32.8
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 4.4e-77 293.9 581 41.1
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.9e-74 283.5 783 35.4
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.6e-73 280.0 770 35.6
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.6e-71 275.4 759 35.8
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.4e-70 272.3 780 35.3
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 6.8e-70 270.0 361 51.5
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.0e-69 268.5 959 31.5
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 2.0e-69 268.5 652 37.4
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 1.7e-68 265.4 767 34.2
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 8.3e-68 263.1 602 36.7
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.1e-67 262.7 767 33.5
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 1.6e-66 258.8 632 37.8
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.6e-66 258.8 808 32.9
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 4.6e-66 257.3 577 36.9
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.3e-65 255.0 761 32.9
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 5.0e-65 253.8 1005 30.8
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 8.6e-65 253.1 785 33.2
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 3.3e-64 251.1 381 47.0
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.8e-63 248.1 693 34.2
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.8e-62 245.4 753 33.5
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 4.0e-62 244.2 557 36.3
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 4.0e-62 244.2 1021 30.6
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 8.9e-62 243.0 744 33.7
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 3.7e-60 237.7 782 32.4
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 8.3e-60 236.5 751 34.0
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.9e-59 235.3 771 32.8
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 4.1e-59 234.2 403 42.4
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 2.0e-58 231.9 663 35.7
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.3e-57 228.4 993 29.9
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 9.5e-56 223.0 623 35.6
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 3.6e-55 221.1 566 36.2
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.7e-55 220.7 280 48.9
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 4.7e-55 220.7 998 29.8
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 3.1e-54 218.0 817 30.6
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 4.0e-54 217.6 558 35.5
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 2.0e-53 215.3 797 30.7
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.3e-52 212.6 386 43.5
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 3.7e-52 211.1 716 31.7
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 6.0e-50 203.8 698 32.4
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.0e-49 203.0 269 48.0
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.7e-49 202.2 527 36.2
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 2.3e-49 201.8 769 32.0
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 3.0e-49 201.4 406 39.4
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.1e-48 199.5 978 29.6
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 2.5e-48 198.4 606 34.8
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 1.2e-47 196.1 516 34.1
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.8e-47 194.9 762 30.7
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 4.7e-47 194.1 527 35.1
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.1e-46 193.0 443 37.0
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.6e-45 188.3 517 33.8
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 3.4e-45 188.0 719 29.5
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 4.4e-45 187.6 806 30.3
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.3e-44 186.0 394 37.1
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 2.9e-44 184.9 969 28.2
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 9.2e-43 179.9 692 30.9
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 9.2e-43 179.9 756 28.4
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.2e-42 179.5 295 41.7
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.3e-41 176.0 395 34.4
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 2.3e-41 175.3 495 32.3
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 3.9e-41 174.5 165 59.4
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.3e-40 171.4 754 28.8
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 9.6e-40 169.9 764 30.8
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 6.2e-39 167.2 443 34.1
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 8.1e-39 166.8 288 38.2
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 8.4e-36 156.8 747 28.8
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.4e-35 156.0 145 59.3
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 9.3e-35 153.3 351 35.9
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.6e-34 152.5 449 32.5
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 2.3e-33 148.7 329 37.4
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 1.1e-32 146.4 527 31.3
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.3e-31 142.9 355 34.4
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 1.3e-31 142.9 320 35.6
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.6e-31 142.5 286 35.7
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 1.6e-31 142.5 254 39.8
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 2.8e-31 141.7 278 35.6
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 6.2e-31 140.6 294 38.1
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 3.1e-30 138.3 325 34.8
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.1e-30 138.3 281 38.1
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 5.3e-30 137.5 333 35.1
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.5e-29 136.0 280 36.4
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 1.5e-29 136.0 280 36.4
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 2.0e-29 135.6 339 35.4
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 7.6e-29 133.7 342 34.8
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 3.8e-28 131.3 268 35.8
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 4.9e-28 131.0 338 34.9
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.1e-27 129.8 287 36.6
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 4.2e-27 127.9 235 40.0
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 7.1e-27 127.1 226 39.4
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 1.2e-26 126.3 268 35.4
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.2e-26 126.3 184 41.3
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 1.2e-26 126.3 148 47.3
Atru.chr5.3066 Acer truncatum HOM05D003739 ORTHO05D003996 5.1e-25 120.9 339 32.7
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 8.7e-25 120.2 747 26.4
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.9e-24 119.0 563 27.9
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 2.5e-24 118.6 272 33.1
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.6e-23 115.9 527 26.6
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 8.1e-23 113.6 534 27.5
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.8e-22 112.5 272 32.7
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 9.0e-22 110.2 218 36.7
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 2.0e-21 109.0 536 27.1
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 3.8e-20 104.8 329 31.9
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 2.1e-18 99.0 211 40.8
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 3.5e-18 98.2 171 37.4
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 5.1e-17 94.4 154 43.5
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 7.4e-16 90.5 107 43.9
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.6e-15 89.4 258 30.6
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.1e-15 89.0 61 65.6
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 6.2e-15 87.4 142 38.0
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 6.2e-15 87.4 553 26.4
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.8e-14 85.9 163 35.0
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.1e-14 85.1 158 36.7
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 6.9e-14 84.0 106 43.4
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 4.5e-13 81.3 80 55.0
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 5.8e-13 80.9 288 27.4
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.3e-12 79.7 467 24.6
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 3.8e-12 78.2 211 33.2
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.4e-12 77.0 311 29.3
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 1.9e-11 75.9 451 25.5
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 3.5e-10 71.6 55 63.6
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.3e-09 68.9 140 38.6
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 3.0e-09 68.6 93 46.2
Thecc.07G171200 Theobroma cacao HOM05D003739 ORTHO05D003996 3.0e-09 68.6 141 39.7
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.1e-07 62.4 135 37.0
Actinidia05492 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.8e-06 59.3 98 44.9
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 5.3e-06 57.8 158 29.7
HPP92_008918 Vanilla planifolia HOM05D003739 ORTHO05D003996 5.3e-06 57.8 116 34.5
Hma1.2p1_0088F.1_g045220 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 6.9e-06 57.4 69 49.3


User provided reference genes

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