Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 2.6e-239 831.6 422 100.0
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 2.6e-202 708.8 423 84.6
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 6.8e-195 684.1 421 82.7
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 4.4e-194 681.4 444 82.2
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 1.1e-168 597.0 424 73.1
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 5.1e-166 588.2 425 71.1
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 9.9e-162 573.9 428 69.9
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 1.7e-161 573.2 426 71.4
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 2.1e-159 566.2 394 73.6
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 2.7e-159 565.8 426 69.7
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 3.5e-159 565.5 426 69.7
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 1.7e-158 563.1 428 69.2
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 2.8e-156 555.8 402 70.1
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.8e-156 555.1 429 68.3
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 6.2e-156 554.7 426 68.1
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 1.4e-155 553.5 427 65.6
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 4.0e-155 552.0 427 67.2
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 5.3e-155 551.6 429 67.8
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 3.3e-149 532.3 393 71.0
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 7.4e-149 531.2 425 64.7
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.1e-147 527.3 409 67.7
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 2.4e-147 526.2 397 68.5
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 2.4e-147 526.2 387 69.8
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 4.0e-147 525.4 387 70.3
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 3.4e-146 522.3 401 66.3
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 9.9e-146 520.8 427 62.8
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 1.3e-145 520.4 427 63.0
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 4.9e-145 518.5 407 64.6
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 7.1e-144 514.6 397 65.7
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 4.6e-143 511.9 389 66.6
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 4.6e-143 511.9 386 68.4
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.3e-142 510.4 389 66.3
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 3.0e-142 509.2 425 61.6
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 6.7e-142 508.1 380 68.7
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.1e-141 507.3 454 62.1
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 3.3e-141 505.8 399 65.9
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 4.3e-141 505.4 402 63.4
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 2.1e-140 503.1 431 62.2
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.8e-140 502.7 429 63.6
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 5.3e-139 498.4 379 68.3
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 1.0e-137 494.2 419 62.3
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 1.3e-137 493.8 411 65.7
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 3.2e-136 489.2 396 63.9
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 2.1e-135 486.5 394 64.2
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 2.7e-135 486.1 395 63.8
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 2.3e-134 483.0 397 63.5
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 5.1e-134 481.9 391 64.5
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 4.8e-132 475.3 429 58.0
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.8e-131 473.4 398 62.6
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 1.5e-130 470.3 447 57.3
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 4.5e-130 468.8 386 63.7
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 7.6e-130 468.0 388 61.6
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 1.0e-129 467.6 396 61.6
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 1.3e-129 467.2 396 61.4
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 5.0e-129 465.3 399 61.2
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.1e-128 464.2 407 61.4
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 1.2e-127 460.7 396 60.9
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 4.6e-127 458.8 390 59.5
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 4.6e-127 458.8 401 60.6
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.8e-126 456.8 383 61.1
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 3.9e-126 455.7 380 62.4
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 9.7e-125 451.1 349 69.1
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 2.2e-124 449.9 425 57.6
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 3.1e-123 446.0 357 64.1
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 6.9e-123 444.9 395 58.0
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 4.5e-122 442.2 385 60.3
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 1.7e-121 440.3 395 56.2
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 1.7e-121 440.3 431 55.5
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.1e-119 433.3 334 68.6
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 6.1e-119 431.8 431 54.5
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 2.3e-118 429.9 423 55.3
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 3.8e-113 412.5 383 54.6
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 6.7e-110 401.7 323 65.0
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 3.3e-109 399.4 392 54.1
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 6.3e-108 395.2 383 54.6
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 6.3e-108 395.2 383 54.6
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 8.2e-108 394.8 383 54.6
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 1.4e-107 394.0 383 54.0
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 5.3e-107 392.1 387 55.0
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 7.0e-107 391.7 386 53.9
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 4.5e-106 389.0 382 53.9
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 4.5e-106 389.0 376 55.6
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.5e-104 383.3 337 60.2
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.5e-104 383.3 337 60.2
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 5.5e-104 382.1 385 56.6
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 9.4e-104 381.3 382 52.9
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 1.6e-103 380.6 382 53.1
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 1.0e-102 377.9 382 52.9
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 1.0e-102 377.9 383 53.0
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 2.3e-102 376.7 420 48.8
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 3.0e-102 376.3 382 52.9
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 9.7e-101 371.3 382 52.4
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 8.2e-100 368.2 381 52.8
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 1.4e-99 367.5 421 49.6
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 9.1e-99 364.8 287 65.9
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 1.1e-91 341.3 404 47.8
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 7.0e-91 338.6 383 51.4
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 6.8e-86 322.0 402 46.0
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 1.2e-85 321.2 330 52.4
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.0e-81 308.1 303 54.8
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 1.9e-80 303.9 403 45.4
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 4.7e-79 299.3 311 53.7
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 2.3e-73 280.4 353 46.5
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 3.3e-72 276.6 316 46.2
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 1.1e-70 271.6 422 41.5
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 2.0e-61 240.7 396 39.6
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 7.5e-61 238.8 250 50.8
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 1.5e-56 224.6 329 39.8
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 1.9e-56 224.2 361 41.0
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 8.4e-44 182.2 188 52.7
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 6.6e-41 172.6 149 57.0
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 2.1e-39 167.5 395 32.9
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.8e-38 164.5 194 49.5
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.0e-37 161.0 339 34.2
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 6.4e-36 156.0 377 32.4
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 7.1e-35 152.5 348 33.3
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.5e-34 150.2 176 50.6
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 6.0e-34 149.4 174 48.3
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 6.0e-34 149.4 174 48.3
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.8e-33 147.9 111 63.1
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.8e-31 140.6 161 51.6
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 4.8e-31 139.8 73 89.0
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 8.1e-31 139.0 256 36.3
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.4e-27 128.3 123 51.2
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 3.2e-27 127.1 90 70.0
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 5.5e-27 126.3 104 65.4
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.3e-24 117.1 99 60.6
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.4e-22 111.7 74 75.7
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 4.9e-20 103.2 61 78.7
QL04p046160 Quercus lobata HOM05D005911 ORTHO05D338257 2.7e-18 97.4 61 73.8
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 3.5e-18 97.1 116 47.4
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 3.5e-18 97.1 109 53.2
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 5.3e-14 83.2 73 60.3
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 5.3e-14 83.2 73 60.3
QL04p046258 Quercus lobata HOM05D005911 ORTHO05D338131 1.6e-10 71.6 112 41.1
Phvul.001G167800 Phaseolus vulgaris HOM05D003225 ORTHO05D003818 1.8e-09 68.2 376 23.9
Lj1g0002088 Lotus japonicus HOM05D003225 ORTHO05D003818 8.8e-09 65.9 373 23.3
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 3.3e-08 63.9 45 77.8
Pp3s34_123 Physcomitrium patens HOM05D003546 ORTHO05D005667 9.7e-08 62.4 257 26.1
TPR.G30862 Trifolium pratense HOM05D003225 ORTHO05D003818 1.7e-07 61.6 385 24.2
VMungo1383G0903 Vigna mungo HOM05D003225 ORTHO05D003818 2.8e-07 60.8 372 24.5
Cfa002504 Carpinus fangiana HOM05D003225 ORTHO05D003818 6.3e-07 59.7 366 24.3
Eucgr.K03579 Eucalyptus grandis HOM05D003225 ORTHO05D003818 1.1e-06 58.9 355 22.8
Migut.D00492 Erythranthe guttata HOM05D003225 ORTHO05D003818 4.1e-06 57.0 346 23.1
Lsat_1_v5_gn_3_139021 Lactuca sativa HOM05D000115 ORTHO05D000645 5.3e-06 56.6 34 70.6
Aqoxy5G00087 Aquilegia oxysepala HOM05D003225 ORTHO05D003818 6.9e-06 56.2 335 23.9
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 6.9e-06 56.2 250 24.8
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 6.9e-06 56.2 255 24.7
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 9.1e-06 55.8 273 23.1


User provided reference genes

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