Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 1.0e-60 236.5 115 100.0
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.8e-28 129.4 100 64.0
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 6.9e-25 117.5 106 65.1
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 6.5e-23 110.9 80 67.5
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 6.7e-20 100.9 105 50.5
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 6.7e-20 100.9 114 51.8
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 1.9e-19 99.4 123 42.3
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.9e-19 99.4 89 55.1
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 1.4e-17 93.2 110 46.4
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 1.8e-17 92.8 95 51.6
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 3.1e-17 92.0 103 50.5
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 4.1e-17 91.7 96 52.1
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 5.3e-17 91.3 96 50.0
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 5.3e-17 91.3 102 52.0
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 1.5e-16 89.7 98 49.0
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 3.4e-16 88.6 92 53.3
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 7.7e-16 87.4 94 53.2
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 2.9e-15 85.5 97 48.5
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 5.0e-15 84.7 99 47.5
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 8.5e-15 84.0 86 47.7
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 8.5e-15 84.0 97 49.5
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 1.1e-14 83.6 98 45.9
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 1.1e-14 83.6 112 45.5
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.4e-14 83.2 98 46.9
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.9e-14 82.8 98 46.9
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.5e-14 82.4 98 44.9
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.5e-14 82.4 98 45.9
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 2.5e-14 82.4 93 47.3
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 2.5e-14 82.4 80 53.8
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 3.2e-14 82.0 98 43.9
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 3.2e-14 82.0 83 53.0
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 3.2e-14 82.0 76 53.9
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 4.2e-14 81.6 87 49.4
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 4.2e-14 81.6 108 47.2
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 7.2e-14 80.9 94 46.8
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 7.2e-14 80.9 98 49.0
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 9.4e-14 80.5 94 46.8
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 9.4e-14 80.5 119 45.4
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.2e-13 80.1 94 46.8
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 1.2e-13 80.1 99 44.4
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 2.1e-13 79.3 94 46.8
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 2.1e-13 79.3 82 53.7
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 2.7e-13 79.0 104 48.1
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 3.6e-13 78.6 97 46.4
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 3.6e-13 78.6 78 48.7
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 4.6e-13 78.2 101 50.5
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 4.6e-13 78.2 111 44.1
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 6.1e-13 77.8 95 48.4
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 7.9e-13 77.4 95 45.3
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 7.9e-13 77.4 95 50.5
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 7.9e-13 77.4 87 50.6
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 1.4e-12 76.6 85 50.6
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 1.4e-12 76.6 108 39.8
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 1.8e-12 76.3 87 48.3
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 3.9e-12 75.1 79 48.1
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 5.1e-12 74.7 86 50.0
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 8.8e-12 73.9 110 36.4
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 2.0e-11 72.8 90 43.3
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 2.0e-11 72.8 92 46.7
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 2.5e-11 72.4 110 42.7
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 3.3e-11 72.0 94 45.7
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 4.3e-11 71.6 86 45.3
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 5.7e-11 71.2 83 47.0
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 5.7e-11 71.2 109 41.3
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 5.7e-11 71.2 96 38.5
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 7.4e-11 70.9 116 37.9
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 9.7e-11 70.5 87 46.0
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 9.7e-11 70.5 117 41.9
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 1.3e-10 70.1 95 41.1
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 1.3e-10 70.1 87 44.8
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 1.7e-10 69.7 80 47.5
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.2e-10 69.3 75 44.0
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 2.8e-10 68.9 101 40.6
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 3.7e-10 68.6 80 42.5
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 3.7e-10 68.6 95 37.9
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 6.3e-10 67.8 85 42.4
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 8.2e-10 67.4 88 43.2
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 1.1e-09 67.0 86 39.5
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 1.1e-09 67.0 102 36.3
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.1e-09 67.0 83 47.0
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 1.4e-09 66.6 79 44.3
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 1.4e-09 66.6 97 41.2
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 1.8e-09 66.2 79 44.3
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.4e-09 65.9 74 47.3
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 3.1e-09 65.5 87 40.2
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 4.1e-09 65.1 84 41.7
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 5.3e-09 64.7 114 38.6
Atru.chr5.2996 Acer truncatum HOM05D007556 ORTHO05D002252 6.9e-09 64.3 120 37.5
Ciclev10029484m.g Citrus clementina HOM05D007556 ORTHO05D002252 6.9e-09 64.3 98 36.7
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 6.9e-09 64.3 92 43.5
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 9.1e-09 63.9 98 37.8
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 9.1e-09 63.9 63 44.4
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 9.1e-09 63.9 73 41.1
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 1.2e-08 63.5 101 34.7
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 1.2e-08 63.5 92 39.1
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 1.5e-08 63.2 85 43.5
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 1.5e-08 63.2 88 36.4
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 2.0e-08 62.8 79 46.8
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 2.0e-08 62.8 81 43.2
Atru.chr5.2993 Acer truncatum HOM05D007227 ORTHO05D002252 3.4e-08 62.0 104 39.4
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 3.4e-08 62.0 92 39.1
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 3.4e-08 62.0 86 39.5
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 3.4e-08 62.0 92 39.1
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 4.5e-08 61.6 82 41.5
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 4.5e-08 61.6 91 40.7
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 4.5e-08 61.6 104 35.6
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 5.9e-08 61.2 97 35.1
COL.COLO4_11793 Corchorus olitorius HOM05D007556 ORTHO05D002252 1.0e-07 60.5 100 39.0
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 1.0e-07 60.5 113 36.3
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 1.3e-07 60.1 91 40.7
Phvul.011G046250 Phaseolus vulgaris HOM05D010359 ORTHO05D002252 1.7e-07 59.7 95 35.8
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 1.7e-07 59.7 92 38.0
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.7e-07 59.7 78 38.5
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.7e-07 59.7 78 38.5
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 2.9e-07 58.9 96 39.6
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 2.9e-07 58.9 109 33.0
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 2.9e-07 58.9 98 33.7
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 3.8e-07 58.5 61 44.3
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 3.8e-07 58.5 78 42.3
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 3.8e-07 58.5 87 37.9
Hma1.2p1_0066F.1_g036590 Hydrangea macrophylla HOM05D007227 ORTHO05D002252 5.0e-07 58.2 62 48.4
Hund00283 Selenicereus undatus HOM05D013587 ORTHO05D002252 5.0e-07 58.2 87 37.9
Prupe.8G098800 Prunus persica HOM05D007556 ORTHO05D002252 6.5e-07 57.8 91 37.4
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 8.5e-07 57.4 96 38.5
Atru.chr5.2995 Acer truncatum HOM05D007556 ORTHO05D002252 1.1e-06 57.0 101 35.6
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.1e-06 57.0 127 34.6
Prupe.8G099400 Prunus persica HOM05D007556 ORTHO05D002252 1.1e-06 57.0 125 37.6
Aqoxy5G01653 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 1.4e-06 56.6 51 49.0
MELO3C020982.2 Cucumis melo HOM05D007227 ORTHO05D002252 1.4e-06 56.6 84 39.3
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.9e-06 56.2 81 43.2
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.9e-06 56.2 92 34.8
Peaxi162Scf00003g01323 Petunia axillaris HOM05D007227 ORTHO05D002252 1.9e-06 56.2 74 40.5
PGSC0003DMG400009559 Solanum tuberosum HOM05D007556 ORTHO05D002252 1.9e-06 56.2 60 46.7
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 2.5e-06 55.8 75 44.0
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 2.5e-06 55.8 75 44.0
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 2.5e-06 55.8 75 44.0
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 2.5e-06 55.8 75 44.0
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 2.5e-06 55.8 75 44.0
CSS0014637 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 2.5e-06 55.8 109 37.6
Eucgr.G00440 Eucalyptus grandis HOM05D040694 ORTHO05D002252 2.5e-06 55.8 90 34.4
PGSC0003DMG400020028 Solanum tuberosum HOM05D007556 ORTHO05D002252 2.5e-06 55.8 53 49.1
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 2.5e-06 55.8 110 34.5
Gorai.012G152300 Gossypium raimondii HOM05D007556 ORTHO05D002252 3.2e-06 55.5 85 37.6
HanXRQChr01g0007701 Helianthus annuus HOM05D017364 ORTHO05D002252 3.2e-06 55.5 84 34.5
Nitab4.5_0011008g0030 Nicotiana tabacum HOM05D007227 ORTHO05D002252 3.2e-06 55.5 87 40.2
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 3.2e-06 55.5 123 35.8
Aqoxy5G01668 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 4.2e-06 55.1 72 40.3
CSS0038929 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 4.2e-06 55.1 81 35.8
arahy.Tifrunner.gnm1.ann1.RC1NFA Arachis hypogaea HOM05D023705 ORTHO05D002252 5.5e-06 54.7 76 32.9
EL10Ac9g21743 Beta vulgaris HOM05D013587 ORTHO05D002252 5.5e-06 54.7 79 41.8
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 5.5e-06 54.7 75 44.0
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 5.5e-06 54.7 75 44.0
Glyma.17G150700 Glycine max HOM05D007227 ORTHO05D002252 5.5e-06 54.7 47 59.6
Psat5g006600 Pisum sativum HOM05D010359 ORTHO05D002252 5.5e-06 54.7 79 38.0
Glyma.14G013250 Glycine max HOM05D007227 ORTHO05D002252 7.2e-06 54.3 47 59.6
Psat5g006440 Pisum sativum HOM05D010359 ORTHO05D002252 7.2e-06 54.3 79 38.0
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 7.2e-06 54.3 46 54.3
arahy.Tifrunner.gnm1.ann1.JI131A Arachis hypogaea HOM05D023705 ORTHO05D002252 9.4e-06 53.9 86 31.4
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 9.4e-06 53.9 75 41.3
CAN.G132.5 Capsicum annuum HOM05D007556 ORTHO05D002252 9.4e-06 53.9 86 38.4
Cfa007851 Carpinus fangiana HOM05D033200 ORTHO05D022252 9.4e-06 53.9 91 41.8
Solyc07g016215.1 Solanum lycopersicum HOM05D007556 ORTHO05D002252 9.4e-06 53.9 87 39.1


User provided reference genes

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