Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 3.9e-91 338.2 180 100.0
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.6e-39 166.8 100 93.0
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 2.0e-26 123.2 89 77.5
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 2.0e-26 123.2 90 76.7
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 4.9e-25 118.6 90 73.3
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 8.3e-25 117.9 91 72.5
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 2.7e-23 112.8 89 67.4
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 2.7e-23 112.8 89 74.2
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.3e-22 110.5 90 72.2
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 3.8e-22 109.0 103 68.0
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 6.6e-22 108.2 90 65.6
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 1.1e-21 107.5 92 68.5
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.5e-21 107.1 97 63.9
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 1.5e-21 107.1 92 63.0
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 2.5e-21 106.3 91 67.0
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 2.5e-21 106.3 95 65.3
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 3.3e-21 105.9 90 67.8
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 4.3e-21 105.5 92 69.6
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 4.3e-21 105.5 89 65.2
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 7.3e-21 104.8 90 65.6
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 9.5e-21 104.4 90 66.7
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 1.6e-20 103.6 93 67.7
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 1.6e-20 103.6 90 65.6
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 3.6e-20 102.4 91 61.5
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.6e-20 102.4 93 64.5
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 4.7e-20 102.1 92 58.7
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 6.1e-20 101.7 90 65.6
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 6.1e-20 101.7 90 65.6
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 8.0e-20 101.3 90 63.3
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 8.0e-20 101.3 89 64.0
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 1.0e-19 100.9 87 71.3
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.0e-19 100.9 92 60.9
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 1.4e-19 100.5 90 58.9
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.4e-19 100.5 93 63.4
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 1.8e-19 100.1 92 58.7
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 2.3e-19 99.8 117 50.4
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 3.0e-19 99.4 89 65.2
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 4.0e-19 99.0 94 60.6
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 5.2e-19 98.6 91 60.4
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 5.2e-19 98.6 93 62.4
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 5.2e-19 98.6 94 66.0
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 6.8e-19 98.2 93 59.1
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 6.8e-19 98.2 89 62.9
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 1.2e-18 97.4 93 65.6
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 1.5e-18 97.1 93 65.6
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.0e-18 96.7 91 61.5
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 2.0e-18 96.7 91 59.3
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 2.6e-18 96.3 89 61.8
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 3.4e-18 95.9 93 64.5
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 4.4e-18 95.5 92 67.4
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 5.7e-18 95.1 91 60.4
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 5.7e-18 95.1 90 62.2
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 9.8e-18 94.4 90 64.4
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 9.8e-18 94.4 90 64.4
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 9.8e-18 94.4 90 64.4
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 9.8e-18 94.4 90 62.2
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 1.7e-17 93.6 92 62.0
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 1.7e-17 93.6 95 60.0
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 1.7e-17 93.6 99 61.6
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 2.9e-17 92.8 92 57.6
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 2.9e-17 92.8 92 57.6
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 2.9e-17 92.8 92 57.6
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 2.9e-17 92.8 91 58.2
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 4.9e-17 92.0 93 64.5
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 6.4e-17 91.7 92 66.3
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 1.1e-16 90.9 98 56.1
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 2.4e-16 89.7 93 57.0
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 3.2e-16 89.4 92 56.5
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 3.2e-16 89.4 92 56.5
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 5.4e-16 88.6 89 65.2
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 5.4e-16 88.6 92 56.5
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 5.4e-16 88.6 88 62.5
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 1.2e-15 87.4 86 57.0
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 1.2e-15 87.4 86 57.0
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 1.6e-15 87.0 91 57.1
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 2.7e-15 86.3 89 57.3
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 4.6e-15 85.5 91 62.6
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 5.9e-15 85.1 91 57.1
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 5.9e-15 85.1 90 55.6
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 5.9e-15 85.1 92 58.7
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 5.9e-15 85.1 91 57.1
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 2.3e-14 83.2 89 58.4
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 3.0e-14 82.8 91 57.1
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 3.9e-14 82.4 95 53.7
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 3.9e-14 82.4 87 57.5
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 1.1e-13 80.9 91 53.8
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 1.1e-13 80.9 88 58.0
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 1.5e-13 80.5 59 76.3
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 5.6e-13 78.6 90 54.4
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 5.6e-13 78.6 88 56.8
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 7.3e-13 78.2 86 57.0
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 1.2e-12 77.4 91 53.8
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 1.2e-12 77.4 107 46.7
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 1.6e-12 77.0 89 55.1
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 2.1e-12 76.6 85 60.0
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 3.6e-12 75.9 75 68.0
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 4.7e-12 75.5 88 55.7
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 6.2e-12 75.1 83 60.2
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 1.4e-11 73.9 96 53.1
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 1.8e-11 73.6 89 52.8
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.3e-11 73.2 90 53.3
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 3.1e-11 72.8 80 53.8
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 3.1e-11 72.8 91 53.8
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 4.0e-11 72.4 90 55.6
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 5.2e-11 72.0 88 50.0
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 6.8e-11 71.6 50 74.0
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 5.8e-10 68.6 93 50.5
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 1.3e-09 67.4 85 54.1
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 4.9e-09 65.5 79 51.9
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 6.4e-09 65.1 83 49.4
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 1.1e-08 64.3 40 82.5
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 2.4e-08 63.2 50 64.0
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 1.6e-07 60.5 29 96.6
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 2.0e-07 60.1 40 70.0
Zm00001eb433440 Zea mays HOM05D006766 ORTHO05D008534 7.8e-07 58.2 95 44.2
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 2.3e-06 56.6 92 44.6
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 2.3e-06 56.6 52 55.8
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 2.3e-06 56.6 56 53.6
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 2.3e-06 56.6 53 60.4
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 3.9e-06 55.8 63 47.6
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 6.6e-06 55.1 129 34.1
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 6.6e-06 55.1 129 34.1
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 6.6e-06 55.1 87 43.7
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 6.6e-06 55.1 95 45.3
Zm00001eb433450 Zea mays HOM05D006766 ORTHO05D008534 8.6e-06 54.7 95 48.4


User provided reference genes

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