Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004994 Carpinus fangiana HOM05D005605 ORTHO05D007615 7.6e-162 573.9 323 100.0
Haze_02436 Corylus avellana HOM05D005605 ORTHO05D007615 1.0e-33 148.3 156 58.3
Haze_02444 Corylus avellana HOM05D005605 ORTHO05D007615 3.3e-32 143.3 157 58.0
Haze_02443 Corylus avellana HOM05D005605 ORTHO05D007615 4.3e-32 142.9 124 62.1
Cfa004997 Carpinus fangiana HOM05D005605 ORTHO05D007615 1.4e-27 127.9 319 37.0
Haze_02388 Corylus avellana HOM05D005605 ORTHO05D007615 1.6e-23 114.4 70 90.0
CiPaw.05G064700 Carya illinoinensis HOM05D005605 ORTHO05D007615 3.8e-20 103.2 70 72.9
Cfa005162 Carpinus fangiana HOM05D000256 ORTHO05D000119 1.9e-19 100.9 107 53.3
Lj3g0011747 Lotus japonicus HOM05D005605 ORTHO05D007615 2.7e-18 97.1 72 66.7
QL11p043893 Quercus lobata HOM05D005605 ORTHO05D007615 7.9e-18 95.5 75 65.3
TWI31G1015 Tripterygium wilfordii HOM05D005605 ORTHO05D007615 1.3e-17 94.7 75 65.3
Psat7g141400 Pisum sativum HOM05D005605 ORTHO05D007615 5.1e-17 92.8 72 66.7
TPR.G19396 Trifolium pratense HOM05D005605 ORTHO05D007615 8.7e-17 92.0 72 65.3
Cpa.g.sc62.154 Carica papaya HOM05D005605 ORTHO05D007615 1.5e-16 91.3 91 58.2
Ca_20877_v3 Cicer arietinum L. HOM05D005605 ORTHO05D007615 2.5e-16 90.5 72 65.3
Hma1.2p1_0066F.1_g036390 Hydrangea macrophylla HOM05D005605 ORTHO05D007615 3.3e-16 90.1 72 63.9
Phvul.011G045100 Phaseolus vulgaris HOM05D005605 ORTHO05D007615 3.3e-16 90.1 74 60.8
Lalb_Chr03g0025671 Lupinus albus HOM05D005605 ORTHO05D007615 5.7e-16 89.4 72 63.9
Glyma.11G117700 Glycine max HOM05D005605 ORTHO05D007615 7.4e-16 89.0 73 63.0
Medtr4g070060 Medicago truncatula HOM05D005605 ORTHO05D007615 1.6e-15 87.8 72 65.3
VMungo1127G2130 Vigna mungo HOM05D005605 ORTHO05D007615 3.7e-15 86.7 77 64.9
Glyma.12G043100 Glycine max HOM05D005605 ORTHO05D007615 6.3e-15 85.9 73 67.1
vmacro02103 Vaccinium macrocarpon HOM05D005605 ORTHO05D007615 8.2e-15 85.5 82 53.7
arahy.Tifrunner.gnm1.ann1.XL89DC Arachis hypogaea HOM05D005605 ORTHO05D007615 1.1e-14 85.1 87 52.9
CANSAT01G2366 Cannabis sativa HOM05D005605 ORTHO05D007615 1.4e-14 84.7 73 60.3
ClCG02G005000 Citrullus lanatus HOM05D005605 ORTHO05D007615 3.1e-14 83.6 93 52.7
Rhsim11G0177400 Rhododendron simsii HOM05D005605 ORTHO05D007615 3.1e-14 83.6 82 51.2
CSS0012215 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 6.9e-14 82.4 83 54.2
CSS0037419 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 6.9e-14 82.4 83 54.2
CsaV3_7G023590 Cucumis sativus L. HOM05D005605 ORTHO05D007615 9.0e-14 82.0 73 58.9
THA.LOC104824826 Tarenaya hassleriana HOM05D005605 ORTHO05D007615 9.0e-14 82.0 72 61.1
Dinv23519 Davidia involucrata HOM05D005605 ORTHO05D007615 1.2e-13 81.6 83 49.4
AT2G21710 Arabidopsis thaliana HOM05D005605 ORTHO05D007615 2.0e-13 80.9 69 59.4
Carub.0004s0075 Capsella rubella HOM05D005605 ORTHO05D007615 2.0e-13 80.9 69 60.9
Thhalv10000085m.g Eutrema salsugineum HOM05D005605 ORTHO05D007615 3.4e-13 80.1 69 60.9
CSS0010527 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 4.5e-13 79.7 83 54.2
CSS0044100 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 4.5e-13 79.7 83 54.2
Sp4g00860 Schrenkiella parvula HOM05D005605 ORTHO05D007615 4.5e-13 79.7 69 58.0
Solyc01g109630.4 Solanum lycopersicum HOM05D005605 ORTHO05D007615 4.5e-13 79.7 82 46.3
AL4G10940 Arabidopsis lyrata HOM05D005605 ORTHO05D007615 5.9e-13 79.3 69 60.9
arahy.Tifrunner.gnm1.ann1.IZ1QNN Arachis hypogaea HOM05D005605 ORTHO05D007615 5.9e-13 79.3 94 52.1
A09p58000 Brassica napus HOM05D005605 ORTHO05D007615 1.0e-12 78.6 69 60.9
BraA09t41190Z Brassica rapa HOM05D005605 ORTHO05D007615 1.0e-12 78.6 69 60.9
Lsat_1_v5_gn_1_111380 Lactuca sativa HOM05D005605 ORTHO05D007615 1.0e-12 78.6 70 55.7
BcaC07g41121 Brassica carinata HOM05D005605 ORTHO05D007615 1.3e-12 78.2 69 62.3
BolC8t51688H Brassica oleracea HOM05D005605 ORTHO05D007615 1.3e-12 78.2 69 62.3
Aa31LG7G14820 Aethionema arabicum HOM05D005605 ORTHO05D007615 2.2e-12 77.4 71 57.7
MELO3C012521.2 Cucumis melo HOM05D005605 ORTHO05D007615 2.9e-12 77.0 73 58.9
HanXRQChr11g0343841 Helianthus annuus HOM05D005605 ORTHO05D007615 2.9e-12 77.0 71 54.9
Sopen01g051820 Solanum pennellii HOM05D005605 ORTHO05D007615 5.0e-12 76.3 82 45.1
PGSC0003DMG400000727 Solanum tuberosum HOM05D005605 ORTHO05D007615 5.0e-12 76.3 82 45.1
C08p41210 Brassica napus HOM05D005605 ORTHO05D007615 6.5e-12 75.9 73 65.8
BcaB08g35002 Brassica carinata HOM05D005605 ORTHO05D007615 8.5e-12 75.5 69 60.9
MD05G1181700 Malus domestica HOM05D000256 ORTHO05D000119 2.5e-11 73.9 104 38.5
Prupe.8G208500 Prunus persica HOM05D000256 ORTHO05D000119 2.7e-10 70.5 102 39.2
TAR628G1411 Trochodendron aralioides HOM05D005605 ORTHO05D007615 3.6e-10 70.1 83 51.8
DCAR_001580 Daucus carota HOM05D005605 ORTHO05D007615 7.9e-10 68.9 77 53.2
Eucgr.I01271 Eucalyptus grandis HOM05D005605 ORTHO05D007615 7.9e-10 68.9 75 53.3
Cfa002526 Carpinus fangiana HOM05D000256 ORTHO05D000119 1.8e-09 67.8 90 41.1
Cfa002525 Carpinus fangiana HOM05D000256 ORTHO05D000119 2.3e-09 67.4 90 40.0
Sed0006971 Sechium edule HOM05D005605 ORTHO05D007615 5.1e-09 66.2 73 53.4
Rhsim07G0028500 Rhododendron simsii HOM05D005605 ORTHO05D007615 6.7e-09 65.9 82 46.3
EL10Ac9g21723 Beta vulgaris HOM05D005605 ORTHO05D007615 1.5e-08 64.7 82 45.1
Prupe.8G208600 Prunus persica HOM05D000256 ORTHO05D000119 1.5e-08 64.7 95 34.7
Duzib187G0996 Durio zibethinus HOM05D000256 ORTHO05D000119 1.9e-08 64.3 95 40.0
Nn5g29612 Nelumbo nucifera HOM05D005605 ORTHO05D007615 4.3e-08 63.2 70 45.7
Gohir.D13G032600 Gossypium hirsutum HOM05D005605 ORTHO05D007615 5.7e-08 62.8 72 45.8
Gorai.013G037000 Gossypium raimondii HOM05D005605 ORTHO05D007615 5.7e-08 62.8 72 45.8
PSO541G1874 Papaver somniferum HOM05D005605 ORTHO05D007615 7.4e-08 62.4 72 48.6
Thecc.01G232200 Theobroma cacao HOM05D000256 ORTHO05D000119 7.4e-08 62.4 93 40.9
FvH4_2g19740 Fragaria vesca HOM05D000256 ORTHO05D000119 1.7e-07 61.2 96 34.4
Gohir.A13G034200 Gossypium hirsutum HOM05D005605 ORTHO05D007615 1.7e-07 61.2 72 44.4
FAN24G0177 Fragaria x ananassa HOM05D000070 ORTHO05D003190 2.2e-07 60.8 96 34.4
CiPaw.04G107900 Carya illinoinensis HOM05D000256 ORTHO05D000119 4.8e-07 59.7 84 39.3
PSO675G3023 Papaver somniferum HOM05D005605 ORTHO05D007615 4.8e-07 59.7 72 47.2
Migut.F01934 Erythranthe guttata HOM05D000256 ORTHO05D000119 6.3e-07 59.3 76 32.9
Cfa002527 Carpinus fangiana HOM05D000256 ORTHO05D000119 8.2e-07 58.9 113 36.3
Ah.01g006280 Amaranthus hybridus HOM05D005605 ORTHO05D007615 1.1e-06 58.5 167 29.9
MSTRG.20083 Avicennia marina HOM05D005605 ORTHO05D007615 1.1e-06 58.5 76 43.4
Ciclev10024107m.g Citrus clementina HOM05D000256 ORTHO05D000119 1.4e-06 58.2 99 32.3
Migut.B00234 Erythranthe guttata HOM05D005605 ORTHO05D007615 1.4e-06 58.2 76 43.4
Ciclev10023991m.g Citrus clementina HOM05D000256 ORTHO05D000119 1.8e-06 57.8 89 33.7
Sed0011653 Sechium edule HOM05D000256 ORTHO05D000119 1.8e-06 57.8 83 37.3
Manes.17G101300 Manihot esculenta HOM05D005605 ORTHO05D007615 4.1e-06 56.6 76 47.4
Hund00267 Selenicereus undatus HOM05D005605 ORTHO05D007615 4.1e-06 56.6 73 47.9
Duzib052G1004 Durio zibethinus HOM05D005605 ORTHO05D007615 5.3e-06 56.2 75 46.7
CAN.G1412.8 Capsicum annuum HOM05D005605 ORTHO05D007615 6.9e-06 55.8 72 45.8
MELO3C033636.2 Cucumis melo HOM05D000256 ORTHO05D000119 6.9e-06 55.8 83 36.1
CsaV3_7G025520 Cucumis sativus L. HOM05D000256 ORTHO05D000119 6.9e-06 55.8 92 35.9
FAN10G1492 Fragaria x ananassa HOM05D000256 ORTHO05D000119 9.1e-06 55.5 172 26.7


User provided reference genes

Program Settings