Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 0.0e+00 1396.7 696 100.0
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 0.0e+00 1191.4 732 84.8
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 4.4e-223 778.5 759 59.7
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 2.1e-209 733.0 751 57.1
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.3e-182 644.0 749 54.2
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 1.3e-150 537.7 741 46.8
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.0e-147 528.1 727 48.1
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 2.0e-143 513.8 722 47.9
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 3.4e-143 513.1 719 48.4
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 9.9e-143 511.5 752 44.1
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 4.6e-140 502.7 732 44.8
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 5.1e-139 499.2 732 44.8
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 7.4e-138 495.4 748 44.4
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 2.9e-134 483.4 747 43.5
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 2.9e-134 483.4 696 47.4
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 8.4e-134 481.9 798 42.5
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.9e-133 480.7 741 45.1
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 9.3e-133 478.4 744 43.7
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 3.3e-130 469.9 770 42.6
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 4.3e-130 469.5 726 45.7
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 2.6e-127 460.3 746 42.6
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 1.9e-125 454.1 751 41.1
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.1e-122 444.9 760 42.6
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 9.1e-120 435.3 748 41.6
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 1.0e-118 431.8 769 41.0
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 7.9e-116 422.2 714 43.1
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 2.3e-115 420.6 727 42.0
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 1.1e-112 411.8 760 39.3
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.8e-112 411.0 770 40.5
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 2.5e-109 400.6 700 42.1
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.1e-106 391.7 709 41.0
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 2.0e-106 391.0 398 58.5
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 4.4e-106 389.8 708 41.7
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 7.4e-106 389.0 797 38.0
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 9.7e-106 388.7 742 41.5
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.7e-105 387.9 711 40.9
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 8.2e-105 385.6 718 39.7
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 1.8e-99 367.9 754 40.7
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 3.4e-98 363.6 710 40.6
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 1.3e-94 351.7 754 36.3
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 6.5e-94 349.4 746 36.3
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 3.6e-92 343.6 751 36.5
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 1.5e-90 338.2 756 36.2
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 2.6e-90 337.4 711 37.8
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 1.3e-89 335.1 758 36.3
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 8.3e-89 332.4 723 35.4
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 4.1e-88 330.1 754 35.7
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 1.1e-85 322.0 509 44.2
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 8.0e-84 315.8 747 35.1
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 1.5e-82 311.6 751 34.6
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 4.4e-82 310.1 707 36.8
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 2.2e-81 307.8 739 35.0
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 1.3e-78 298.5 753 35.1
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 1.7e-78 298.1 726 35.0
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 1.5e-77 295.0 755 34.6
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 1.4e-75 288.5 762 36.6
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 7.5e-74 282.7 724 34.5
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.2e-73 281.2 583 37.4
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 7.0e-72 276.2 398 46.2
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 2.0e-71 274.6 744 33.1
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.7e-71 274.2 709 34.4
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 6.0e-71 273.1 702 34.9
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 5.0e-70 270.0 744 32.3
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 5.0e-70 270.0 709 34.6
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 5.6e-69 266.5 708 33.6
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 5.2e-67 260.0 735 32.9
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.7e-65 255.0 727 33.3
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 2.2e-65 254.6 465 40.0
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.9e-65 254.2 667 32.4
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 1.2e-63 248.8 737 32.6
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 3.5e-63 247.3 727 32.0
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 4.6e-63 246.9 714 33.8
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.0e-62 245.7 385 44.9
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.9e-61 241.5 712 32.4
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 5.8e-58 229.9 467 35.8
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.2e-56 224.2 462 37.0
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 2.1e-55 221.5 530 36.8
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 4.6e-55 220.3 488 36.9
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 6.6e-54 216.5 728 31.0
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.3e-53 214.2 516 35.1
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.4e-51 208.0 506 33.6
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 1.3e-49 202.2 472 35.4
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.9e-48 198.4 423 38.8
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.7e-46 191.8 214 50.0
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 8.1e-44 183.0 491 32.8
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 2.4e-43 181.4 320 41.6
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 3.1e-43 181.0 706 29.9
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 9.0e-43 179.5 485 32.4
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.2e-42 179.1 433 34.6
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 1.1e-40 172.6 394 35.0
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 5.4e-40 170.2 695 29.6
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 5.4e-40 170.2 459 32.7
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 7.1e-40 169.9 393 35.1
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 9.3e-40 169.5 637 27.9
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 2.7e-39 167.9 634 29.2
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.7e-38 165.2 391 35.5
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.7e-38 165.2 245 44.1
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 6.6e-38 163.3 389 35.0
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 6.6e-38 163.3 246 44.7
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 4.3e-37 160.6 625 29.1
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 4.8e-36 157.1 392 33.4
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.5e-34 152.1 392 32.7
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.5e-34 152.1 392 32.7
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 1.5e-34 152.1 355 34.4
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 2.2e-33 148.3 344 35.2
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 2.9e-33 147.9 392 31.6
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 5.4e-32 143.7 425 30.8
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 5.4e-32 143.7 425 30.8
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 9.3e-32 142.9 243 39.9
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 6.0e-31 140.2 342 33.9
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 1.9e-29 135.2 396 33.6
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 1.9e-29 135.2 396 33.6
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 1.9e-29 135.2 396 33.6
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 9.6e-29 132.9 393 32.8
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 8.1e-28 129.8 305 39.7
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.4e-27 129.0 390 32.6
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 4.0e-27 127.5 220 41.4
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 5.5e-24 117.1 706 23.5
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.6e-23 115.5 225 34.7
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 3.5e-23 114.4 204 38.7
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 7.4e-21 106.7 328 29.6
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.6e-18 98.2 168 38.7
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.1e-16 92.8 101 47.5
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 4.6e-15 87.4 53 81.1
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 2.3e-14 85.1 282 28.4
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 8.7e-14 83.2 328 28.4
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 8.7e-14 83.2 328 28.4
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 4.3e-13 80.9 291 28.2
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 1.6e-12 79.0 213 32.9
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 1.4e-11 75.9 83 42.2
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.4e-11 75.1 182 34.1
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 6.9e-11 73.6 207 30.9
ATR0568G035 Amborella trichopoda HOM05D007001 ORTHO05D005587 1.2e-10 72.8 254 29.5
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 1.2e-10 72.8 638 23.0
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 2.6e-10 71.6 208 32.2
Zm00001eb342970 Zea mays HOM05D024721 ORTHO05D025980 5.9e-10 70.5 304 26.6
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 1.1e-08 66.2 71 43.7
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 2.5e-08 65.1 496 25.4
Os05g0552100 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 7.2e-08 63.5 288 26.0
MBI16_g35576_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.2e-07 62.8 74 45.9


User provided reference genes

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