Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004963 Carpinus fangiana HOM05D007602 ORTHO05D009086 8.1e-24 112.8 55 100.0
Haze_02438 Corylus avellana HOM05D007602 ORTHO05D009086 3.4e-22 107.5 53 96.2
CiPaw.05G059500 Carya illinoinensis HOM05D007602 ORTHO05D009086 6.5e-21 103.2 55 89.1
ClCG09G017780 Citrullus lanatus HOM05D007602 ORTHO05D009086 8.4e-21 102.8 55 89.1
MELO3C021943.2 Cucumis melo HOM05D007602 ORTHO05D009086 2.5e-20 101.3 55 87.3
CsaV3_2G014370 Cucumis sativus L. HOM05D007602 ORTHO05D009086 2.5e-20 101.3 55 87.3
Potri.004G149200 Populus trichocarpa HOM05D007602 ORTHO05D009086 2.5e-20 101.3 55 87.3
Duzib132G1115 Durio zibethinus HOM05D007602 ORTHO05D009086 5.5e-20 100.1 55 83.6
Manes.17G097600 Manihot esculenta HOM05D007602 ORTHO05D009086 7.1e-20 99.8 55 81.8
Manes.15G146500 Manihot esculenta HOM05D007602 ORTHO05D009086 9.3e-20 99.4 55 81.8
Sed0020423 Sechium edule HOM05D007602 ORTHO05D009086 9.3e-20 99.4 55 85.5
Potri.009G110100 Populus trichocarpa HOM05D007602 ORTHO05D009086 1.2e-19 99.0 55 83.6
Gohir.A04G129200 Gossypium hirsutum HOM05D007602 ORTHO05D009086 1.6e-19 98.6 55 80.0
Gorai.012G163800 Gossypium raimondii HOM05D007602 ORTHO05D009086 1.6e-19 98.6 55 80.0
CANSAT25G1814 Cannabis sativa HOM05D007602 ORTHO05D009086 2.1e-19 98.2 55 83.6
Duzib248G0323 Durio zibethinus HOM05D007602 ORTHO05D009086 2.7e-19 97.8 55 81.8
Duzib248G0595 Durio zibethinus HOM05D007602 ORTHO05D009086 2.7e-19 97.8 55 81.8
Duzib248G1495 Durio zibethinus HOM05D007602 ORTHO05D009086 2.7e-19 97.8 55 81.8
Prupe.8G107900 Prunus persica HOM05D007602 ORTHO05D009086 2.7e-19 97.8 55 83.6
Sabra04G0099200 Salix brachista HOM05D007602 ORTHO05D009086 2.7e-19 97.8 53 84.9
Gohir.A04G129300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 3.5e-19 97.4 55 80.0
Gohir.D04G174400 Gossypium hirsutum HOM05D007602 ORTHO05D009086 3.5e-19 97.4 55 80.0
Gorai.012G163900 Gossypium raimondii HOM05D007602 ORTHO05D009086 3.5e-19 97.4 55 80.0
Thecc.08G131300 Theobroma cacao HOM05D007602 ORTHO05D009086 4.6e-19 97.1 55 80.0
Ciclev10029767m.g Citrus clementina HOM05D007602 ORTHO05D009086 6.0e-19 96.7 55 81.8
PGR042G2915 Punica granatum HOM05D007602 ORTHO05D009086 7.9e-19 96.3 55 81.8
Gohir.D04G174300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 1.0e-18 95.9 55 78.2
Gorai.004G104500 Gossypium raimondii HOM05D007602 ORTHO05D009086 1.0e-18 95.9 55 78.2
Glyma.11G122300 Glycine max HOM05D007602 ORTHO05D009086 1.3e-18 95.5 55 81.8
COL.COLO4_17788 Corchorus olitorius HOM05D007602 ORTHO05D009086 1.8e-18 95.1 55 80.0
Lj3g0015904 Lotus japonicus HOM05D007602 ORTHO05D009086 2.3e-18 94.7 55 80.0
Phvul.011G049200 Phaseolus vulgaris HOM05D007602 ORTHO05D009086 2.3e-18 94.7 55 80.0
Ca_07356_v3 Cicer arietinum L. HOM05D007602 ORTHO05D009086 3.0e-18 94.4 55 80.0
Migut.B00282 Erythranthe guttata HOM05D007602 ORTHO05D009086 3.0e-18 94.4 55 80.0
Glyma.12G047200 Glycine max HOM05D007602 ORTHO05D009086 3.0e-18 94.4 55 80.0
Thecc.02G030000 Theobroma cacao HOM05D007602 ORTHO05D009086 3.9e-18 94.0 55 76.4
Lalb_Chr03g0025901 Lupinus albus HOM05D007602 ORTHO05D009086 8.7e-18 92.8 55 78.2
Medtr4g068710 Medicago truncatula HOM05D007602 ORTHO05D009086 8.7e-18 92.8 55 78.2
Carub.0001s3861 Capsella rubella HOM05D007602 ORTHO05D009086 1.1e-17 92.4 55 76.4
Cpa.g.sc62.91 Carica papaya HOM05D007602 ORTHO05D009086 1.1e-17 92.4 55 80.0
Solyc01g109220.4 Solanum lycopersicum HOM05D007602 ORTHO05D009086 1.1e-17 92.4 55 74.5
PGSC0003DMG400025161 Solanum tuberosum HOM05D007602 ORTHO05D009086 1.1e-17 92.4 55 74.5
Hma1.2p1_0584F.1_g183350 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 1.5e-17 92.0 54 75.9
Oeu007232.1 Olea europaea HOM05D007602 ORTHO05D009086 1.5e-17 92.0 55 78.2
Sed0019655 Sechium edule HOM05D007602 ORTHO05D009086 1.5e-17 92.0 55 76.4
Lalb_Chr01g0002891 Lupinus albus HOM05D007602 ORTHO05D009086 1.9e-17 91.7 55 76.4
VMungo1127G0479 Vigna mungo HOM05D007602 ORTHO05D009086 3.3e-17 90.9 51 84.3
AL1G56570 Arabidopsis lyrata HOM05D007602 ORTHO05D009086 4.3e-17 90.5 55 72.7
CAN.G322.99 Capsicum annuum HOM05D007602 ORTHO05D009086 4.3e-17 90.5 55 72.7
CARHR039420 Cardamine hirsuta HOM05D007602 ORTHO05D009086 4.3e-17 90.5 55 74.5
Glyma.12G082000 Glycine max HOM05D007602 ORTHO05D009086 4.3e-17 90.5 53 79.2
Lsat_1_v5_gn_9_109200 Lactuca sativa HOM05D007602 ORTHO05D009086 5.7e-17 90.1 54 75.9
MD10G1085000 Malus domestica HOM05D007602 ORTHO05D009086 9.6e-17 89.4 55 81.8
AT1G49410 Arabidopsis thaliana HOM05D007602 ORTHO05D009086 1.3e-16 89.0 55 72.7
CSS0038117 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 2.8e-16 87.8 55 70.9
Thhalv10011932m.g Eutrema salsugineum HOM05D007602 ORTHO05D009086 2.8e-16 87.8 55 72.7
THA.LOC104798806 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 3.7e-16 87.4 55 72.7
THA.LOC104808449 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 3.7e-16 87.4 55 72.7
Hma1.2p1_1353F.1_g277670 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 4.8e-16 87.0 55 70.9
Hma1.2p1_2724F.1_g327525 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 4.8e-16 87.0 55 70.9
BcaB02g11073 Brassica carinata HOM05D007602 ORTHO05D009086 6.2e-16 86.7 55 69.1
Lj5E203T0 Lonicera japonica HOM05D007602 ORTHO05D009086 1.1e-15 85.9 55 70.9
TWI31G0092 Tripterygium wilfordii HOM05D007602 ORTHO05D009086 1.4e-15 85.5 55 74.5
FAN20G1774 Fragaria x ananassa HOM05D007602 ORTHO05D009086 1.8e-15 85.1 52 75.0
MD00G1073700 Malus domestica HOM05D007602 ORTHO05D009086 1.8e-15 85.1 55 80.0
Nn6g32178 Nelumbo nucifera HOM05D007602 ORTHO05D009086 2.4e-15 84.7 55 72.7
A08p03960 Brassica napus HOM05D007602 ORTHO05D009086 4.0e-15 84.0 55 70.9
BcaB04g17343 Brassica carinata HOM05D007602 ORTHO05D009086 5.3e-15 83.6 55 65.5
RcHm_v2.0_Chr6g0262021 Rosa chinensis HOM05D007602 ORTHO05D009086 6.9e-15 83.2 52 73.1
Aa31LG10G4570 Aethionema arabicum HOM05D007602 ORTHO05D009086 2.0e-14 81.6 56 71.4
Glyma.16G059100 Glycine max HOM05D007602 ORTHO05D009086 2.6e-14 81.3 51 74.5
Nn5g29445 Nelumbo nucifera HOM05D007602 ORTHO05D009086 7.6e-14 79.7 55 69.1
TAR381G0702 Trochodendron aralioides HOM05D007602 ORTHO05D009086 1.0e-13 79.3 55 67.3
Atru.chr12.1346 Acer truncatum HOM05D007602 ORTHO05D009086 1.3e-13 79.0 48 72.9
ECA240G4508 Erigeron canadensis HOM05D007602 ORTHO05D009086 1.3e-13 79.0 52 71.2
Sabra09G0084100 Salix brachista HOM05D007602 ORTHO05D009086 1.1e-12 75.9 44 84.1
SGA_v2.0_scaffold32G13134 Striga asiatica HOM05D000790 ORTHO05D000769 1.1e-12 75.9 49 71.4
unitig_21.g20769 Utricularia gibba HOM05D007602 ORTHO05D009086 2.5e-12 74.7 40 85.0
BcaC07g37055 Brassica carinata HOM05D003421 ORTHO05D009086 9.3e-12 72.8 46 71.7
DCAR_022083 Daucus carota HOM05D007602 ORTHO05D009086 9.3e-12 72.8 55 63.6
MD11G1171200 Malus domestica HOM05D007602 ORTHO05D009086 1.6e-11 72.0 47 74.5
HPP92_000754 Vanilla planifolia HOM05D001821 ORTHO05D009086 1.8e-10 68.6 55 58.2
Sopen10g022680 Solanum pennellii HOM05D000002 ORTHO05D000001 6.7e-10 66.6 47 63.8
Aa31LG8G5770 Aethionema arabicum HOM05D000086 ORTHO05D008850 8.7e-10 66.2 55 56.4
AUR62037762 Chenopodium quinoa HOM05D007602 ORTHO05D009086 2.5e-09 64.7 47 63.8
Nitab4.5_0003281g0040 Nicotiana tabacum HOM05D007602 ORTHO05D009086 2.5e-09 64.7 35 80.0
Nitab4.5_0003816g0110 Nicotiana tabacum HOM05D007602 ORTHO05D009086 2.5e-09 64.7 35 80.0
SHI05446 Sapria himalayana HOM05D007602 ORTHO05D009086 5.7e-09 63.5 36 80.6
AUR62038779 Chenopodium quinoa HOM05D007602 ORTHO05D009086 7.4e-09 63.2 55 58.2
CSS0032371 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 1.3e-08 62.4 35 80.0
vmacro19447 Vaccinium macrocarpon HOM05D007602 ORTHO05D009086 1.3e-08 62.4 40 75.0
Peaxi162Scf00016g01124 Petunia axillaris HOM05D007602 ORTHO05D009086 2.8e-08 61.2 34 76.5
Ah.01g019750 Amaranthus hybridus HOM05D007602 ORTHO05D009086 1.8e-07 58.5 40 70.0
vmacro23386 Vaccinium macrocarpon HOM05D007602 ORTHO05D009086 1.8e-07 58.5 33 78.8
Mapoly0014s0113 Marchantia polymorpha HOM05D007602 ORTHO05D009086 3.4e-06 54.3 52 46.2
Os03g0626200 Oryza sativa ssp. japonica HOM05D007602 ORTHO05D009086 7.7e-06 53.1 52 48.1
Pp3c6_6800 Physcomitrium patens HOM05D007602 ORTHO05D009086 7.7e-06 53.1 54 42.6
Psat7g206800 Pisum sativum HOM05D007602 ORTHO05D009086 1.0e-05 52.8 32 75.0


User provided reference genes

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