Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004952 Carpinus fangiana HOM05D008520 ORTHO05D009890 7.6e-33 143.3 74 100.0
Haze_02458 Corylus avellana HOM05D008520 ORTHO05D009890 1.1e-28 129.4 76 90.8
Cfa004950 Carpinus fangiana HOM05D008520 ORTHO05D009890 3.3e-28 127.9 74 93.2
Haze_02459 Corylus avellana HOM05D008520 ORTHO05D009890 2.0e-25 118.6 71 90.1
CiPaw.06G139100 Carya illinoinensis HOM05D012043 ORTHO05D009890 2.4e-15 85.1 77 64.9
QL11p039275 Quercus lobata HOM05D008520 ORTHO05D009890 5.4e-15 84.0 75 66.7
Phvul.011G050000 Phaseolus vulgaris HOM05D008520 ORTHO05D009890 1.3e-13 79.3 73 61.6
Potri.004G148200 Populus trichocarpa HOM05D008520 ORTHO05D009890 1.9e-12 75.5 72 63.9
Glyma.07G163300 Glycine max HOM05D008520 ORTHO05D009890 2.5e-12 75.1 78 61.5
Lj3g0002198 Lotus japonicus HOM05D008520 ORTHO05D009890 1.3e-11 72.8 76 57.9
Thecc.02G029000 Theobroma cacao HOM05D008520 ORTHO05D009890 1.3e-11 72.8 72 59.7
Glyma.11G123300 Glycine max HOM05D008520 ORTHO05D009890 2.8e-11 71.6 73 60.3
Gohir.D01G172800 Gossypium hirsutum HOM05D008520 ORTHO05D009890 6.2e-11 70.5 73 54.8
Gorai.002G214400 Gossypium raimondii HOM05D008520 ORTHO05D009890 6.2e-11 70.5 73 54.8
Glyma.20G008300 Glycine max HOM05D008520 ORTHO05D009890 8.1e-11 70.1 74 59.5
Manes.17G096900 Manihot esculenta HOM05D012043 ORTHO05D009890 8.1e-11 70.1 74 58.1
Ciclev10029754m.g Citrus clementina HOM05D008520 ORTHO05D009890 1.4e-10 69.3 74 56.8
COL.COLO4_17779 Corchorus olitorius HOM05D008520 ORTHO05D009890 1.8e-10 68.9 73 52.1
Glyma.12G048000 Glycine max HOM05D008520 ORTHO05D009890 4.0e-10 67.8 76 51.3
Ca_12478_v3 Cicer arietinum L. HOM05D008520 ORTHO05D009890 5.3e-10 67.4 76 55.3
Gohir.A01G181700 Gossypium hirsutum HOM05D008520 ORTHO05D009890 5.3e-10 67.4 73 53.4
Medtr1g034290 Medicago truncatula HOM05D008520 ORTHO05D009890 5.3e-10 67.4 76 53.9
Ciclev10029756m.g Citrus clementina HOM05D008520 ORTHO05D009890 1.5e-09 65.9 72 55.6
TAR628G1249 Trochodendron aralioides HOM05D008520 ORTHO05D009890 2.0e-09 65.5 83 51.8
Lj2g0022497 Lotus japonicus HOM05D008520 ORTHO05D009890 4.5e-09 64.3 76 53.9
A03p45660 Brassica napus HOM05D011423 ORTHO05D009890 7.6e-09 63.5 72 43.1
BraA03t13698Z Brassica rapa HOM05D011423 ORTHO05D009890 7.6e-09 63.5 72 43.1
Atru.chr5.2897 Acer truncatum HOM05D008520 ORTHO05D009890 1.0e-08 63.2 72 48.6
arahy.Tifrunner.gnm1.ann1.4L7A6H Arachis hypogaea HOM05D008520 ORTHO05D009890 1.3e-08 62.8 76 50.0
arahy.Tifrunner.gnm1.ann1.H0FE8D Arachis hypogaea HOM05D008520 ORTHO05D009890 1.3e-08 62.8 76 50.0
Medtr1g034270 Medicago truncatula HOM05D008520 ORTHO05D009890 1.3e-08 62.8 74 47.3
Manes.15G145900 Manihot esculenta HOM05D008520 ORTHO05D009890 2.2e-08 62.0 77 53.2
AL3G47790 Arabidopsis lyrata HOM05D011423 ORTHO05D009890 8.4e-08 60.1 75 38.7
Lalb_Chr01g0002971 Lupinus albus HOM05D008520 ORTHO05D009890 8.4e-08 60.1 72 48.6
Prupe.8G111600 Prunus persica HOM05D008520 ORTHO05D009890 8.4e-08 60.1 83 54.2
Prupe.8G112200 Prunus persica HOM05D008520 ORTHO05D009890 8.4e-08 60.1 83 54.2
Phvul.003G011000 Phaseolus vulgaris HOM05D012043 ORTHO05D009890 1.1e-07 59.7 75 50.7
Sc18g0004830 Simmondsia chinensis HOM05D008520 ORTHO05D009890 1.4e-07 59.3 81 40.7
vmacro02158 Vaccinium macrocarpon HOM05D008520 ORTHO05D009890 1.4e-07 59.3 87 41.4
Eucgr.I01222 Eucalyptus grandis HOM05D012043 ORTHO05D009890 1.9e-07 58.9 81 48.1
Eucgr.L01747 Eucalyptus grandis HOM05D012043 ORTHO05D009890 2.5e-07 58.5 81 48.1
Thhalv10022948m.g Eutrema salsugineum HOM05D011423 ORTHO05D009890 2.5e-07 58.5 75 38.7
Eucgr.I01226 Eucalyptus grandis HOM05D012043 ORTHO05D009890 3.2e-07 58.2 81 48.1
Eucgr.L01741 Eucalyptus grandis HOM05D012043 ORTHO05D009890 3.2e-07 58.2 81 48.1
Eucgr.L01746 Eucalyptus grandis HOM05D012043 ORTHO05D009890 3.2e-07 58.2 81 48.1
Medtr4g068560 Medicago truncatula HOM05D008520 ORTHO05D009890 3.2e-07 58.2 77 48.1
Prupe.8G111400 Prunus persica HOM05D008520 ORTHO05D009890 3.2e-07 58.2 82 52.4
Prupe.8G112000 Prunus persica HOM05D008520 ORTHO05D009890 3.2e-07 58.2 84 50.0
RcHm_v2.0_Chr6g0260831 Rosa chinensis HOM05D008520 ORTHO05D009890 3.2e-07 58.2 89 41.6
Atru.chr5.2895 Acer truncatum HOM05D008520 ORTHO05D009890 4.2e-07 57.8 73 43.8
Prupe.8G111800 Prunus persica HOM05D008520 ORTHO05D009890 4.2e-07 57.8 83 50.6
C03p56720 Brassica napus HOM05D011423 ORTHO05D009890 7.1e-07 57.0 73 41.1
BolC3t17956H Brassica oleracea HOM05D011423 ORTHO05D009890 7.1e-07 57.0 73 41.1
FAN24G0814 Fragaria x ananassa HOM05D008520 ORTHO05D009890 7.1e-07 57.0 91 41.8
Sp3g29250 Schrenkiella parvula HOM05D011423 ORTHO05D009890 7.1e-07 57.0 75 37.3
DCAR_003630 Daucus carota HOM05D059812 ORTHO05D009890 9.3e-07 56.6 72 48.6
FAN05G4777 Fragaria x ananassa HOM05D008520 ORTHO05D009890 9.3e-07 56.6 90 38.9
FAN15G0381 Fragaria x ananassa HOM05D008520 ORTHO05D009890 9.3e-07 56.6 90 38.9
FAN20G0555 Fragaria x ananassa HOM05D008520 ORTHO05D009890 9.3e-07 56.6 90 38.9
Potri.009G109300 Populus trichocarpa HOM05D008520 ORTHO05D009890 9.3e-07 56.6 70 50.0
AT2G15960 Arabidopsis thaliana HOM05D011423 ORTHO05D009890 1.2e-06 56.2 76 36.8
Carub.0003s2983 Capsella rubella HOM05D011423 ORTHO05D009890 1.2e-06 56.2 75 38.7
Gohir.D02G235600 Gossypium hirsutum HOM05D008520 ORTHO05D009890 1.2e-06 56.2 80 43.8
Gorai.005G263700 Gossypium raimondii HOM05D008520 ORTHO05D009890 1.2e-06 56.2 80 43.8
Eucgr.G01538 Eucalyptus grandis HOM05D012043 ORTHO05D009890 1.6e-06 55.8 80 45.0
BcaB08g34619 Brassica carinata HOM05D011423 ORTHO05D009890 2.1e-06 55.5 72 37.5
CARHR106280 Cardamine hirsuta HOM05D011423 ORTHO05D009890 2.7e-06 55.1 79 38.0
Eucgr.G00500 Eucalyptus grandis HOM05D012043 ORTHO05D009890 2.7e-06 55.1 80 43.8
Eucgr.G00503 Eucalyptus grandis HOM05D012043 ORTHO05D009890 2.7e-06 55.1 80 43.8
CSS0029741 Camellia sinensis var. sinensis HOM05D008520 ORTHO05D009890 3.5e-06 54.7 78 39.7
Prupe.8G110900 Prunus persica HOM05D008520 ORTHO05D009890 3.5e-06 54.7 84 48.8
PGSC0003DMG400025953 Solanum tuberosum HOM05D013381 ORTHO05D016352 3.5e-06 54.7 75 44.0
CsaV3_2G014320 Cucumis sativus L. HOM05D020048 ORTHO05D022385 4.6e-06 54.3 77 41.6
Gohir.A03G214100 Gossypium hirsutum HOM05D008520 ORTHO05D009890 4.6e-06 54.3 80 41.2


User provided reference genes

Program Settings