Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004946 Carpinus fangiana HOM05D007083 ORTHO05D008801 4.0e-115 419.9 228 100.0
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 4.0e-83 313.5 229 73.8
Haze_02465 Corylus avellana HOM05D007083 ORTHO05D008801 2.7e-79 300.8 162 96.9
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 4.3e-77 293.5 229 69.9
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 6.0e-63 246.5 229 62.0
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 1.1e-61 242.3 228 57.0
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 1.2e-58 232.3 232 53.9
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 3.4e-58 230.7 229 54.6
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 7.6e-58 229.6 231 55.4
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 3.8e-57 227.3 228 55.3
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 1.1e-56 225.7 233 51.5
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 7.1e-56 223.0 233 50.6
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 1.2e-55 222.2 228 52.6
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 6.0e-55 219.9 228 54.8
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 1.8e-54 218.4 228 53.9
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 1.9e-53 214.9 230 55.7
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 3.3e-53 214.2 228 53.5
Cpa.g.sc109.26 Carica papaya HOM05D007083 ORTHO05D008801 1.3e-52 212.2 229 53.3
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 1.4e-51 208.8 228 51.3
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 1.4e-51 208.8 228 51.3
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 5.3e-51 206.8 228 50.9
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 2.0e-50 204.9 172 60.5
Atru.chr13.1400 Acer truncatum HOM05D007083 ORTHO05D008801 1.4e-48 198.7 219 53.9
Atru.chr5.2875 Acer truncatum HOM05D007083 ORTHO05D008801 3.2e-48 197.6 204 54.9
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 3.5e-47 194.1 228 51.8
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 3.0e-46 191.0 229 49.8
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 3.9e-46 190.7 224 47.3
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 6.7e-46 189.9 172 52.9
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 6.7e-46 189.9 228 48.2
TWI31G0787 Tripterygium wilfordii HOM05D007083 ORTHO05D008801 6.7e-46 189.9 220 49.5
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 4.3e-45 187.2 172 52.3
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 2.8e-44 184.5 224 49.6
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 2.8e-44 184.5 166 56.6
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 8.2e-44 183.0 175 53.1
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 1.2e-42 179.1 172 55.2
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 2.0e-42 178.3 230 48.7
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 5.8e-42 176.8 226 47.8
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 5.8e-42 176.8 169 52.1
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 7.6e-42 176.4 176 52.8
Potri.009G109001 Populus trichocarpa HOM05D007083 ORTHO05D008801 1.7e-41 175.3 161 54.0
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 3.8e-41 174.1 176 50.6
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 3.8e-41 174.1 172 54.1
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 6.5e-41 173.3 177 53.1
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 1.1e-40 172.6 172 50.0
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 1.4e-40 172.2 202 48.0
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 5.5e-40 170.2 202 47.5
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 9.3e-40 169.5 197 47.2
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 9.3e-40 169.5 197 47.2
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 9.3e-40 169.5 197 47.2
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 1.6e-39 168.7 219 45.2
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 2.7e-39 167.9 229 42.8
CsaV3_7G010110 Cucumis sativus L. HOM05D007083 ORTHO05D008801 4.6e-39 167.2 161 55.9
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 4.6e-39 167.2 174 52.3
Sed0019239 Sechium edule HOM05D007083 ORTHO05D008801 4.6e-39 167.2 151 56.3
Medtr4g068360 Medicago truncatula HOM05D007083 ORTHO05D008801 7.9e-39 166.4 174 47.7
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 3.0e-38 164.5 161 54.7
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 3.0e-38 164.5 173 50.3
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 5.1e-38 163.7 173 49.7
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 6.7e-38 163.3 136 56.6
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 8.7e-38 162.9 222 42.8
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 1.1e-37 162.5 174 51.1
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 1.9e-37 161.8 159 52.8
Lsat_1_v5_gn_0_45320 Lactuca sativa HOM05D007083 ORTHO05D008801 5.7e-37 160.2 228 43.9
Lsat_1_v5_gn_5_117460 Lactuca sativa HOM05D007083 ORTHO05D008801 5.7e-37 160.2 228 43.9
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 9.7e-37 159.5 173 49.7
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 9.7e-37 159.5 173 49.7
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 6.3e-36 156.8 178 49.4
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 6.3e-36 156.8 173 50.3
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 3.1e-35 154.5 167 49.1
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 4.1e-35 154.1 176 43.2
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 9.0e-35 152.9 225 41.3
ClCG02G005520 Citrullus lanatus HOM05D007083 ORTHO05D008801 9.0e-35 152.9 198 47.0
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 1.5e-34 152.1 173 45.7
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 7.6e-34 149.8 173 48.6
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 1.3e-33 149.1 170 47.1
COL.COLO4_17774 Corchorus olitorius HOM05D007083 ORTHO05D008801 1.3e-33 149.1 216 44.9
ECA236G1626 Erigeron canadensis HOM05D007083 ORTHO05D008801 1.3e-33 149.1 171 46.8
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 2.2e-33 148.3 175 43.4
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 5.0e-33 147.1 236 44.1
MSTRG.5378 Avicennia marina HOM05D007083 ORTHO05D008801 1.4e-32 145.6 174 46.6
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 4.2e-32 144.1 225 38.7
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 2.1e-31 141.7 162 49.4
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 7.9e-31 139.8 162 48.8
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 1.3e-28 132.5 232 37.9
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 4.1e-27 127.5 219 40.6
ATR0598G052 Amborella trichopoda HOM05D007083 ORTHO05D008801 1.1e-24 119.4 171 37.4
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 1.2e-23 115.9 202 38.1
PSO339G4029 Papaver somniferum HOM05D007083 ORTHO05D008801 2.0e-21 108.6 163 39.3
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 3.7e-20 104.4 170 37.6
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 2.7e-15 88.2 63 60.3
Migut.N01212 Erythranthe guttata HOM05D007083 ORTHO05D008801 4.4e-13 80.9 220 35.0
TPR.G10240 Trifolium pratense HOM05D007083 ORTHO05D008801 1.4e-11 75.9 68 48.5
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 1.1e-08 66.2 167 29.9
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 3.2e-08 64.7 44 68.2
Atru.BG.59.p Acer truncatum HOM05D007083 ORTHO05D008801 1.2e-07 62.8 102 38.2
SalBow3G0197 Salvia bowleyana HOM05D007675 ORTHO05D009699 3.6e-07 61.2 177 28.8
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 1.8e-06 58.9 165 24.2
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 3.0e-06 58.2 163 25.2
Ciclev10014539m.g Citrus clementina HOM05D002890 ORTHO05D009847 5.2e-06 57.4 165 25.5
Haze_02434 Corylus avellana HOM05D007675 ORTHO05D009699 5.2e-06 57.4 229 26.6


User provided reference genes

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