Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004939 Carpinus fangiana HOM05D006662 ORTHO05D008378 9.8e-115 416.8 205 100.0
Haze_02471 Corylus avellana HOM05D006662 ORTHO05D008378 6.6e-103 377.5 228 85.1
CiPaw.05G058200 Carya illinoinensis HOM05D006662 ORTHO05D008378 6.0e-88 327.8 205 80.5
Thecc.02G093600 Theobroma cacao HOM05D006662 ORTHO05D008378 1.7e-82 309.7 209 76.1
Cpa.g.sc62.73 Carica papaya HOM05D006662 ORTHO05D008378 5.1e-79 298.1 211 73.0
CANSAT25G1076 Cannabis sativa HOM05D006662 ORTHO05D008378 1.5e-78 296.6 207 72.5
MD05G1073200 Malus domestica HOM05D006662 ORTHO05D008378 2.8e-77 292.4 212 71.7
Manes.17G095800 Manihot esculenta HOM05D006662 ORTHO05D008378 2.8e-77 292.4 210 71.0
Prupe.8G113800 Prunus persica HOM05D006662 ORTHO05D008378 4.8e-77 291.6 215 71.2
QL11p039030 Quercus lobata HOM05D006662 ORTHO05D008378 8.1e-77 290.8 214 72.0
Gohir.D12G026500 Gossypium hirsutum HOM05D006662 ORTHO05D008378 5.3e-76 288.1 207 70.5
QL11p040314 Quercus lobata HOM05D006662 ORTHO05D008378 5.3e-76 288.1 211 71.6
Gohir.A12G027000 Gossypium hirsutum HOM05D006662 ORTHO05D008378 2.0e-75 286.2 209 69.9
ClCG09G017640 Citrullus lanatus HOM05D006662 ORTHO05D008378 9.9e-75 283.9 208 70.7
PGR142G1799 Punica granatum HOM05D006662 ORTHO05D008378 2.2e-74 282.7 204 69.1
MD10G1087700 Malus domestica HOM05D006662 ORTHO05D008378 6.4e-74 281.2 212 70.3
Sed0006883 Sechium edule HOM05D006662 ORTHO05D008378 1.2e-72 276.9 207 67.1
TAR625G0716 Trochodendron aralioides HOM05D006662 ORTHO05D008378 2.1e-72 276.2 195 72.8
Gorai.008G026800 Gossypium raimondii HOM05D006662 ORTHO05D008378 3.5e-72 275.4 234 63.2
COL.COLO4_11735 Corchorus olitorius HOM05D006662 ORTHO05D008378 7.9e-72 274.2 203 69.0
Lalb_Chr05g0218931 Lupinus albus HOM05D006662 ORTHO05D008378 7.9e-72 274.2 204 68.1
Potri.009G108200 Populus trichocarpa HOM05D006662 ORTHO05D008378 7.9e-72 274.2 208 69.2
MELO3C021923.2 Cucumis melo HOM05D006662 ORTHO05D008378 1.8e-71 273.1 210 68.1
arahy.Tifrunner.gnm1.ann1.XIH6CG Arachis hypogaea HOM05D006662 ORTHO05D008378 2.3e-71 272.7 207 67.6
arahy.Tifrunner.gnm1.ann1.WYH7K2 Arachis hypogaea HOM05D006662 ORTHO05D008378 5.1e-71 271.6 207 67.1
Manes.15G144700 Manihot esculenta HOM05D006662 ORTHO05D008378 8.7e-71 270.8 202 68.8
Eucgr.I01209 Eucalyptus grandis HOM05D006662 ORTHO05D008378 1.5e-70 270.0 217 65.0
CsaV3_2G014240 Cucumis sativus L. HOM05D006662 ORTHO05D008378 4.3e-70 268.5 208 67.3
Hma1.2p1_0584F.1_g183200 Hydrangea macrophylla HOM05D006662 ORTHO05D008378 4.3e-70 268.5 210 68.6
RcHm_v2.0_Chr6g0259611 Rosa chinensis HOM05D006662 ORTHO05D008378 4.3e-70 268.5 207 68.1
Sed0017443 Sechium edule HOM05D006662 ORTHO05D008378 2.8e-69 265.8 205 67.3
FAN20G1592 Fragaria x ananassa HOM05D006662 ORTHO05D008378 1.4e-68 263.5 205 66.3
Lj4g0000402 Lotus japonicus HOM05D006662 ORTHO05D008378 3.1e-68 262.3 205 65.4
Nn6g32129 Nelumbo nucifera HOM05D006662 ORTHO05D008378 3.1e-68 262.3 205 66.8
Glyma.02G136700 Glycine max HOM05D006662 ORTHO05D008378 4.0e-68 261.9 206 65.0
FAN15G0063 Fragaria x ananassa HOM05D006662 ORTHO05D008378 5.3e-68 261.5 205 65.4
Lalb_Chr16g0384501 Lupinus albus HOM05D006662 ORTHO05D008378 5.3e-68 261.5 206 65.5
FvH4_2g07110 Fragaria vesca HOM05D006662 ORTHO05D008378 6.9e-68 261.2 205 65.9
TWI75G0095 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 4.5e-67 258.5 217 63.6
VMungo0251G2580 Vigna mungo HOM05D006662 ORTHO05D008378 5.8e-67 258.1 205 64.4
Sabra09G0082500 Salix brachista HOM05D006662 ORTHO05D008378 2.9e-66 255.8 201 67.7
Ca_18646_v3 Cicer arietinum L. HOM05D006662 ORTHO05D008378 8.4e-66 254.2 205 62.9
TAR381G0443 Trochodendron aralioides HOM05D006662 ORTHO05D008378 8.4e-66 254.2 205 66.8
MBI16_g19891_MAGBIO Magnolia biondii HOM05D006662 ORTHO05D008378 2.5e-65 252.7 179 69.8
GSVIVG01031844001 Vitis vinifera HOM05D006662 ORTHO05D008378 7.1e-65 251.1 207 67.1
TWI79G0535 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 1.2e-64 250.4 215 63.7
Ciclev10029278m.g Citrus clementina HOM05D006662 ORTHO05D008378 4.6e-64 248.4 211 64.0
PGSC0003DMG400025927 Solanum tuberosum HOM05D006662 ORTHO05D008378 4.6e-64 248.4 197 64.0
THA.LOC104807344 Tarenaya hassleriana HOM05D006662 ORTHO05D008378 4.6e-64 248.4 212 62.3
Nitab4.5_0001401g0110 Nicotiana tabacum HOM05D006662 ORTHO05D008378 6.0e-64 248.1 207 62.8
CSS0011742 Camellia sinensis var. sinensis HOM05D006662 ORTHO05D008378 1.0e-63 247.3 202 64.4
Duzib132G0812 Durio zibethinus HOM05D006662 ORTHO05D008378 2.3e-63 246.1 202 62.9
Lsat_1_v5_gn_7_87521 Lactuca sativa HOM05D006662 ORTHO05D008378 5.1e-63 245.0 181 66.9
Peaxi162Scf00016g01334 Petunia axillaris HOM05D006662 ORTHO05D008378 5.1e-63 245.0 203 63.1
HanXRQChr16g0505251 Helianthus annuus HOM05D006662 ORTHO05D008378 6.7e-63 244.6 176 67.0
Nitab4.5_0013034g0030 Nicotiana tabacum HOM05D006662 ORTHO05D008378 1.1e-62 243.8 207 61.8
Oeu034073.1 Olea europaea HOM05D006662 ORTHO05D008378 1.1e-62 243.8 180 66.1
Oeu034074.1 Olea europaea HOM05D006662 ORTHO05D008378 1.5e-62 243.4 182 66.5
Ah.01g019950 Amaranthus hybridus HOM05D006662 ORTHO05D008378 2.5e-62 242.7 208 61.1
Sopen01g051110 Solanum pennellii HOM05D006662 ORTHO05D008378 5.7e-62 241.5 197 62.9
Ciclev10029277m.g Citrus clementina HOM05D006662 ORTHO05D008378 7.4e-62 241.1 211 61.6
Atru.chr5.2838 Acer truncatum HOM05D006662 ORTHO05D008378 1.6e-61 240.0 227 60.4
Cc02_g18370 Coffea canephora HOM05D006662 ORTHO05D008378 2.8e-61 239.2 193 64.8
TPR.G23518 Trifolium pratense HOM05D006662 ORTHO05D008378 2.8e-61 239.2 194 62.4
Phvul.003G295900 Phaseolus vulgaris HOM05D006662 ORTHO05D008378 4.8e-61 238.4 205 60.5
Glyma.07G208750 Glycine max HOM05D006662 ORTHO05D000003 5.3e-60 235.0 194 63.9
MSTRG.16773 Avicennia marina HOM05D006662 ORTHO05D008378 9.0e-60 234.2 211 58.3
AUR62011410 Chenopodium quinoa HOM05D006662 ORTHO05D008378 9.0e-60 234.2 200 59.0
Sc18g0004870 Simmondsia chinensis HOM05D006662 ORTHO05D008378 9.0e-60 234.2 205 59.0
AUR62016649 Chenopodium quinoa HOM05D006662 ORTHO05D008378 1.5e-59 233.4 201 57.7
DCAR_022073 Daucus carota HOM05D006662 ORTHO05D008378 1.5e-59 233.4 177 65.0
Solyc01g108910.4 Solanum lycopersicum HOM05D006662 ORTHO05D008378 1.5e-59 233.4 197 61.4
MSTRG.20127 Avicennia marina HOM05D006662 ORTHO05D008378 5.9e-59 231.5 204 59.8
Psat7g120680 Pisum sativum HOM05D006662 ORTHO05D008378 5.0e-58 228.4 205 61.0
ECA236G2218 Erigeron canadensis HOM05D001803 ORTHO05D001686 2.5e-57 226.1 176 63.6
unitig_60.g25450 Utricularia gibba HOM05D006662 ORTHO05D008378 2.5e-57 226.1 183 61.2
ECA234G3259 Erigeron canadensis HOM05D006662 ORTHO05D008378 9.3e-57 224.2 204 55.9
Sp3g29170 Schrenkiella parvula HOM05D006662 ORTHO05D008378 7.9e-56 221.1 209 57.4
PSO541G1188 Papaver somniferum HOM05D006662 ORTHO05D008378 1.3e-55 220.3 210 56.7
CDE04G2620 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 2.3e-55 219.5 207 57.5
AL3G47680 Arabidopsis lyrata HOM05D006662 ORTHO05D008378 1.1e-54 217.2 207 58.9
CDE02G2985 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 1.9e-54 216.5 207 57.0
SGA_v2.0_scaffold32G13129 Striga asiatica HOM05D006662 ORTHO05D008378 3.3e-54 215.7 198 56.1
Carub.0003s2977 Capsella rubella HOM05D006662 ORTHO05D008378 4.3e-54 215.3 208 55.8
AT2G15890 Arabidopsis thaliana HOM05D006662 ORTHO05D008378 5.7e-54 214.9 207 56.5
PSO675G4443 Papaver somniferum HOM05D006662 ORTHO05D008378 5.7e-54 214.9 201 56.7
BcaC01g03048 Brassica carinata HOM05D006662 ORTHO05D008378 7.4e-54 214.5 206 58.7
C03p56690 Brassica napus HOM05D006662 ORTHO05D008378 7.4e-54 214.5 206 58.7
BolC3t17953H Brassica oleracea HOM05D006662 ORTHO05D008378 7.4e-54 214.5 206 58.7
CARHR106220 Cardamine hirsuta HOM05D006662 ORTHO05D008378 9.7e-54 214.2 212 57.1
Aa31LG8G13410 Aethionema arabicum HOM05D006662 ORTHO05D008378 1.3e-53 213.8 218 56.4
Thhalv10022827m.g Eutrema salsugineum HOM05D006662 ORTHO05D008378 1.3e-53 213.8 211 57.3
Oeu057667.1 Olea europaea HOM05D006662 ORTHO05D008378 1.3e-53 213.8 205 57.1
A03p45640 Brassica napus HOM05D006662 ORTHO05D008378 4.8e-53 211.8 206 57.8
BcaB08g34616 Brassica carinata HOM05D006662 ORTHO05D008378 1.8e-52 209.9 169 63.3
BraA03t13696Z Brassica rapa HOM05D006662 ORTHO05D008378 2.4e-52 209.5 206 57.3
EL10Ac9g21803 Beta vulgaris HOM05D006662 ORTHO05D008378 5.3e-52 208.4 204 56.9
Medtr4g087160 Medicago truncatula HOM05D006662 ORTHO05D008378 6.9e-52 208.0 167 61.1
Aqoxy6G00923 Aquilegia oxysepala HOM05D006662 ORTHO05D008378 1.7e-50 203.4 176 58.0
SalBow6G2487 Salvia bowleyana HOM05D006662 ORTHO05D008378 1.4e-49 200.3 229 49.8
ATR0733G082 Amborella trichopoda HOM05D006662 ORTHO05D008378 4.2e-49 198.7 181 58.6
Migut.B00297 Erythranthe guttata HOM05D006662 ORTHO05D008378 7.9e-48 194.5 146 61.6
Hund06197 Selenicereus undatus HOM05D006662 ORTHO05D008378 7.2e-41 171.4 228 45.6
Dinv23602 Davidia involucrata HOM05D000546 ORTHO05D000398 9.7e-38 161.0 120 72.5
SEGI_00093 Sequoiadendron giganteum HOM05D006662 ORTHO05D008378 1.6e-35 153.7 231 42.4
HPP92_017773 Vanilla planifolia HOM05D006662 ORTHO05D008378 5.9e-35 151.8 193 44.0
Zm00001eb058550 Zea mays HOM05D006662 ORTHO05D008378 3.8e-34 149.1 202 42.1
Lj9A364T65 Lonicera japonica HOM05D006662 ORTHO05D008378 8.5e-34 147.9 244 40.6
Actinidia00472 Actinidia chinensis HOM05D006662 ORTHO05D008378 1.5e-33 147.1 173 48.6
Zm00001eb214110 Zea mays HOM05D006662 ORTHO05D008378 2.1e-32 143.3 180 43.3
Duzib052G0855 Durio zibethinus HOM05D006662 ORTHO05D008378 1.8e-31 140.2 102 70.6
Pp3c25_14850 Physcomitrium patens HOM05D006662 ORTHO05D008378 3.1e-20 102.8 180 35.0
SMO351G0555 Selaginella moellendorffii HOM05D006662 ORTHO05D008378 3.1e-20 102.8 180 35.0
AagrBONN_evm.TU.Sc2ySwM_117.2125 Anthoceros agrestis HOM05D006662 ORTHO05D008378 2.7e-19 99.8 189 34.4
Peaxi162Scf00068g00075 Petunia axillaris HOM05D006662 ORTHO05D008378 3.5e-19 99.4 90 57.8
Cfa020839 Carpinus fangiana HOM05D006662 ORTHO05D008378 4.5e-19 99.0 49 93.9
HanXRQChr16g0505241 Helianthus annuus HOM05D000009 ORTHO05D000008 1.5e-17 94.0 103 52.4
Mapoly0184s0005 Marchantia polymorpha HOM05D006662 ORTHO05D008378 2.5e-17 93.2 198 31.3
Os03g0765500 Oryza sativa ssp. japonica HOM05D006662 ORTHO05D008378 7.5e-14 81.6 130 38.5
Rhsim11G0170000 Rhododendron simsii HOM05D006662 ORTHO05D008378 1.2e-11 74.3 105 38.1
Peaxi162Scf00140g10022 Petunia axillaris HOM05D006662 ORTHO05D008378 3.5e-11 72.8 102 42.2
MBI11_g11967_MAGBIO Magnolia biondii HOM05D006662 ORTHO05D008378 1.2e-06 57.8 55 54.5


User provided reference genes

Program Settings