Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 6.5e-263 910.2 473 100.0
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 6.2e-213 744.2 443 90.3
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 9.7e-174 614.0 445 74.8
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 3.1e-172 609.0 436 75.2
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 3.1e-172 609.0 436 75.2
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 1.9e-145 520.0 444 64.2
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 1.8e-143 513.5 443 63.0
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 2.7e-139 499.6 437 64.1
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 1.9e-137 493.4 420 63.8
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 5.5e-137 491.9 438 61.9
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 1.0e-135 487.6 438 62.6
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 1.4e-135 487.3 437 62.0
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 4.4e-134 482.3 441 60.8
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 9.8e-134 481.1 442 60.6
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 3.7e-133 479.2 414 60.6
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 8.3e-133 478.0 437 61.3
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 1.1e-132 477.6 438 61.2
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 3.1e-132 476.1 438 61.0
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 3.5e-131 472.6 442 60.4
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 1.7e-130 470.3 419 58.7
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 5.0e-130 468.8 445 58.2
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 8.6e-130 468.0 414 59.4
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 1.1e-129 467.6 444 57.9
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 1.2e-128 464.2 425 57.2
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 1.4e-127 460.7 414 59.4
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 1.4e-127 460.7 415 59.3
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 1.8e-127 460.3 436 58.5
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 4.0e-127 459.1 416 59.6
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 1.5e-126 457.2 447 56.6
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 1.5e-126 457.2 441 56.7
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 9.8e-126 454.5 439 56.5
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 2.9e-125 453.0 437 57.0
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 3.2e-124 449.5 413 58.4
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 4.1e-124 449.1 371 62.0
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 1.2e-123 447.6 440 57.5
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 5.6e-121 438.7 440 53.9
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 5.6e-121 438.7 449 55.0
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 9.5e-121 438.0 437 55.6
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 3.6e-120 436.0 425 55.3
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 6.8e-119 431.8 443 53.0
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 9.8e-118 427.9 436 55.0
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 1.3e-117 427.6 442 53.2
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 4.1e-116 422.5 405 57.0
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 5.4e-116 422.2 420 55.2
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 7.0e-116 421.8 436 54.8
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 7.0e-116 421.8 436 54.4
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 1.6e-115 420.6 411 56.2
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 2.1e-115 420.2 415 55.4
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 6.0e-115 418.7 429 55.5
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 7.8e-115 418.3 436 53.9
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 1.0e-114 417.9 407 56.0
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 1.3e-114 417.5 420 54.3
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 1.9e-113 413.7 436 52.5
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 2.5e-113 413.3 437 53.8
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 3.3e-113 412.9 444 53.4
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 5.6e-113 412.1 391 56.3
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 3.6e-112 409.5 432 52.5
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 1.8e-111 407.1 428 53.0
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 6.8e-111 405.2 413 51.6
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.6e-110 403.3 448 49.6
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 5.8e-110 402.1 353 61.2
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 1.3e-109 401.0 470 50.4
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.7e-109 400.6 443 51.7
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 2.2e-109 400.2 423 51.3
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 2.9e-109 399.8 443 51.9
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 6.0e-107 392.1 443 50.8
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 6.0e-107 392.1 442 50.7
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 6.0e-107 392.1 407 52.3
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 3.0e-106 389.8 357 61.1
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 3.0e-106 389.8 439 48.3
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 3.0e-106 389.8 481 47.4
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 6.6e-106 388.7 436 52.1
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 8.6e-106 388.3 438 50.0
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.1e-105 387.9 438 50.2
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 7.3e-105 385.2 416 50.0
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 2.1e-104 383.6 438 50.2
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 2.4e-103 380.2 386 52.1
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 8.9e-103 378.3 436 48.9
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 6.0e-99 365.5 351 62.1
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 1.0e-98 364.8 301 61.1
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 1.7e-98 364.0 424 48.8
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 8.7e-98 361.7 435 48.3
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 1.1e-97 361.3 445 46.3
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 1.2e-96 357.8 451 47.7
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 1.5e-94 350.9 425 48.0
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 7.1e-92 342.0 437 46.2
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 5.6e-89 332.4 349 56.7
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 2.4e-87 327.0 389 48.1
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 3.4e-86 323.2 340 57.9
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 6.2e-80 302.4 297 55.9
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 5.5e-76 289.3 420 41.0
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 4.6e-75 286.2 427 38.9
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 7.9e-75 285.4 438 42.7
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 1.1e-68 265.0 432 40.3
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 4.3e-65 253.1 238 56.3
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 5.7e-65 252.7 386 37.8
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 6.3e-64 249.2 370 41.9
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 7.2e-60 235.7 395 36.2
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 2.6e-54 217.2 217 52.1
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 1.4e-47 194.9 201 48.3
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 6.5e-45 186.0 214 50.5
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 3.1e-31 140.6 214 41.6
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 1.2e-25 122.1 83 68.7
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.1e-23 114.0 121 49.6
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 1.2e-19 102.1 266 30.8
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.3e-16 92.0 70 57.1
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 1.2e-14 85.5 114 50.0
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.5e-14 84.0 70 55.7
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 5.9e-14 83.2 55 63.6
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 1.2e-09 68.9 101 46.5
MELO3C029443.2 Cucumis melo HOM05D006834 ORTHO05D008623 7.0e-07 59.7 40 67.5
SEGI_05800 Sequoiadendron giganteum HOM05D001726 ORTHO05D001761 3.5e-06 57.4 153 26.8


User provided reference genes

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