Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004764 Carpinus fangiana HOM05D007502 ORTHO05D010230 1.8e-91 339.3 189 100.0
Haze_10361 Corylus avellana HOM05D007502 ORTHO05D010230 9.5e-72 273.9 191 86.4
CiPaw.01G003100 Carya illinoinensis HOM05D007502 ORTHO05D010230 6.6e-41 171.4 183 61.2
Haze_15266 Corylus avellana HOM05D064528 ORTHO05D043735 9.0e-38 161.0 204 51.5
QL06p039372 Quercus lobata HOM05D007502 ORTHO05D010230 2.2e-36 156.4 172 61.0
Cfa004146 Carpinus fangiana HOM05D064528 ORTHO05D043735 1.0e-33 147.5 196 52.0
CSS0024819 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 1.4e-30 137.1 186 48.9
Prupe.6G218900 Prunus persica HOM05D007502 ORTHO05D010230 2.9e-28 129.4 167 56.9
Ciclev10027603m.g Citrus clementina HOM05D007502 ORTHO05D010230 4.6e-26 122.1 176 52.3
RhsimUnG0241800 Rhododendron simsii HOM05D007502 ORTHO05D010230 1.3e-25 120.6 149 50.3
vmacro05426 Vaccinium macrocarpon HOM05D007502 ORTHO05D010230 8.7e-25 117.9 165 46.7
MD15G1299000 Malus domestica HOM05D007502 ORTHO05D010230 1.1e-24 117.5 166 50.0
Potri.007G006000 Populus trichocarpa HOM05D007502 ORTHO05D010230 1.5e-24 117.1 200 44.0
Gorai.007G225000 Gossypium raimondii HOM05D007502 ORTHO05D010230 3.7e-23 112.5 186 49.5
Gohir.D11G209800 Gossypium hirsutum HOM05D007502 ORTHO05D010230 1.4e-22 110.5 185 47.6
Gohir.A11G213400 Gossypium hirsutum HOM05D007502 ORTHO05D010230 5.3e-22 108.6 185 47.0
TAR628G1349 Trochodendron aralioides HOM05D007502 ORTHO05D010230 1.5e-21 107.1 176 52.3
Dinv26948 Davidia involucrata HOM05D001896 ORTHO05D001862 2.0e-21 106.7 160 46.2
GSVIVG01002329001 Vitis vinifera HOM05D007502 ORTHO05D010230 3.4e-21 105.9 176 46.6
Thecc.01G074400 Theobroma cacao HOM05D007502 ORTHO05D010230 5.8e-21 105.1 182 47.8
Medtr5g015230 Medicago truncatula HOM05D007502 ORTHO05D010230 7.6e-21 104.8 179 41.3
Cc07_g07260 Coffea canephora HOM05D007502 ORTHO05D010230 9.9e-21 104.4 166 45.8
Lalb_Chr05g0213781 Lupinus albus HOM05D007502 ORTHO05D010230 9.9e-21 104.4 176 41.5
RcHm_v2.0_Chr2g0108411 Rosa chinensis HOM05D007502 ORTHO05D010230 9.9e-21 104.4 164 47.6
Eucgr.I00691 Eucalyptus grandis HOM05D007502 ORTHO05D010230 1.7e-20 103.6 183 50.3
Nitab4.5_0000142g0280 Nicotiana tabacum HOM05D007502 ORTHO05D010230 2.2e-20 103.2 192 43.8
Cpa.g.c26343.2 Carica papaya HOM05D007502 ORTHO05D010230 4.9e-20 102.1 187 42.8
Duzib187G0517 Durio zibethinus HOM05D007502 ORTHO05D010230 3.2e-19 99.4 197 43.7
COL.COLO4_11595 Corchorus olitorius HOM05D007502 ORTHO05D010230 2.7e-18 96.3 184 44.6
Actinidia11971 Actinidia chinensis HOM05D007502 ORTHO05D010230 3.5e-18 95.9 133 49.6
Solyc02g092200.3 Solanum lycopersicum HOM05D007502 ORTHO05D010230 3.5e-18 95.9 166 51.2
MSTRG.3478 Avicennia marina HOM05D007502 ORTHO05D010230 1.0e-17 94.4 145 45.5
CSS0004026 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 3.9e-17 92.4 143 47.6
Glyma.11G046600 Glycine max HOM05D007502 ORTHO05D010230 1.5e-16 90.5 170 41.2
Sabra07G0004300 Salix brachista HOM05D007502 ORTHO05D010230 1.5e-16 90.5 201 37.8
Dinv23033 Davidia involucrata HOM05D001896 ORTHO05D001862 7.4e-16 88.2 153 44.4
Peaxi162Scf00548g00223 Petunia axillaris HOM05D007502 ORTHO05D010230 7.4e-16 88.2 129 47.3
Phvul.002G009800 Phaseolus vulgaris HOM05D007502 ORTHO05D010230 1.3e-15 87.4 179 38.0
Sopen02g036770 Solanum pennellii HOM05D007502 ORTHO05D010230 1.3e-15 87.4 172 48.8
Lj2g0008607 Lotus japonicus HOM05D007502 ORTHO05D010230 1.8e-14 83.6 197 35.0
VMungo1215G1334 Vigna mungo HOM05D007502 ORTHO05D010230 2.4e-14 83.2 204 36.3
PGSC0003DMG401021412 Solanum tuberosum HOM05D007502 ORTHO05D010230 4.0e-14 82.4 158 45.6
DCAR_025816 Daucus carota HOM05D007502 ORTHO05D010230 5.3e-14 82.0 165 38.2
CANSAT01G3167 Cannabis sativa HOM05D007502 ORTHO05D010230 9.0e-14 81.3 187 39.6
Psat2g171920 Pisum sativum HOM05D007502 ORTHO05D010230 1.2e-13 80.9 133 39.8
arahy.Tifrunner.gnm1.ann1.69I0H7 Arachis hypogaea HOM05D007502 ORTHO05D010230 4.5e-13 79.0 171 37.4
arahy.Tifrunner.gnm1.ann1.W7GVX2 Arachis hypogaea HOM05D007502 ORTHO05D010230 7.6e-13 78.2 173 41.6
Ca_24677_v3 Cicer arietinum L. HOM05D007502 ORTHO05D010230 1.3e-12 77.4 142 37.3
FAN23G3114 Fragaria x ananassa HOM05D007502 ORTHO05D010230 4.9e-12 75.5 131 45.0
CARHR279950 Cardamine hirsuta HOM05D007502 ORTHO05D010230 4.2e-11 72.4 171 38.6
C03p59700 Brassica napus HOM05D007502 ORTHO05D011692 7.1e-11 71.6 176 33.5
BolC3t18232H Brassica oleracea HOM05D007502 ORTHO05D011692 7.1e-11 71.6 176 33.5
Glyma.01G195100 Glycine max HOM05D007502 ORTHO05D010230 2.1e-10 70.1 107 41.1
AT5G67640 Arabidopsis thaliana HOM05D007502 ORTHO05D010230 2.7e-10 69.7 206 38.8
Lsat_1_v5_gn_2_82580 Lactuca sativa HOM05D007502 ORTHO05D010230 1.0e-09 67.8 179 34.1
A06p32780 Brassica napus HOM05D007502 ORTHO05D011692 1.3e-09 67.4 177 39.0
BcaB02g09909 Brassica carinata HOM05D007502 ORTHO05D010230 3.9e-09 65.9 180 35.6
Nitab4.5_0003129g0050 Nicotiana tabacum HOM05D007502 ORTHO05D010230 3.9e-09 65.9 77 57.1
SalBow5G4540 Salvia bowleyana HOM05D007502 ORTHO05D010230 3.9e-09 65.9 127 43.3
BraA06t26210Z Brassica rapa HOM05D007502 ORTHO05D011692 6.7e-09 65.1 179 33.0
ECA238G4396 Erigeron canadensis HOM05D007502 ORTHO05D010230 6.7e-09 65.1 172 33.7
FAN19G2042 Fragaria x ananassa HOM05D000058 ORTHO05D000255 1.5e-08 63.9 75 56.0
Actinidia36426 Actinidia chinensis HOM05D001896 ORTHO05D001862 2.5e-08 63.2 76 53.9
FvH4_1g17950 Fragaria vesca HOM05D007502 ORTHO05D010230 9.7e-08 61.2 164 36.0
TPR.G9337 Trifolium pratense HOM05D007502 ORTHO05D010230 1.3e-07 60.8 121 36.4
Thhalv10005075m.g Eutrema salsugineum HOM05D007502 ORTHO05D010230 1.6e-07 60.5 111 36.0
Carub.0008s2683 Capsella rubella HOM05D007502 ORTHO05D010230 2.2e-07 60.1 201 35.3
Lsat_1_v5_gn_5_174300 Lactuca sativa HOM05D007502 ORTHO05D010230 4.8e-07 58.9 115 40.9
Sc03g0002470 Simmondsia chinensis HOM05D007502 ORTHO05D010230 4.8e-07 58.9 79 48.1
HanXRQChr01g0002171 Helianthus annuus HOM05D007502 ORTHO05D010230 1.1e-06 57.8 146 36.3
Aqoxy6G02556 Aquilegia oxysepala HOM05D007502 ORTHO05D010230 1.8e-06 57.0 92 46.7
ATR0739G061 Amborella trichopoda HOM05D007502 ORTHO05D010230 2.4e-06 56.6 101 45.5
AL8G43660 Arabidopsis lyrata HOM05D007502 ORTHO05D010230 3.1e-06 56.2 151 37.1


User provided reference genes

Program Settings