Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 0.0e+00 1364.7 728 100.0
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 0.0e+00 1223.0 729 91.5
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 0.0e+00 1079.3 658 91.2
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 1.6e-236 823.2 740 66.8
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 6.8e-235 817.8 758 67.5
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.2e-167 594.3 738 53.7
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.3e-156 557.8 767 50.6
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 8.2e-156 555.1 744 51.3
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.2e-154 551.2 758 50.7
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.2e-154 551.2 758 50.7
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 1.8e-150 537.3 735 50.1
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 1.1e-149 534.6 703 53.2
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 9.7e-149 531.6 792 48.2
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 2.4e-147 526.9 740 50.1
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.3e-142 510.4 746 49.6
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 3.0e-142 510.0 753 48.1
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 2.8e-140 503.4 734 49.3
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.1e-139 501.5 793 45.6
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 5.3e-139 499.2 750 48.4
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 7.7e-138 495.4 690 51.6
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 2.5e-136 490.3 748 48.3
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 2.3e-134 483.8 716 49.6
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 4.8e-132 476.1 765 46.4
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 9.1e-131 471.9 748 47.3
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.2e-130 471.5 753 44.9
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 1.2e-130 471.5 539 56.2
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 5.0e-129 466.1 740 45.8
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 2.8e-127 460.3 758 44.9
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 8.0e-127 458.8 731 45.4
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 6.3e-124 449.1 600 49.8
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 4.3e-120 436.4 772 42.1
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.6e-117 427.2 759 44.0
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 6.0e-114 416.0 760 43.2
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 3.3e-112 410.2 787 41.6
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 6.2e-111 406.0 746 43.2
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 5.2e-110 402.9 735 41.4
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 8.9e-110 402.1 849 40.4
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 1.2e-109 401.7 822 38.6
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 2.9e-108 397.1 745 41.9
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 4.9e-108 396.4 514 52.5
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 4.9e-108 396.4 752 41.8
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 2.0e-106 391.0 824 37.7
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 2.0e-106 391.0 788 40.0
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.7e-106 390.6 738 41.6
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 4.6e-106 389.8 745 42.4
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 7.8e-106 389.0 725 42.5
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 1.1e-104 385.2 731 40.6
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 3.6e-103 380.2 831 37.4
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 6.2e-103 379.4 731 40.9
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 1.8e-102 377.9 743 41.6
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 3.4e-101 373.6 629 42.1
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 9.2e-99 365.5 770 38.2
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 7.8e-98 362.5 743 38.0
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 3.0e-97 360.5 664 43.7
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.1e-96 358.6 739 39.2
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 7.3e-96 355.9 617 44.6
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 1.6e-95 354.8 736 39.1
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 4.7e-95 353.2 631 42.0
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 6.2e-95 352.8 684 42.3
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 3.1e-94 350.5 728 40.1
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 5.8e-93 346.3 769 37.1
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 2.9e-92 344.0 734 38.4
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.4e-91 341.7 763 37.0
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 3.2e-91 340.5 743 37.7
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 3.5e-90 337.0 765 36.6
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 8.7e-89 332.4 762 38.3
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 1.6e-87 328.2 740 38.6
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 3.6e-87 327.0 754 39.4
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.8e-86 324.7 756 38.4
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 1.1e-83 315.5 602 41.9
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 7.1e-83 312.8 746 37.8
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 3.3e-80 303.9 694 39.0
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 5.6e-80 303.1 666 40.1
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 5.6e-80 303.1 638 39.0
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 1.6e-79 301.6 555 41.1
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.1e-79 301.2 683 40.1
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 9.0e-78 295.8 755 37.2
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 2.9e-76 290.8 743 36.1
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 6.4e-76 289.7 810 34.2
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 3.9e-73 280.4 742 34.9
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 7.4e-72 276.2 751 33.2
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 6.2e-71 273.1 652 36.2
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 2.4e-70 271.2 736 34.2
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 1.2e-69 268.9 853 31.8
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 1.3e-68 265.4 518 41.3
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.7e-68 265.0 771 33.9
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 3.2e-67 260.8 791 33.8
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 5.5e-67 260.0 718 35.1
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 1.6e-66 258.5 762 33.3
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 1.8e-65 255.0 766 33.9
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 1.1e-64 252.3 766 34.5
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 2.5e-64 251.1 567 37.9
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 4.3e-64 250.4 587 37.5
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.1e-63 248.1 748 33.3
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.1e-63 248.1 232 59.9
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 6.2e-63 246.5 645 34.7
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 1.1e-62 245.7 576 38.9
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 1.4e-62 245.4 575 38.1
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 1.4e-62 245.4 575 38.1
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 5.3e-62 243.4 738 34.0
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 5.3e-62 243.4 241 56.0
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 5.3e-62 243.4 200 66.5
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 9.0e-62 242.7 742 33.0
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 3.5e-58 230.7 568 38.0
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 4.6e-58 230.3 379 43.5
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 8.7e-57 226.1 769 32.1
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 2.5e-56 224.6 403 46.7
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.4e-54 218.8 287 46.3
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 5.9e-53 213.4 507 37.5
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 7.9e-50 203.0 745 31.5
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 2.5e-43 181.4 499 34.7
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.1e-42 178.3 417 37.4
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 7.9e-42 176.4 390 39.0
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 3.3e-40 171.0 752 29.9
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 4.8e-39 167.2 715 30.3
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 4.2e-35 154.1 89 79.8
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 3.6e-34 151.0 494 33.6
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 9.7e-32 142.9 555 31.4
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 2.6e-29 134.8 561 28.5
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 5.9e-29 133.7 636 28.0
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 4.0e-25 120.9 143 53.8
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 1.5e-24 119.0 116 61.2
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 2.7e-21 108.2 75 66.7
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 5.0e-20 104.0 142 45.1
Prupe.8G157000 Prunus persica HOM05D004882 ORTHO05D005551 7.2e-19 100.1 183 43.2
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 4.7e-18 97.4 54 77.8
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.5e-16 92.4 175 44.6
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 4.1e-14 84.3 84 50.0
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 7.2e-11 73.6 55 69.1
vmacro01916 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 2.8e-10 71.6 160 39.4
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 4.7e-10 70.9 109 46.8
Zm00001eb090710 Zea mays HOM05D004882 ORTHO05D005551 1.0e-09 69.7 221 29.0
SHI04903 Sapria himalayana HOM05D004882 ORTHO05D005551 7.5e-08 63.5 50 62.0
vmacro05756 Vaccinium macrocarpon HOM05D060962 ORTHO05D005551 7.5e-08 63.5 45 60.0
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 2.8e-07 61.6 42 66.7
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 2.8e-07 61.6 46 58.7
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 3.7e-07 61.2 46 56.5
Nn5g30227 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.1e-06 58.2 46 63.0
Nn8g41058 Nelumbo nucifera HOM05D004882 ORTHO05D005551 5.4e-06 57.4 47 55.3


User provided reference genes

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