Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.7e-163 579.3 296 100.0
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 7.5e-140 500.7 301 87.7
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 1.6e-121 439.9 291 80.1
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 4.6e-121 438.3 237 94.1
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 1.2e-118 430.3 289 77.5
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 2.3e-117 426.0 286 77.3
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.7e-115 419.9 280 76.8
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 6.4e-115 417.9 291 74.6
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 4.6e-113 411.8 284 75.4
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 1.7e-112 409.8 295 74.9
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 5.6e-111 404.8 354 65.3
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 8.9e-109 397.5 279 74.2
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 1.2e-108 397.1 292 73.6
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 2.0e-108 396.4 290 71.7
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 4.9e-107 391.7 289 70.2
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 3.2e-106 389.0 280 71.4
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.6e-105 386.7 285 70.2
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 3.5e-105 385.6 287 71.1
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 4.6e-105 385.2 307 66.8
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 6.0e-105 384.8 291 70.8
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 2.3e-104 382.9 289 68.9
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 2.5e-103 379.4 312 65.7
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 7.3e-103 377.9 284 68.3
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.6e-102 376.7 298 67.8
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 1.6e-102 376.7 291 67.7
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 6.2e-102 374.8 294 67.7
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 8.1e-102 374.4 291 69.1
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 1.4e-101 373.6 236 78.0
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 5.2e-101 371.7 290 69.0
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 6.8e-101 371.3 284 71.1
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 6.8e-101 371.3 292 64.4
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 3.4e-100 369.0 230 77.4
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 7.6e-100 367.9 292 65.1
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 7.6e-100 367.9 282 68.1
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 7.6e-100 367.9 274 67.5
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.7e-99 366.7 278 68.0
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 1.7e-99 366.7 290 67.9
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 2.2e-99 366.3 256 72.7
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 2.9e-99 365.9 287 64.8
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 6.4e-99 364.8 276 66.7
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 8.4e-99 364.4 288 67.4
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 4.1e-98 362.1 299 66.2
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 7.1e-98 361.3 283 66.8
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 9.2e-98 360.9 283 65.4
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 2.1e-97 359.8 267 67.0
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 2.1e-97 359.8 283 67.8
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 6.0e-97 358.2 300 60.7
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 7.8e-97 357.8 289 66.1
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 2.3e-96 356.3 232 74.6
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 3.0e-96 355.9 232 74.1
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 5.1e-96 355.1 285 66.7
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 5.1e-96 355.1 289 65.4
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 6.6e-96 354.8 293 65.9
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 1.1e-95 354.0 251 69.7
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.5e-95 352.8 250 72.8
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 2.5e-95 352.8 312 61.5
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.2e-94 350.5 279 66.3
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.1e-93 347.4 294 62.6
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 1.4e-93 347.1 229 74.2
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 1.4e-93 347.1 258 67.4
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.4e-93 347.1 293 63.1
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.4e-93 347.1 293 63.1
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 3.1e-93 345.9 317 60.9
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 8.9e-93 344.4 295 62.4
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 1.2e-92 344.0 257 67.7
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 2.6e-92 342.8 273 65.6
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 5.8e-92 341.7 289 62.3
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 2.9e-91 339.3 288 62.2
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 4.9e-91 338.6 293 61.4
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 3.2e-90 335.9 233 70.0
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 3.2e-90 335.9 231 69.7
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 9.3e-90 334.3 231 68.8
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 2.7e-89 332.8 283 61.5
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 2.7e-89 332.8 289 61.9
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 6.0e-89 331.6 305 58.7
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 2.3e-88 329.7 203 79.8
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 1.5e-87 327.0 268 63.1
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 1.9e-87 326.6 261 66.3
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 7.3e-87 324.7 306 58.2
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 2.8e-86 322.8 306 57.8
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 3.6e-86 322.4 271 61.6
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 1.2e-84 317.4 230 66.5
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 7.6e-84 314.7 216 70.8
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 2.9e-83 312.8 217 72.4
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 7.9e-81 304.7 239 66.5
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 2.3e-80 303.1 284 54.6
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 6.7e-80 301.6 206 70.4
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 6.7e-80 301.6 268 62.3
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 2.1e-78 296.6 205 71.7
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 6.2e-78 295.0 205 71.7
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 7.9e-73 278.1 183 70.5
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 1.3e-70 270.8 219 67.1
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 5.8e-68 261.9 227 55.9
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 7.6e-68 261.5 202 65.8
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 3.8e-67 259.2 295 50.5
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 6.3e-62 241.9 232 51.3
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 2.4e-61 240.0 168 72.0
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 3.1e-61 239.6 267 48.3
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 2.5e-58 229.9 207 59.9
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 2.5e-58 229.9 235 51.5
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 6.1e-57 225.3 285 47.4
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 2.5e-55 219.9 236 50.0
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.4e-48 197.6 123 77.2
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 1.7e-43 180.6 141 69.5
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 2.8e-38 163.3 116 70.7
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 1.4e-32 144.4 183 44.3
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 5.0e-27 125.9 102 63.7
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 9.4e-26 121.7 100 62.0
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 4.8e-22 109.4 343 29.2
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 1.3e-19 101.3 203 36.0
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 1.4e-16 91.3 250 32.8
Haze_10306 Corylus avellana HOM05D000031 ORTHO05D001033 4.4e-15 86.3 51 88.2
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.3e-14 84.7 102 50.0
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 8.6e-11 72.0 51 72.5
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 9.5e-10 68.6 79 51.9
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 4.0e-08 63.2 46 56.5
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 1.2e-07 61.6 62 48.4
Ca_28940_v3 Cicer arietinum L. HOM05D001568 ORTHO05D148655 1.2e-07 61.6 226 23.5
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 2.6e-07 60.5 62 46.8
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 2.6e-07 60.5 62 46.8
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 7.5e-07 58.9 53 52.8


User provided reference genes

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