Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.1e-179 633.3 324 100.0
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 3.8e-121 438.7 237 94.1
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 4.2e-120 435.3 272 83.8
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 3.7e-108 395.6 264 78.8
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 9.1e-107 391.0 229 84.7
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 2.9e-105 386.0 257 77.0
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 1.5e-104 383.6 318 65.7
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 2.5e-104 382.9 234 81.2
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 4.7e-103 378.6 265 73.2
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 1.4e-102 377.1 234 81.6
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.4e-102 377.1 229 82.1
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 4.0e-102 375.6 235 79.6
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 5.2e-102 375.2 234 78.2
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 6.8e-102 374.8 254 74.0
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 6.8e-102 374.8 245 76.7
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 4.4e-101 372.1 236 78.8
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 7.5e-101 371.3 228 81.6
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 1.3e-100 370.5 265 72.1
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 1.3e-100 370.5 234 77.4
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 4.8e-100 368.6 230 78.3
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 6.3e-100 368.2 292 64.7
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 1.6e-98 363.6 228 77.6
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 2.7e-98 362.8 248 74.2
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 2.7e-98 362.8 258 71.3
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 5.9e-98 361.7 253 71.5
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 1.0e-97 360.9 232 75.9
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 1.3e-97 360.5 263 70.7
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 2.3e-97 359.8 234 75.6
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 1.5e-96 357.1 259 69.9
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 1.5e-96 357.1 235 74.5
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 1.5e-96 357.1 258 69.0
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 1.2e-95 354.0 254 70.9
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 2.1e-95 353.2 234 74.4
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 4.7e-95 352.1 263 68.8
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 4.7e-95 352.1 255 68.6
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 6.1e-95 351.7 230 74.8
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 8.0e-95 351.3 230 74.3
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.8e-94 350.1 237 72.2
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 2.3e-94 349.7 264 68.6
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 5.2e-94 348.6 234 73.9
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 5.2e-94 348.6 248 71.4
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 5.2e-94 348.6 255 68.2
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 6.8e-94 348.2 270 66.3
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 6.8e-94 348.2 226 73.5
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 8.9e-94 347.8 263 66.2
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 1.2e-93 347.4 227 73.1
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.5e-93 347.1 263 67.7
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.5e-93 347.1 263 66.2
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 3.4e-93 345.9 255 70.2
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 5.7e-93 345.1 228 72.8
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 1.3e-92 344.0 234 73.5
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 1.7e-92 343.6 230 72.2
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.7e-92 343.6 230 72.6
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.7e-92 343.6 230 72.6
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 1.7e-92 343.6 260 69.2
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 3.7e-92 342.4 278 64.4
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 6.3e-92 341.7 224 75.9
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 8.3e-92 341.3 229 72.1
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 8.3e-92 341.3 230 71.7
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 1.4e-91 340.5 261 67.4
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 1.4e-91 340.5 240 71.7
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 1.8e-91 340.1 230 70.9
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 7.0e-91 338.2 228 71.9
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 7.0e-91 338.2 254 66.9
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 1.2e-90 337.4 232 71.6
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 1.6e-90 337.0 260 67.3
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.6e-90 337.0 235 70.6
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 2.0e-90 336.7 231 70.6
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 2.0e-90 336.7 231 72.7
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 3.5e-90 335.9 232 70.7
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 4.5e-90 335.5 230 70.4
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 1.7e-89 333.6 260 65.0
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 2.5e-88 329.7 231 69.7
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 3.3e-88 329.3 224 71.9
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 5.6e-88 328.6 231 69.7
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 5.6e-88 328.6 203 80.3
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 7.3e-88 328.2 261 65.1
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 2.1e-87 326.6 231 69.3
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 4.7e-87 325.5 233 69.1
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 1.8e-86 323.6 227 70.9
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 4.4e-85 318.9 216 72.2
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 6.4e-84 315.1 217 72.8
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 7.0e-83 311.6 229 65.9
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 3.9e-81 305.8 259 62.2
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 3.3e-80 302.8 229 62.0
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 4.3e-80 302.4 206 70.9
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 6.2e-79 298.5 267 62.9
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 1.8e-78 297.0 205 71.7
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 4.0e-78 295.8 205 72.2
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 4.6e-74 282.3 209 67.9
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 2.3e-73 280.0 183 71.6
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 1.6e-71 273.9 219 67.6
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 4.1e-67 259.2 226 55.3
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 3.3e-64 249.6 168 73.8
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 6.2e-63 245.4 169 71.0
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 5.2e-62 242.3 230 50.9
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 4.2e-59 232.6 227 50.2
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 1.7e-57 227.3 234 50.4
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 1.9e-56 223.8 231 51.1
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 9.6e-56 221.5 235 49.4
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.1e-54 218.0 131 77.9
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 3.9e-49 199.5 123 79.7
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 1.9e-48 197.2 233 48.1
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 2.0e-45 187.2 141 71.6
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.4e-38 164.5 116 70.7
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 2.3e-33 147.1 183 44.8
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 1.4e-27 127.9 100 64.0
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 1.9e-27 127.5 102 64.7
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 2.4e-22 110.5 340 29.1
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 1.0e-20 105.1 203 36.9
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 3.0e-17 93.6 255 32.5
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 2.8e-15 87.0 102 51.0
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 9.4e-11 72.0 51 72.5
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 5.1e-09 66.2 34 85.3
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 9.7e-08 62.0 46 58.7
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 1.3e-07 61.6 62 48.4
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 2.2e-07 60.8 62 46.8
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 2.2e-07 60.8 62 46.8
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 6.3e-07 59.3 53 52.8


User provided reference genes

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