Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004698 Carpinus fangiana HOM05D003497 ORTHO05D003964 1.9e-98 362.5 174 100.0
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 4.6e-65 251.5 161 82.0
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 3.0e-64 248.8 158 82.9
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 5.2e-24 115.2 297 34.0
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 2.7e-20 102.8 294 31.6
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.7e-19 100.1 85 56.5
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 1.7e-19 100.1 151 41.1
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 3.8e-19 99.0 85 61.2
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 8.6e-19 97.8 85 51.8
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 7.3e-18 94.7 85 57.6
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 9.5e-18 94.4 85 52.9
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.2e-17 94.0 85 51.8
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.6e-17 93.6 85 52.9
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 2.8e-17 92.8 139 41.0
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 3.6e-17 92.4 88 53.4
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 3.6e-17 92.4 85 54.1
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 3.6e-17 92.4 86 50.0
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 6.1e-17 91.7 85 56.5
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 8.0e-17 91.3 121 44.6
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 8.0e-17 91.3 121 44.6
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 8.0e-17 91.3 121 44.6
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 8.0e-17 91.3 121 44.6
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 8.0e-17 91.3 85 52.9
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 8.0e-17 91.3 88 53.4
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.0e-16 90.9 85 51.8
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 1.4e-16 90.5 86 52.3
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 1.4e-16 90.5 85 56.5
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 1.4e-16 90.5 129 41.1
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 2.3e-16 89.7 85 54.1
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 2.3e-16 89.7 86 52.3
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 3.0e-16 89.4 86 48.8
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 3.0e-16 89.4 121 43.8
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 3.0e-16 89.4 129 41.1
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 4.0e-16 89.0 123 43.1
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 4.0e-16 89.0 85 49.4
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 5.2e-16 88.6 82 52.4
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 1.2e-15 87.4 85 49.4
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.2e-15 87.4 109 42.2
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.2e-15 87.4 86 50.0
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 1.5e-15 87.0 85 49.4
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 1.5e-15 87.0 85 52.9
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 2.0e-15 86.7 85 49.4
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 2.0e-15 86.7 85 51.8
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.6e-15 86.3 86 47.7
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 3.4e-15 85.9 86 51.2
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 3.4e-15 85.9 85 51.8
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 3.4e-15 85.9 164 32.9
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 4.4e-15 85.5 88 50.0
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 4.4e-15 85.5 85 50.6
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 4.4e-15 85.5 85 50.6
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 4.4e-15 85.5 87 49.4
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 5.8e-15 85.1 85 50.6
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 5.8e-15 85.1 85 48.2
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 7.5e-15 84.7 87 48.3
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 9.8e-15 84.3 85 52.9
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 1.7e-14 83.6 103 42.7
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.7e-14 83.6 85 50.6
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.7e-14 83.6 85 50.6
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.7e-14 83.6 86 48.8
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 2.2e-14 83.2 85 50.6
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.2e-14 83.2 88 47.7
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 2.2e-14 83.2 85 49.4
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.2e-14 83.2 85 51.8
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 2.2e-14 83.2 142 38.0
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 2.9e-14 82.8 85 44.7
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 2.9e-14 82.8 90 46.7
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 3.7e-14 82.4 82 51.2
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.9e-14 82.0 85 49.4
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.9e-14 82.0 152 36.8
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 4.9e-14 82.0 87 54.0
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 6.4e-14 81.6 84 52.4
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 8.3e-14 81.3 85 48.2
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 8.3e-14 81.3 85 48.2
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 8.3e-14 81.3 87 52.9
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 8.3e-14 81.3 85 49.4
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 8.3e-14 81.3 85 48.2
Actinidia02442 Actinidia chinensis HOM05D003497 ORTHO05D003964 1.1e-13 80.9 70 55.7
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 1.1e-13 80.9 148 38.5
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.1e-13 80.9 86 46.5
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 1.1e-13 80.9 85 45.9
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 1.1e-13 80.9 85 49.4
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 1.1e-13 80.9 85 49.4
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 1.1e-13 80.9 85 48.2
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 1.4e-13 80.5 85 52.9
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.8e-13 80.1 88 46.6
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 1.8e-13 80.1 102 45.1
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 1.8e-13 80.1 97 44.3
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.4e-13 79.7 86 47.7
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 2.4e-13 79.7 65 56.9
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.4e-13 79.7 127 40.2
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 2.4e-13 79.7 152 36.2
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 2.4e-13 79.7 85 52.9
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 3.2e-13 79.3 85 48.2
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 3.2e-13 79.3 85 45.9
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 4.1e-13 79.0 76 53.9
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 4.1e-13 79.0 111 39.6
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.1e-13 79.0 146 37.0
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 4.1e-13 79.0 110 43.6
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 5.4e-13 78.6 88 47.7
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 7.0e-13 78.2 82 46.3
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 7.0e-13 78.2 127 33.1
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 7.0e-13 78.2 80 48.8
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 7.0e-13 78.2 86 44.2
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 9.2e-13 77.8 232 32.3
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.2e-12 77.4 114 43.9
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 1.6e-12 77.0 85 44.7
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 2.0e-12 76.6 86 43.0
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.0e-12 76.6 85 50.6
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 4.6e-12 75.5 85 45.9
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 4.6e-12 75.5 65 56.9
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 4.6e-12 75.5 109 40.4
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 6.0e-12 75.1 88 46.6
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 6.0e-12 75.1 85 47.1
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 6.0e-12 75.1 85 47.1
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 6.0e-12 75.1 82 50.0
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 6.0e-12 75.1 91 45.1
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 6.0e-12 75.1 56 60.7
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 7.8e-12 74.7 85 48.2
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 7.8e-12 74.7 90 45.6
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 1.0e-11 74.3 85 47.1
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 1.7e-11 73.6 82 47.6
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 2.3e-11 73.2 90 46.7
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 3.9e-11 72.4 114 34.2
Lsat_1_v5_gn_5_117240 Lactuca sativa HOM05D003497 ORTHO05D003964 6.6e-11 71.6 71 49.3
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 6.6e-11 71.6 86 44.2
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 6.6e-11 71.6 85 43.5
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 8.6e-11 71.2 82 46.3
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 8.6e-11 71.2 91 42.9
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 1.1e-10 70.9 82 46.3
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.1e-10 70.9 68 51.5
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 1.1e-10 70.9 65 58.5
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 1.5e-10 70.5 80 45.0
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 1.5e-10 70.5 49 65.3
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 2.5e-10 69.7 58 56.9
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 3.3e-10 69.3 65 55.4
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 4.3e-10 68.9 82 45.1
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 4.3e-10 68.9 85 42.4
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 7.3e-10 68.2 65 53.8
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 7.3e-10 68.2 65 53.8
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 9.5e-10 67.8 65 53.8
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 9.5e-10 67.8 85 47.1
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 1.2e-09 67.4 65 53.8
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 1.2e-09 67.4 74 45.9
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.6e-09 67.0 65 52.3
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 1.6e-09 67.0 64 54.7
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 2.1e-09 66.6 87 47.1
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 3.6e-09 65.9 91 39.6
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 6.2e-09 65.1 97 38.1
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 6.2e-09 65.1 82 43.9
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 6.2e-09 65.1 91 38.5
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 8.0e-09 64.7 106 37.7
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 1.4e-08 63.9 69 40.6
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 1.8e-08 63.5 66 47.0
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.3e-08 63.2 120 34.2
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 3.1e-08 62.8 120 34.2
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.1e-08 62.8 120 34.2
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 3.1e-08 62.8 98 41.8
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 5.2e-08 62.0 64 43.8
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 6.8e-08 61.6 55 60.0
CBR_g19394 Chara braunii HOM05D003497 ORTHO05D003964 6.8e-08 61.6 86 41.9
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 2.0e-07 60.1 66 42.4
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 4.4e-07 58.9 60 48.3
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 5.8e-07 58.5 57 47.4
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 1.7e-06 57.0 64 42.2
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 2.2e-06 56.6 46 50.0
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 8.3e-06 54.7 51 56.9
FvH4_4g04631 Fragaria vesca HOM05D003497 ORTHO05D003964 8.3e-06 54.7 62 45.2
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 8.3e-06 54.7 55 50.9
Zm00001eb051260 Zea mays HOM05D028645 ORTHO05D030730 8.3e-06 54.7 40 55.0
Zm00001eb197560 Zea mays HOM05D028645 ORTHO05D030730 8.3e-06 54.7 40 55.0
Zm00001eb293930 Zea mays HOM05D028645 ORTHO05D030730 8.3e-06 54.7 40 55.0
Zm00001eb313830 Zea mays HOM05D028645 ORTHO05D030730 8.3e-06 54.7 40 55.0


User provided reference genes

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