Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 4.9e-63 244.2 115 100.0
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 7.8e-53 210.3 115 87.8
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 6.4e-39 164.1 102 79.4
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 1.3e-26 123.2 112 55.4
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 1.5e-24 116.3 114 50.9
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 1.7e-23 112.8 120 46.7
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 9.3e-22 107.1 92 53.3
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.2e-21 106.7 110 49.1
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 3.5e-21 105.1 94 54.3
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 7.9e-21 104.0 110 47.3
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 7.9e-21 104.0 113 46.9
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 2.3e-20 102.4 110 50.9
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 2.3e-20 102.4 104 49.0
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 5.1e-20 101.3 103 44.7
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 5.1e-20 101.3 103 54.4
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 6.7e-20 100.9 98 50.0
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 1.1e-19 100.1 94 50.0
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 1.5e-19 99.8 106 50.9
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.9e-19 99.4 106 45.3
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.9e-19 99.4 106 45.3
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 3.3e-19 98.6 88 51.1
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 4.3e-19 98.2 105 51.4
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 5.7e-19 97.8 97 52.6
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 9.7e-19 97.1 112 42.0
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.6e-18 96.3 97 51.5
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 6.3e-18 94.4 89 51.7
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 8.2e-18 94.0 109 45.9
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 8.2e-18 94.0 111 46.8
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 1.4e-17 93.2 83 51.8
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 3.1e-17 92.0 121 43.8
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 3.1e-17 92.0 108 45.4
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 1.2e-16 90.1 98 44.9
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.5e-16 89.7 76 55.3
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 1.5e-16 89.7 89 46.1
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 5.9e-16 87.8 104 46.2
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 5.9e-16 87.8 92 45.7
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 7.7e-16 87.4 105 45.7
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 7.7e-16 87.4 53 62.3
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 7.7e-16 87.4 71 59.2
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 7.7e-16 87.4 107 46.7
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 1.7e-15 86.3 96 41.7
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.7e-15 86.3 56 64.3
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 2.2e-15 85.9 118 44.9
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 3.8e-15 85.1 106 38.7
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 5.0e-15 84.7 96 41.7
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 5.0e-15 84.7 115 47.0
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 5.0e-15 84.7 115 47.0
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 6.5e-15 84.3 107 40.2
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 8.5e-15 84.0 96 46.9
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 8.5e-15 84.0 114 46.5
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.1e-14 83.6 109 40.4
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 1.1e-14 83.6 58 60.3
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 1.4e-14 83.2 61 59.0
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.4e-14 83.2 80 51.2
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 1.9e-14 82.8 95 42.1
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.9e-14 82.8 53 64.2
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.5e-14 82.4 118 43.2
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 2.5e-14 82.4 96 39.6
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 3.2e-14 82.0 88 50.0
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 5.5e-14 81.3 115 46.1
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 5.5e-14 81.3 109 39.4
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 9.4e-14 80.5 59 57.6
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 1.2e-13 80.1 91 42.9
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.7e-13 79.0 62 54.8
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 3.6e-13 78.6 109 34.9
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 3.6e-13 78.6 101 40.6
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 4.6e-13 78.2 96 40.6
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 4.6e-13 78.2 111 38.7
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 6.1e-13 77.8 79 46.8
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 7.9e-13 77.4 103 42.7
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 7.9e-13 77.4 109 45.0
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 7.9e-13 77.4 49 63.3
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 1.4e-12 76.6 113 41.6
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 1.8e-12 76.3 82 51.2
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.3e-12 75.9 56 57.1
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 3.0e-12 75.5 51 56.9
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 3.0e-12 75.5 51 56.9
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 3.0e-12 75.5 51 56.9
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 3.0e-12 75.5 51 56.9
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 3.0e-12 75.5 51 56.9
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 3.0e-12 75.5 103 42.7
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 3.9e-12 75.1 47 63.8
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 3.9e-12 75.1 108 41.7
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 3.9e-12 75.1 103 40.8
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 5.1e-12 74.7 67 49.3
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 6.7e-12 74.3 85 44.7
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 8.8e-12 73.9 106 38.7
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 8.8e-12 73.9 51 58.8
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.1e-11 73.6 112 40.2
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 1.1e-11 73.6 49 49.0
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 1.5e-11 73.2 56 53.6
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 1.5e-11 73.2 99 40.4
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 1.5e-11 73.2 42 61.9
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 2.0e-11 72.8 106 39.6
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 2.0e-11 72.8 44 59.1
SGA_v2.0_scaffold624G53237 Striga asiatica HOM05D006153 ORTHO05D007701 3.3e-11 72.0 48 56.2
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 9.7e-11 70.5 95 37.9
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 9.7e-11 70.5 61 49.2
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 1.3e-10 70.1 49 59.2
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 1.7e-10 69.7 44 54.5
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 1.7e-10 69.7 70 42.9
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 2.2e-10 69.3 45 53.3
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 2.8e-10 68.9 111 41.4
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 2.8e-10 68.9 111 41.4
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 2.8e-10 68.9 114 39.5
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 2.8e-10 68.9 56 55.4
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 2.8e-10 68.9 42 59.5
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 4.8e-10 68.2 107 41.1
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 4.8e-10 68.2 107 41.1
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 4.8e-10 68.2 49 55.1
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 6.3e-10 67.8 44 54.5
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 6.3e-10 67.8 74 41.9
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 1.1e-09 67.0 59 42.4
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 1.4e-09 66.6 51 52.9
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 1.4e-09 66.6 43 53.5
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 1.8e-09 66.2 107 40.2
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.8e-09 66.2 43 51.2
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 2.4e-09 65.9 43 51.2
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 2.4e-09 65.9 49 53.1
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 2.4e-09 65.9 50 56.0
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 2.4e-09 65.9 59 42.4
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 3.1e-09 65.5 54 50.0
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 4.1e-09 65.1 60 50.0
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 4.1e-09 65.1 98 37.8
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 1.5e-08 63.2 39 53.8
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 2.6e-08 62.4 43 46.5
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 5.0e-07 58.2 43 48.8
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 1.4e-06 56.6 39 56.4
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 3.2e-06 55.5 38 47.4
Aqoxy6G02750 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 7.2e-06 54.3 43 51.2
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 7.2e-06 54.3 41 46.3
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 9.4e-06 53.9 46 43.5


User provided reference genes

Program Settings