Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 0.0e+00 1239.6 657 100.0
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 0.0e+00 1122.1 658 92.4
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 3.7e-248 861.7 658 71.3
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 1.6e-243 846.3 659 71.2
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 4.2e-236 821.6 656 70.1
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 4.7e-235 818.1 657 69.1
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 4.5e-230 801.6 659 68.1
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 4.7e-227 791.6 659 67.4
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 8.0e-227 790.8 659 67.4
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 2.3e-226 789.3 651 66.7
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 1.2e-225 786.9 654 66.1
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 4.9e-224 781.6 656 65.5
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.8e-223 779.6 661 65.7
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 9.2e-223 777.3 655 66.7
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 3.9e-221 771.9 660 65.9
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 8.6e-221 770.8 654 65.4
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 5.6e-220 768.1 634 66.4
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 5.6e-220 768.1 660 65.6
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 1.6e-219 766.5 525 78.7
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 2.1e-219 766.1 655 64.6
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 2.8e-219 765.8 688 62.2
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 8.0e-219 764.2 655 64.6
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 1.5e-217 760.0 634 66.2
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 3.4e-217 758.8 652 65.2
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 6.4e-216 754.6 715 60.1
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 9.2e-215 750.7 648 65.0
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 2.7e-214 749.2 661 64.3
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 1.0e-213 747.3 653 62.3
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 3.0e-213 745.7 646 64.4
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 2.5e-212 742.7 682 62.3
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 6.2e-211 738.0 671 63.8
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 6.4e-208 728.0 654 62.8
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 6.4e-208 728.0 679 61.1
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 8.3e-208 727.6 679 61.1
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 7.8e-206 721.1 650 62.5
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 7.8e-206 721.1 649 62.6
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 3.0e-205 719.2 643 62.4
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 5.1e-205 718.4 653 63.7
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 1.6e-203 713.4 648 63.0
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 4.7e-203 711.8 619 63.3
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 3.1e-202 709.1 664 61.1
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 8.9e-202 707.6 797 53.1
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 1.7e-200 703.4 648 63.9
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 4.1e-199 698.7 648 63.1
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 9.2e-199 697.6 635 61.7
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 3.5e-198 695.7 649 60.6
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 3.0e-197 692.6 679 61.1
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 8.1e-195 684.5 639 62.8
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 6.9e-194 681.4 651 58.4
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 8.4e-192 674.5 656 58.1
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.4e-191 673.7 607 62.6
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 2.1e-190 669.8 663 59.1
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 7.8e-190 667.9 757 54.6
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 4.3e-188 662.1 651 58.1
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 7.3e-188 661.4 660 58.6
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 8.1e-187 657.9 650 57.1
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 2.4e-186 656.4 650 57.1
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 1.5e-185 653.7 652 56.9
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 9.3e-183 644.4 670 56.1
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 2.1e-179 633.3 630 57.8
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 1.5e-177 627.1 649 55.3
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 5.8e-177 625.2 603 58.9
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 7.6e-177 624.8 650 55.8
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 1.7e-176 623.6 646 55.4
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 2.7e-174 616.3 689 51.7
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 6.0e-174 615.1 659 56.1
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 3.0e-173 612.8 660 55.3
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 2.8e-171 606.3 647 54.9
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 4.8e-171 605.5 674 53.0
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 4.0e-170 602.4 646 54.2
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.2e-169 600.9 646 54.3
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 1.5e-169 600.5 674 52.8
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 1.0e-168 597.8 698 51.4
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 1.1e-167 594.3 674 51.9
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 2.1e-166 590.1 674 52.2
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 2.3e-165 586.6 526 62.0
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 3.3e-164 582.8 698 50.9
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 1.1e-162 577.8 668 53.0
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 1.0e-157 561.2 631 51.5
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 1.3e-155 554.3 451 66.5
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 5.3e-154 548.9 655 49.0
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 3.2e-151 539.7 451 66.5
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 6.7e-149 531.9 597 51.9
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 1.1e-148 531.2 660 48.5
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 4.1e-146 522.7 666 49.1
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 1.3e-144 517.7 477 60.0
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.4e-143 514.2 426 65.5
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 1.2e-134 484.6 484 57.2
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 1.4e-133 481.1 713 44.3
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 6.3e-131 472.2 530 54.3
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 1.6e-129 467.6 667 45.0
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 7.2e-127 458.8 670 43.9
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 1.5e-124 451.1 655 46.4
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.1e-122 444.9 424 59.4
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 1.2e-121 441.4 653 44.1
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 9.5e-119 431.8 500 52.4
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 5.2e-117 426.0 667 43.2
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 4.9e-115 419.5 460 55.0
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 3.1e-114 416.8 659 43.2
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 7.3e-111 405.6 646 42.3
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 8.0e-110 402.1 498 48.0
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 7.3e-95 352.4 843 35.5
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 7.6e-84 315.8 217 74.7
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 5.2e-77 293.1 509 39.5
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.3e-75 288.5 368 52.4
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 1.5e-68 265.0 332 51.8
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 2.4e-66 257.7 165 80.6
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 5.4e-66 256.5 270 59.3
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 4.6e-57 226.9 217 58.5
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.4e-53 215.3 151 78.1
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 2.4e-53 214.5 812 28.0
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 1.3e-51 208.8 154 72.1
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 1.1e-50 205.7 750 29.3
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 2.8e-46 191.0 221 48.9
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 1.9e-42 178.3 311 41.5
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 4.6e-41 173.7 190 52.1
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 7.9e-33 146.4 182 46.2
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 5.0e-27 127.1 102 67.6
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 8.8e-24 116.3 79 77.2
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.9e-20 103.6 94 64.9
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.0e-19 102.8 91 65.9
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 8.5e-19 99.8 90 67.8
Sc18g0007390 Simmondsia chinensis HOM05D006229 ORTHO05D007190 2.8e-14 84.7 227 30.4
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.4e-13 82.4 94 51.1
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 7.7e-12 76.6 53 73.6
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 1.1e-10 72.8 47 76.6
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 8.0e-09 66.6 50 74.0
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 8.8e-08 63.2 85 40.0
SHI04983 Sapria himalayana HOM05D000023 ORTHO05D000014 1.3e-06 59.3 134 35.8
CSS0040212 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D007190 6.3e-06 57.0 41 73.2


User provided reference genes

Program Settings