Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004661 Carpinus fangiana HOM05D008433 ORTHO05D009918 2.6e-89 332.0 170 100.0
CiPaw.01G081400 Carya illinoinensis HOM05D008433 ORTHO05D009918 2.1e-33 146.4 173 54.3
TWI14G1180 Tripterygium wilfordii HOM05D008433 ORTHO05D009918 1.4e-21 107.1 169 42.6
TAR629G1417 Trochodendron aralioides HOM05D008433 ORTHO05D009918 5.2e-21 105.1 159 41.5
Prupe.2G196100 Prunus persica HOM05D013717 ORTHO05D009918 9.9e-20 100.9 187 42.8
CANSAT56G3323 Cannabis sativa HOM05D013717 ORTHO05D009918 2.1e-17 93.2 183 42.6
Duzib138G0947 Durio zibethinus HOM05D008433 ORTHO05D009918 6.0e-17 91.7 117 47.9
Cpa.g.sc141.14 Carica papaya HOM05D008433 ORTHO05D009918 7.8e-17 91.3 169 40.2
Thecc.01G334700 Theobroma cacao HOM05D008433 ORTHO05D009918 2.3e-16 89.7 111 45.9
FAN03G0231 Fragaria x ananassa HOM05D013717 ORTHO05D009918 5.6e-15 85.1 161 42.2
FAN06G2608 Fragaria x ananassa HOM05D013717 ORTHO05D009918 5.6e-15 85.1 160 42.5
FAN10G3359 Fragaria x ananassa HOM05D013717 ORTHO05D009918 9.6e-15 84.3 160 42.5
Manes.05G017500 Manihot esculenta HOM05D008433 ORTHO05D009918 1.3e-14 84.0 124 45.2
FAN01G0488 Fragaria x ananassa HOM05D013717 ORTHO05D009918 1.6e-14 83.6 161 42.2
RcHm_v2.0_Chr1g0360901 Rosa chinensis HOM05D013717 ORTHO05D009918 1.6e-14 83.6 169 39.6
Potri.002G178100 Populus trichocarpa HOM05D008433 ORTHO05D009918 2.1e-14 83.2 132 43.2
AL4G46200 Arabidopsis lyrata HOM05D008433 ORTHO05D009918 4.8e-14 82.0 178 36.0
FAN10G3789 Fragaria x ananassa HOM05D013717 ORTHO05D009918 1.1e-13 80.9 176 40.9
AUR62004552 Chenopodium quinoa HOM05D008433 ORTHO05D009918 2.4e-13 79.7 163 35.6
ClCG06G002750 Citrullus lanatus HOM05D029570 ORTHO05D009918 2.4e-13 79.7 166 38.0
AUR62022666 Chenopodium quinoa HOM05D008433 ORTHO05D009918 4.0e-13 79.0 142 36.6
Sabra02G0135500 Salix brachista HOM05D008433 ORTHO05D009918 4.0e-13 79.0 137 39.4
Carub.0004s2944 Capsella rubella HOM05D008433 ORTHO05D009918 5.3e-13 78.6 178 34.3
Ciclev10023317m.g Citrus clementina HOM05D008433 ORTHO05D009918 5.3e-13 78.6 169 34.9
CARHR142080 Cardamine hirsuta HOM05D008433 ORTHO05D009918 1.2e-12 77.4 179 35.8
Thhalv10001667m.g Eutrema salsugineum HOM05D008433 ORTHO05D009918 1.5e-12 77.0 91 46.2
CANSAT56G2967 Cannabis sativa HOM05D013717 ORTHO05D009918 2.0e-12 76.6 182 39.0
Actinidia28092 Actinidia chinensis HOM05D013717 ORTHO05D009918 2.6e-12 76.3 130 43.8
CSS0049417 Camellia sinensis var. sinensis HOM05D008433 ORTHO05D009918 3.4e-12 75.9 189 36.0
BcaC02g07009 Brassica carinata HOM05D008433 ORTHO05D009918 1.3e-11 73.9 143 35.0
A04p34600 Brassica napus HOM05D008433 ORTHO05D009918 1.7e-11 73.6 181 33.1
BraA04t18918Z Brassica rapa HOM05D008433 ORTHO05D009918 1.7e-11 73.6 181 33.1
Ah.05g179030 Amaranthus hybridus HOM05D008433 ORTHO05D009918 2.2e-11 73.2 163 37.4
Oeu046652.1 Olea europaea HOM05D008433 ORTHO05D009918 2.2e-11 73.2 116 40.5
Rhsim01G0179000 Rhododendron simsii HOM05D008433 ORTHO05D009918 2.9e-11 72.8 138 39.1
Aa31LG1G28120 Aethionema arabicum HOM05D008433 ORTHO05D009918 3.8e-11 72.4 84 51.2
BcaB06g29468 Brassica carinata HOM05D008433 ORTHO05D009918 3.8e-11 72.4 174 31.0
Phvul.009G257200 Phaseolus vulgaris HOM05D008433 ORTHO05D009918 6.4e-11 71.6 119 38.7
AT2G46735 Arabidopsis thaliana HOM05D008433 ORTHO05D009918 1.9e-10 70.1 180 33.3
TPR.G22611 Trifolium pratense HOM05D008433 ORTHO05D009918 5.4e-10 68.6 78 47.4
Lj1g0005818 Lotus japonicus HOM05D008433 ORTHO05D009918 9.3e-10 67.8 105 43.8
Nitab4.5_0002053g0010 Nicotiana tabacum HOM05D018587 ORTHO05D009918 1.2e-09 67.4 185 32.4
Sed0019953 Sechium edule HOM05D029570 ORTHO05D009918 1.2e-09 67.4 175 33.7
C04p72390 Brassica napus HOM05D008433 ORTHO05D009918 1.6e-09 67.0 135 34.1
BolC4t28725H Brassica oleracea HOM05D008433 ORTHO05D009918 1.6e-09 67.0 135 34.1
MELO3C022252.2 Cucumis melo HOM05D029570 ORTHO05D009918 1.6e-09 67.0 181 35.4
CsaV3_6G008920 Cucumis sativus L. HOM05D029570 ORTHO05D009918 1.6e-09 67.0 179 34.6
VMungo1309G0842 Vigna mungo HOM05D008433 ORTHO05D009918 2.1e-09 66.6 125 39.2
CDE06G1173 Ceratophyllum demersum HOM05D051512 ORTHO05D009918 2.7e-09 66.2 147 35.4
BcaC02g07007 Brassica carinata HOM05D008433 ORTHO05D009918 3.5e-09 65.9 176 30.1
Glyma.19G259100 Glycine max HOM05D008433 ORTHO05D009918 3.5e-09 65.9 119 39.5
Gohir.D11G104900 Gossypium hirsutum HOM05D008433 ORTHO05D009918 3.5e-09 65.9 99 41.4
Gorai.007G112200 Gossypium raimondii HOM05D008433 ORTHO05D009918 3.5e-09 65.9 99 41.4
MBI12_g42093_MAGBIO Magnolia biondii HOM05D008433 ORTHO05D009918 4.6e-09 65.5 171 33.9
Gohir.A11G100200 Gossypium hirsutum HOM05D008433 ORTHO05D009918 7.9e-09 64.7 99 40.4
A05p01070 Brassica napus HOM05D000145 ORTHO05D013968 1.0e-08 64.3 178 29.8
BraA05t19107Z Brassica rapa HOM05D000145 ORTHO05D013968 1.0e-08 64.3 178 29.8
Oeu015062.1 Olea europaea HOM05D008433 ORTHO05D009918 1.3e-08 63.9 117 42.7
Lalb_Chr18g0044671 Lupinus albus HOM05D008433 ORTHO05D009918 2.3e-08 63.2 160 32.5
Hma1.2p1_1697F.1_g298100 Hydrangea macrophylla HOM05D008433 ORTHO05D009918 3.0e-08 62.8 149 33.6
Nn1g00412 Nelumbo nucifera HOM05D033573 ORTHO05D009918 3.0e-08 62.8 132 37.1
BcaNung03892 Brassica carinata HOM05D008433 ORTHO05D009918 3.9e-08 62.4 82 41.5
Psat3g000840 Pisum sativum HOM05D008433 ORTHO05D009918 3.9e-08 62.4 150 32.7
BolC4t21776H Brassica oleracea HOM05D000145 ORTHO05D013968 1.9e-07 60.1 178 27.5
Atru.chr5.753 Acer truncatum HOM05D008433 ORTHO05D009918 3.3e-07 59.3 173 33.5
BcaC02g12646 Brassica carinata HOM05D008433 ORTHO05D009918 4.3e-07 58.9 129 31.0
PGR031G3198 Punica granatum HOM05D008433 ORTHO05D009918 5.6e-07 58.5 110 35.5
GSVIVG01027424001 Vitis vinifera HOM05D000145 ORTHO05D000115 5.6e-07 58.5 86 43.0
C04p01210 Brassica napus HOM05D000145 ORTHO05D013968 7.4e-07 58.2 82 39.0
Nitab4.5_0003094g0050 Nicotiana tabacum HOM05D018587 ORTHO05D009918 7.4e-07 58.2 183 32.8
MSTRG.20921 Avicennia marina HOM05D008433 ORTHO05D009918 1.6e-06 57.0 167 32.3
COL.COLO4_06213 Corchorus olitorius HOM05D008433 ORTHO05D009918 3.7e-06 55.8 87 40.2
ATR0579G055 Amborella trichopoda HOM05D032616 ORTHO05D031091 4.8e-06 55.5 176 27.3
Medtr7g118130 Medicago truncatula HOM05D008433 ORTHO05D009918 8.1e-06 54.7 82 41.5


User provided reference genes

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