Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 0.0e+00 1608.2 921 100.0
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 0.0e+00 1400.6 930 90.0
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 5.9e-268 927.9 939 61.0
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 2.3e-243 846.3 933 63.1
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 5.8e-215 751.9 944 51.7
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 1.4e-213 747.3 936 54.5
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 6.0e-212 741.9 946 54.3
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.1e-210 737.6 928 53.8
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 1.2e-204 717.6 931 54.2
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 4.3e-202 709.1 919 53.1
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 7.3e-202 708.4 951 54.6
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 8.1e-201 704.9 935 51.3
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 1.1e-197 694.5 928 50.6
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.9e-197 693.7 943 48.5
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.4e-189 666.8 944 47.2
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 7.1e-189 665.2 884 50.1
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.2e-188 664.5 927 52.6
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 7.9e-188 661.8 919 52.4
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 8.7e-187 658.3 918 50.0
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.1e-184 651.4 919 52.2
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 5.3e-184 649.0 919 52.2
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 9.0e-184 648.3 927 52.0
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 7.6e-183 645.2 926 52.5
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 1.4e-181 641.0 927 52.3
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 6.7e-179 632.1 948 46.0
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.8e-177 626.7 948 45.9
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.1e-176 624.8 919 51.3
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 7.6e-175 618.6 944 44.8
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 1.3e-174 617.8 920 47.4
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 8.5e-174 615.1 1092 44.6
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 5.1e-171 605.9 861 47.5
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.5e-170 604.4 887 47.8
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 8.2e-169 598.6 918 46.9
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.7e-166 590.9 976 46.3
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.1e-165 588.2 959 46.1
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 7.2e-165 585.5 892 45.5
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 3.1e-160 570.1 1033 44.1
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 6.7e-155 552.4 750 50.5
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 2.6e-154 550.4 874 44.9
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.3e-153 548.1 862 48.8
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 1.6e-151 541.2 827 51.4
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 2.0e-151 540.8 840 49.9
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 6.5e-150 535.8 844 45.4
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 8.5e-150 535.4 927 42.3
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 4.2e-149 533.1 896 43.6
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 3.6e-148 530.0 874 44.1
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 8.0e-148 528.9 889 44.8
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 3.0e-147 526.9 871 47.9
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 1.3e-145 521.5 829 46.2
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 1.4e-144 518.1 913 42.4
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 1.7e-142 511.1 993 43.5
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 5.5e-141 506.1 953 43.5
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 8.8e-139 498.8 1002 42.7
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 1.5e-138 498.0 918 41.4
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 3.7e-137 493.4 888 45.7
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 6.3e-137 492.7 939 41.1
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 1.8e-136 491.1 736 45.8
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.0e-134 485.3 923 45.8
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 2.8e-132 477.2 941 43.8
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 6.1e-132 476.1 449 61.7
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 1.4e-131 474.9 925 44.9
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 3.0e-131 473.8 921 40.4
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 5.7e-130 469.5 814 44.5
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 9.8e-130 468.8 810 44.0
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 3.1e-128 463.8 966 39.5
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 3.8e-126 456.8 468 58.1
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 2.0e-119 434.5 424 60.8
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 1.1e-117 428.7 820 40.5
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 3.3e-117 427.2 831 41.3
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 3.3e-117 427.2 958 39.0
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 4.0e-115 420.2 804 42.2
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 5.8e-114 416.4 956 39.5
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 7.0e-112 409.5 502 51.6
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 9.2e-112 409.1 814 43.9
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 8.6e-110 402.5 908 40.5
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 1.1e-109 402.1 960 38.1
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 1.1e-107 395.6 956 38.1
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 8.9e-107 392.5 923 36.4
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 2.0e-106 391.3 875 37.7
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 1.3e-105 388.7 926 37.9
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 4.9e-105 386.7 947 37.5
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 8.3e-105 386.0 967 36.6
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 1.6e-103 381.7 951 37.6
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 3.0e-102 377.5 949 37.2
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 2.5e-101 374.4 502 47.4
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 8.1e-100 369.4 960 36.7
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 2.2e-97 361.3 947 35.8
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 2.2e-97 361.3 892 35.3
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 1.3e-94 352.1 897 36.6
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 1.6e-92 345.1 447 48.3
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 7.6e-90 336.3 392 52.8
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 1.0e-86 325.9 456 49.1
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 9.6e-85 319.3 872 36.6
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 2.6e-82 311.2 934 34.4
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 2.7e-79 301.2 408 47.3
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 7.1e-64 250.0 612 41.2
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 5.9e-58 230.3 739 31.1
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.7e-49 202.2 361 39.1
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.7e-49 202.2 361 39.1
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.2e-47 196.1 354 42.4
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 6.3e-44 183.7 898 28.2
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 1.3e-41 176.0 149 65.1
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.6e-39 169.1 320 45.3
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 1.1e-37 162.9 295 42.7
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 8.5e-33 146.7 182 53.3
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 7.2e-32 143.7 418 33.5
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 1.4e-30 139.4 170 54.7
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 3.3e-29 134.8 203 53.7
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 5.7e-29 134.0 133 58.6
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 2.8e-28 131.7 97 69.1
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 3.7e-28 131.3 234 42.3
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 2.4e-27 128.6 95 72.6
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 1.0e-22 113.2 235 35.7
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.0e-22 113.2 141 50.4
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.0e-22 111.7 108 60.2
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 1.8e-19 102.4 112 57.1
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 2.9e-17 95.1 375 30.4
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 1.1e-11 76.6 125 44.8
RcHm_v2.0_Chr4g0421911 Rosa chinensis HOM05D006481 ORTHO05D008160 1.5e-08 66.2 81 53.1
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.9e-08 65.9 74 56.8
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 2.5e-08 65.5 56 58.9
Glyma.10G258901 Glycine max HOM05D006481 ORTHO05D008160 2.5e-08 65.5 79 49.4


User provided reference genes

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