Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004655 Carpinus fangiana HOM05D006153 ORTHO05D007701 4.5e-48 194.1 90 100.0
Haze_10254 Corylus avellana HOM05D006153 ORTHO05D007701 7.0e-41 170.2 88 90.9
CiPaw.05G015200 Carya illinoinensis HOM05D006153 ORTHO05D007701 8.9e-20 100.1 95 64.2
QL11p031990 Quercus lobata HOM05D006153 ORTHO05D007701 2.0e-19 99.0 78 57.7
Duzib132G0541 Durio zibethinus HOM05D006153 ORTHO05D007701 8.4e-18 93.6 86 57.0
Gohir.A01G008400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 2.1e-16 89.0 87 54.0
Sabra16G0186000 Salix brachista HOM05D006153 ORTHO05D007701 3.5e-16 88.2 86 50.0
Gorai.002G009800 Gossypium raimondii HOM05D006153 ORTHO05D007701 1.3e-15 86.3 87 52.9
Manes.10G074900 Manihot esculenta HOM05D006153 ORTHO05D007701 2.3e-15 85.5 62 66.1
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 8.7e-15 83.6 86 51.2
RcHm_v2.0_Chr6g0253971 Rosa chinensis HOM05D006153 ORTHO05D007701 8.7e-15 83.6 95 47.4
FAN20G1027 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.1e-14 83.2 95 49.5
Dinv42217 Davidia involucrata HOM05D006153 ORTHO05D007701 1.5e-14 82.8 81 50.6
FAN24G1230 Fragaria x ananassa HOM05D006153 ORTHO05D007701 1.5e-14 82.8 95 48.4
Manes.07G064400 Manihot esculenta HOM05D006153 ORTHO05D007701 1.5e-14 82.8 101 49.5
Potri.001G296900 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.5e-14 82.8 86 50.0
Potri.009G091100 Populus trichocarpa HOM05D006153 ORTHO05D007701 1.5e-14 82.8 88 45.5
Actinidia34374 Actinidia chinensis HOM05D006153 ORTHO05D007701 1.9e-14 82.4 64 56.2
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 1.9e-14 82.4 49 73.5
GSVIVG01037871001 Vitis vinifera HOM05D006153 ORTHO05D007701 2.5e-14 82.0 85 52.9
FvH4_2g04480 Fragaria vesca HOM05D006153 ORTHO05D007701 3.3e-14 81.6 95 47.4
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 4.3e-14 81.3 86 50.0
PGR042G3678 Punica granatum HOM05D006153 ORTHO05D007701 4.3e-14 81.3 95 45.3
VMungo0720G0345 Vigna mungo HOM05D006153 ORTHO05D007701 4.3e-14 81.3 82 53.7
Cfa004694 Carpinus fangiana HOM05D006153 ORTHO05D007701 7.3e-14 80.5 88 50.0
Lalb_Chr06g0165291 Lupinus albus HOM05D006153 ORTHO05D007701 7.3e-14 80.5 59 66.1
Phvul.007G043000 Phaseolus vulgaris HOM05D006153 ORTHO05D007701 7.3e-14 80.5 61 60.7
GSVIVG01037872001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.2e-13 79.7 85 51.8
Glyma.20G131700 Glycine max HOM05D006153 ORTHO05D007701 1.6e-13 79.3 81 53.1
Haze_10299 Corylus avellana HOM05D006153 ORTHO05D007701 2.1e-13 79.0 83 50.6
FAN27G0726 Fragaria x ananassa HOM05D006153 ORTHO05D007701 2.1e-13 79.0 97 47.4
Glyma.10G259200 Glycine max HOM05D006153 ORTHO05D007701 2.8e-13 78.6 85 51.8
FAN15G1936 Fragaria x ananassa HOM05D006153 ORTHO05D007701 3.6e-13 78.2 95 49.5
Prupe.8G140400 Prunus persica HOM05D006153 ORTHO05D007701 4.7e-13 77.8 91 48.4
AL3G32960 Arabidopsis lyrata HOM05D006153 ORTHO05D007701 6.2e-13 77.4 48 75.0
Gohir.D13G044400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 6.2e-13 77.4 82 51.2
Gorai.013G049200 Gossypium raimondii HOM05D006153 ORTHO05D007701 6.2e-13 77.4 82 51.2
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 8.1e-13 77.0 87 49.4
Eucgr.G00438 Eucalyptus grandis HOM05D006153 ORTHO05D007701 1.1e-12 76.6 91 49.5
GSVIVG01037873001 Vitis vinifera HOM05D006153 ORTHO05D007701 1.1e-12 76.6 93 49.5
MD10G1102200 Malus domestica HOM05D006153 ORTHO05D007701 1.4e-12 76.3 48 66.7
TAR381G0917 Trochodendron aralioides HOM05D006153 ORTHO05D007701 1.4e-12 76.3 83 48.2
AT3G19550 Arabidopsis thaliana HOM05D006153 ORTHO05D007701 1.8e-12 75.9 56 64.3
BcaB06g26014 Brassica carinata HOM05D006153 ORTHO05D007701 1.8e-12 75.9 48 68.8
MD05G1096000 Malus domestica HOM05D006153 ORTHO05D007701 3.1e-12 75.1 48 66.7
Peaxi162Scf00003g00261 Petunia axillaris HOM05D006153 ORTHO05D007701 3.1e-12 75.1 78 50.0
BcaC05g28465 Brassica carinata HOM05D006153 ORTHO05D007701 4.0e-12 74.7 48 66.7
A05p30090 Brassica napus HOM05D006153 ORTHO05D007701 4.0e-12 74.7 48 66.7
C05p45510 Brassica napus HOM05D006153 ORTHO05D007701 4.0e-12 74.7 48 66.7
BolC5t33274H Brassica oleracea HOM05D006153 ORTHO05D007701 4.0e-12 74.7 48 66.7
BraA05t21849Z Brassica rapa HOM05D006153 ORTHO05D007701 4.0e-12 74.7 48 66.7
CSS0010428 Camellia sinensis var. sinensis HOM05D006153 ORTHO05D007701 4.0e-12 74.7 81 46.9
CARHR094970 Cardamine hirsuta HOM05D006153 ORTHO05D007701 4.0e-12 74.7 56 62.5
Sc14g0002580 Simmondsia chinensis HOM05D006153 ORTHO05D007701 4.0e-12 74.7 87 46.0
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 5.3e-12 74.3 61 55.7
BcaB04g20696 Brassica carinata HOM05D006153 ORTHO05D007701 6.9e-12 73.9 48 68.8
Duzib052G0610 Durio zibethinus HOM05D006153 ORTHO05D007701 9.0e-12 73.6 89 49.4
Nitab4.5_0002017g0030 Nicotiana tabacum HOM05D006153 ORTHO05D007701 1.2e-11 73.2 52 59.6
COL.COLO4_32545 Corchorus olitorius HOM05D006153 ORTHO05D007701 2.0e-11 72.4 55 56.4
Haze_10289 Corylus avellana HOM05D006153 ORTHO05D007701 2.0e-11 72.4 81 44.4
DCAR_001679 Daucus carota HOM05D006153 ORTHO05D007701 2.0e-11 72.4 80 51.2
Hma1.2p1_1174F.1_g263880 Hydrangea macrophylla HOM05D006153 ORTHO05D007701 2.0e-11 72.4 55 54.5
Nn5g30510 Nelumbo nucifera HOM05D006153 ORTHO05D007701 2.0e-11 72.4 84 46.4
Sp3g17600 Schrenkiella parvula HOM05D006153 ORTHO05D007701 2.0e-11 72.4 48 68.8
HanXRQChr16g0514921 Helianthus annuus HOM05D006153 ORTHO05D007701 2.6e-11 72.0 44 61.4
Thecc.02G113400 Theobroma cacao HOM05D006153 ORTHO05D007701 2.6e-11 72.0 85 48.2
TWI23G0900 Tripterygium wilfordii HOM05D006153 ORTHO05D007701 2.6e-11 72.0 53 66.0
PSO541G5112 Papaver somniferum HOM05D006153 ORTHO05D007701 3.4e-11 71.6 44 63.6
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 4.4e-11 71.2 43 69.8
BcaB04g20697 Brassica carinata HOM05D006153 ORTHO05D007701 5.8e-11 70.9 47 63.8
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 5.8e-11 70.9 52 57.7
BcaC09g48920 Brassica carinata HOM05D006153 ORTHO05D007701 7.6e-11 70.5 44 70.5
A01p35130 Brassica napus HOM05D006153 ORTHO05D007701 7.6e-11 70.5 47 70.2
C01p44580 Brassica napus HOM05D006153 ORTHO05D007701 7.6e-11 70.5 44 70.5
BraA01t03595Z Brassica rapa HOM05D006153 ORTHO05D007701 7.6e-11 70.5 47 70.2
Thhalv10021914m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 7.6e-11 70.5 48 66.7
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 7.6e-11 70.5 88 43.2
Actinidia27982 Actinidia chinensis HOM05D006153 ORTHO05D007701 9.9e-11 70.1 89 44.9
CsaV3_7G007950 Cucumis sativus L. HOM05D006153 ORTHO05D007701 9.9e-11 70.1 51 58.8
Rhsim05G0089900 Rhododendron simsii HOM05D006153 ORTHO05D007701 9.9e-11 70.1 48 62.5
Sed0025917 Sechium edule HOM05D006153 ORTHO05D007701 9.9e-11 70.1 65 53.8
Carub.0003s1938 Capsella rubella HOM05D006153 ORTHO05D007701 1.3e-10 69.7 48 64.6
Cpa.g.sc200.7 Carica papaya HOM05D006153 ORTHO05D007701 1.3e-10 69.7 92 47.8
Sopen01g049530 Solanum pennellii HOM05D006153 ORTHO05D007701 1.3e-10 69.7 69 50.7
Dinv15786 Davidia involucrata HOM05D006153 ORTHO05D007701 1.7e-10 69.3 58 56.9
BolC1t04422H Brassica oleracea HOM05D006153 ORTHO05D007701 2.9e-10 68.6 44 68.2
MELO3C018509.2 Cucumis melo HOM05D006153 ORTHO05D007701 2.9e-10 68.6 44 63.6
DCAR_001674 Daucus carota HOM05D006153 ORTHO05D007701 2.9e-10 68.6 46 67.4
Nitab4.5_0001105g0220 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.9e-10 68.6 51 58.8
Nitab4.5_0004685g0060 Nicotiana tabacum HOM05D006153 ORTHO05D007701 2.9e-10 68.6 51 58.8
Sabra09G0070400 Salix brachista HOM05D006153 ORTHO05D007701 2.9e-10 68.6 91 42.9
ClCG02G006680 Citrullus lanatus HOM05D006153 ORTHO05D007701 3.8e-10 68.2 85 40.0
Peaxi162Scf00016g00267 Petunia axillaris HOM05D006153 ORTHO05D007701 3.8e-10 68.2 48 62.5
Solyc01g107280.3 Solanum lycopersicum HOM05D006153 ORTHO05D007701 3.8e-10 68.2 69 49.3
A01p35140 Brassica napus HOM05D006153 ORTHO05D007701 4.9e-10 67.8 48 64.6
BraA01t03596Z Brassica rapa HOM05D006153 ORTHO05D007701 4.9e-10 67.8 48 64.6
Lj1g0020403 Lotus japonicus HOM05D006153 ORTHO05D007701 4.9e-10 67.8 88 44.3
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 6.4e-10 67.4 63 50.8
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 8.4e-10 67.0 51 54.9
DCAR_003609 Daucus carota HOM05D006153 ORTHO05D007701 8.4e-10 67.0 49 61.2
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 1.1e-09 66.6 43 60.5
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 1.9e-09 65.9 45 60.0
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 3.2e-09 65.1 43 58.1
Medtr5g005180 Medicago truncatula HOM05D006153 ORTHO05D007701 3.2e-09 65.1 44 63.6
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 3.2e-09 65.1 70 45.7
CANSAT25G0942 Cannabis sativa HOM05D006153 ORTHO05D007701 4.2e-09 64.7 51 60.8
Thhalv10021904m.g Eutrema salsugineum HOM05D006153 ORTHO05D007701 4.2e-09 64.7 48 62.5
Hund06709 Selenicereus undatus HOM05D006153 ORTHO05D007701 4.2e-09 64.7 49 57.1
Migut.I00275 Erythranthe guttata HOM05D006153 ORTHO05D007701 5.4e-09 64.3 44 61.4
Ca_24350_v3 Cicer arietinum L. HOM05D006153 ORTHO05D007701 7.1e-09 63.9 42 59.5
Ciclev10029838m.g Citrus clementina HOM05D006153 ORTHO05D007701 1.6e-08 62.8 66 50.0
MBI16_g15146_MAGBIO Magnolia biondii HOM05D006153 ORTHO05D007701 1.6e-08 62.8 49 53.1
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 1.6e-08 62.8 39 64.1
EL10Ac8g19360 Beta vulgaris HOM05D006153 ORTHO05D007701 2.7e-08 62.0 49 55.1
ECA234G4313 Erigeron canadensis HOM05D006153 ORTHO05D007701 2.7e-08 62.0 43 53.5
HanXRQChr13g0425861 Helianthus annuus HOM05D006153 ORTHO05D007701 2.7e-08 62.0 43 53.5
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 2.7e-08 62.0 60 50.0
PGSC0003DMG400025850 Solanum tuberosum HOM05D006153 ORTHO05D007701 2.7e-08 62.0 49 57.1
Oeu013772.1 Olea europaea HOM05D006153 ORTHO05D007701 4.6e-08 61.2 55 47.3
Eucgr.G01281 Eucalyptus grandis HOM05D006153 ORTHO05D007701 6.0e-08 60.8 84 40.5
Zm00001eb264740 Zea mays HOM05D006153 ORTHO05D007701 7.8e-08 60.5 40 60.0
AUR62031329 Chenopodium quinoa HOM05D006153 ORTHO05D007701 1.0e-07 60.1 59 44.1
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 1.0e-07 60.1 45 53.3
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 1.7e-07 59.3 57 50.9
TPR.G8325 Trifolium pratense HOM05D006153 ORTHO05D007701 1.7e-07 59.3 50 56.0
AUR62027357 Chenopodium quinoa HOM05D006153 ORTHO05D007701 2.3e-07 58.9 48 50.0
Gohir.A13G045400 Gossypium hirsutum HOM05D006153 ORTHO05D007701 3.9e-07 58.2 68 51.5
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 3.9e-07 58.2 47 48.9
ECA234G3366 Erigeron canadensis HOM05D006153 ORTHO05D007701 5.1e-07 57.8 41 53.7


User provided reference genes

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