Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 1.1e-179 633.3 326 100.0
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 8.7e-158 560.5 304 95.1
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 2.7e-130 469.2 328 79.6
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 5.7e-125 451.4 330 76.1
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 4.0e-102 375.6 327 65.7
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 5.0e-97 358.6 343 63.8
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 6.0e-90 335.1 338 59.8
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 7.8e-90 334.7 333 59.5
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 7.8e-90 334.7 338 59.8
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 3.9e-89 332.4 333 60.4
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 6.6e-89 331.6 338 59.2
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 1.1e-88 330.9 333 61.9
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 1.9e-88 330.1 340 58.8
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 2.5e-88 329.7 333 61.3
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 3.3e-88 329.3 332 60.8
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 8.1e-87 324.7 330 59.1
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 3.1e-86 322.8 333 59.8
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 6.4e-84 315.1 331 58.6
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 1.9e-83 313.5 333 58.3
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 1.3e-81 307.4 333 58.6
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 2.1e-79 300.1 353 56.7
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 1.2e-77 294.3 336 55.1
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 7.6e-77 291.6 336 56.2
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 2.4e-75 286.6 340 56.8
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 7.1e-75 285.0 334 54.5
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 7.8e-74 281.6 309 56.3
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 4.8e-71 272.3 339 54.9
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 1.1e-70 271.2 335 53.7
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 3.1e-70 269.6 341 54.8
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.5e-69 267.3 326 53.1
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 2.6e-69 266.5 328 54.3
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 4.5e-69 265.8 341 49.9
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 9.9e-69 264.6 334 51.8
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 9.9e-69 264.6 348 52.6
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 9.9e-69 264.6 309 53.7
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 2.7e-66 256.5 391 47.8
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 4.6e-66 255.8 329 52.0
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 4.6e-66 255.8 329 52.0
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 1.3e-65 254.2 340 49.4
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 1.8e-65 253.8 341 50.7
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 5.1e-65 252.3 342 51.8
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 6.7e-65 251.9 322 51.2
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 1.6e-63 247.3 364 47.5
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 2.1e-63 246.9 342 49.4
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 3.4e-61 239.6 328 50.0
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 4.5e-61 239.2 334 49.1
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 3.8e-60 236.1 343 49.6
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 8.4e-60 235.0 310 53.2
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 5.5e-59 232.3 334 49.1
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 1.2e-58 231.1 336 48.2
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 2.1e-58 230.3 335 47.2
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 3.5e-58 229.6 403 43.7
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 8.7e-57 224.9 370 43.2
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 2.5e-56 223.4 347 47.6
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 2.1e-55 220.3 323 47.7
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 3.1e-54 216.5 349 45.6
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 2.0e-53 213.8 314 47.5
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 2.0e-53 213.8 323 48.0
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 2.6e-53 213.4 324 46.0
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 4.5e-53 212.6 335 48.4
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 8.4e-52 208.4 344 45.1
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 2.5e-51 206.8 336 46.1
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 1.2e-50 204.5 311 44.7
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 3.5e-50 203.0 248 54.4
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 1.0e-49 201.4 339 45.7
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 7.4e-48 195.3 321 44.9
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 2.2e-47 193.7 280 52.5
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 1.8e-46 190.7 325 46.5
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 2.4e-46 190.3 331 45.3
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 2.6e-45 186.8 326 45.1
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 1.7e-44 184.1 321 43.9
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 3.8e-44 183.0 339 41.6
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 2.5e-43 180.3 290 46.9
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 4.2e-43 179.5 219 52.1
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 1.8e-41 174.1 341 39.6
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 2.3e-41 173.7 335 42.1
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 9.7e-40 168.3 330 43.0
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 4.8e-39 166.0 336 42.3
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 6.9e-38 162.2 346 40.2
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 1.3e-36 157.9 300 38.7
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 3.2e-35 153.3 333 42.3
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 7.2e-35 152.1 323 41.2
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 1.2e-34 151.4 311 40.2
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 1.6e-34 151.0 334 41.3
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 2.1e-34 150.6 329 41.9
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 4.7e-34 149.4 330 40.3
Atru.chr5.2357 Acer truncatum HOM05D006273 ORTHO05D007607 1.4e-33 147.9 263 44.9
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 1.4e-33 147.9 196 52.0
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 1.8e-33 147.5 327 39.8
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 3.0e-33 146.7 311 38.3
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 5.1e-33 146.0 337 40.1
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 1.1e-32 144.8 332 39.8
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 4.4e-32 142.9 246 41.1
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 1.3e-31 141.4 332 43.7
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 1.8e-30 137.5 332 41.9
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 3.1e-30 136.7 337 40.9
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 3.1e-30 136.7 333 42.0
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 5.3e-30 136.0 343 36.4
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 7.0e-30 135.6 337 39.5
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 9.1e-30 135.2 307 38.1
Aa31LG8G6430 Aethionema arabicum HOM05D006273 ORTHO05D007607 1.5e-29 134.4 313 40.3
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 1.3e-28 131.3 325 38.5
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 1.3e-28 131.3 171 50.3
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 2.2e-28 130.6 145 55.2
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 7.2e-27 125.6 208 44.2
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 3.6e-26 123.2 335 38.2
Zm00001eb007690 Zea mays HOM05D006273 ORTHO05D007607 3.9e-25 119.8 333 36.9
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 8.8e-25 118.6 197 42.6
Os03g0203000 Oryza sativa ssp. japonica HOM05D006273 ORTHO05D007607 8.2e-23 112.1 289 36.0
FvH4_2g03741 Fragaria vesca HOM05D006273 ORTHO05D007607 1.6e-18 97.8 119 53.8
Dinv15806 Davidia involucrata HOM05D006273 ORTHO05D007607 1.0e-17 95.1 71 76.1
AL3G33090 Arabidopsis lyrata HOM05D006273 ORTHO05D007607 1.5e-16 91.3 332 34.0
Oeu037282.1 Olea europaea HOM05D006273 ORTHO05D007607 2.6e-16 90.5 240 38.3
CDE04G2504 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 5.7e-16 89.4 314 34.1
Actinidia00372 Actinidia chinensis HOM05D006273 ORTHO05D007607 1.3e-15 88.2 105 55.2
SHI05153 Sapria himalayana HOM05D006273 ORTHO05D007607 1.7e-15 87.8 322 32.6
AUR62025214 Chenopodium quinoa HOM05D000052 ORTHO05D007607 6.3e-15 85.9 195 34.4
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 1.1e-14 85.1 300 32.3
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 2.4e-14 84.0 271 34.7
TPR.G8308 Trifolium pratense HOM05D006273 ORTHO05D007607 4.5e-13 79.7 253 33.2
Aqoxy6G02626 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 7.7e-13 79.0 248 33.1
Dinv15805 Davidia involucrata HOM05D006273 ORTHO05D007607 2.7e-10 70.5 126 43.7
MBI19_g46225_MAGBIO Magnolia biondii HOM05D006273 ORTHO05D015157 3.6e-10 70.1 84 52.4
Actinidia27988 Actinidia chinensis HOM05D006273 ORTHO05D007607 1.8e-09 67.8 48 77.1
SEGI_25142 Sequoiadendron giganteum HOM05D006273 ORTHO05D007607 1.8e-09 67.8 251 30.3


User provided reference genes

Program Settings