Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 4.4e-56 221.1 115 100.0
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 3.5e-53 211.5 117 95.7
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.8e-25 119.4 100 67.0
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 6.9e-25 117.5 100 66.0
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.2e-21 106.7 128 58.6
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 2.7e-21 105.5 94 70.2
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 2.3e-20 102.4 94 69.1
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.5e-19 99.8 86 66.3
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.5e-19 99.8 86 66.3
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 4.3e-19 98.2 84 69.0
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 1.3e-18 96.7 94 67.0
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 6.3e-18 94.4 93 64.5
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 8.2e-18 94.0 84 66.7
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 8.2e-18 94.0 93 69.9
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 1.4e-17 93.2 91 67.0
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 1.8e-17 92.8 84 64.3
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 3.1e-17 92.0 94 66.0
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 6.9e-17 90.9 93 65.6
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 9.0e-17 90.5 94 66.0
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 9.0e-17 90.5 94 63.8
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 1.5e-16 89.7 88 62.5
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.5e-16 89.7 93 59.1
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 1.5e-16 89.7 93 61.3
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 1.5e-16 89.7 85 62.4
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 2.0e-16 89.4 90 66.7
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 2.0e-16 89.4 95 61.1
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 2.0e-16 89.4 94 62.8
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 2.6e-16 89.0 92 64.1
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 2.6e-16 89.0 94 63.8
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 5.9e-16 87.8 85 60.0
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 5.9e-16 87.8 85 61.2
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 7.7e-16 87.4 94 61.7
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 1.0e-15 87.0 95 63.2
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 1.0e-15 87.0 95 63.2
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.3e-15 86.7 89 61.8
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 1.3e-15 86.7 88 64.8
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 2.2e-15 85.9 88 63.6
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 2.2e-15 85.9 95 61.1
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.2e-15 85.9 94 63.8
Glyma.20G130500 Glycine max HOM05D003477 ORTHO05D004043 2.9e-15 85.5 93 60.2
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 2.9e-15 85.5 89 60.7
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.8e-15 85.1 89 61.8
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 5.0e-15 84.7 88 63.6
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 6.5e-15 84.3 86 58.1
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 6.5e-15 84.3 91 58.2
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 8.5e-15 84.0 86 57.0
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 8.5e-15 84.0 94 57.4
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 8.5e-15 84.0 94 59.6
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.1e-14 83.6 94 62.8
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 1.1e-14 83.6 80 65.0
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 1.9e-14 82.8 85 63.5
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 1.9e-14 82.8 95 62.1
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 3.2e-14 82.0 93 61.3
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.2e-14 82.0 91 60.4
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 3.2e-14 82.0 82 58.5
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 3.2e-14 82.0 95 60.0
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 4.2e-14 81.6 88 58.0
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 5.5e-14 81.3 95 58.9
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 5.5e-14 81.3 86 60.5
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 5.5e-14 81.3 94 59.6
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 7.2e-14 80.9 91 61.5
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 7.2e-14 80.9 94 60.6
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 9.4e-14 80.5 98 57.1
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.2e-13 80.1 91 61.5
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.2e-13 80.1 90 61.1
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.6e-13 79.7 93 57.0
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 2.1e-13 79.3 95 56.8
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 2.1e-13 79.3 88 59.1
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 2.7e-13 79.0 93 60.2
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 2.7e-13 79.0 94 58.5
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.6e-13 78.2 91 57.1
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.6e-13 78.2 91 60.4
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 4.6e-13 78.2 88 60.2
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 6.1e-13 77.8 91 62.6
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 6.1e-13 77.8 91 59.3
Peaxi162Scf00152g00313 Petunia axillaris HOM05D003477 ORTHO05D004043 7.9e-13 77.4 109 48.6
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 1.0e-12 77.0 93 58.1
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 1.0e-12 77.0 91 57.1
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 1.4e-12 76.6 95 56.8
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 1.4e-12 76.6 93 58.1
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 1.4e-12 76.6 88 56.8
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 1.4e-12 76.6 89 58.4
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.8e-12 76.3 85 58.8
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 1.8e-12 76.3 104 51.0
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 2.3e-12 75.9 91 54.9
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 2.3e-12 75.9 96 56.2
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 2.3e-12 75.9 91 59.3
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 3.0e-12 75.5 94 55.3
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 3.0e-12 75.5 94 57.4
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 3.9e-12 75.1 88 56.8
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 8.8e-12 73.9 96 54.2
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 1.1e-11 73.6 96 56.2
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 1.1e-11 73.6 88 55.7
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 1.1e-11 73.6 88 55.7
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 1.1e-11 73.6 91 56.0
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 2.0e-11 72.8 95 56.8
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 5.7e-11 71.2 85 51.8
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 5.7e-11 71.2 85 51.8
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 7.4e-11 70.9 93 54.8
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 9.7e-11 70.5 92 54.3
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 1.3e-10 70.1 95 55.8
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 1.7e-10 69.7 97 50.5
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 2.8e-10 68.9 94 53.2
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 2.8e-10 68.9 88 53.4
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 3.7e-10 68.6 89 48.3
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 4.8e-10 68.2 74 55.4
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 4.8e-10 68.2 89 56.2
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 8.2e-10 67.4 91 49.5
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 8.2e-10 67.4 89 56.2
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 1.8e-09 66.2 91 51.6
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 2.4e-09 65.9 91 49.5
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 3.1e-09 65.5 92 48.9
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 4.1e-09 65.1 93 50.5
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 5.3e-09 64.7 95 51.6
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 5.3e-09 64.7 44 75.0
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 6.9e-09 64.3 50 64.0
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 6.9e-09 64.3 75 50.7
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 6.9e-09 64.3 61 59.0
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 6.9e-09 64.3 61 59.0
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 9.1e-09 63.9 91 50.5
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 9.1e-09 63.9 52 63.5
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 9.1e-09 63.9 94 51.1
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 9.1e-09 63.9 91 52.7
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 1.2e-08 63.5 50 64.0
DCAR_021977 Daucus carota HOM05D003477 ORTHO05D004043 1.2e-08 63.5 90 53.3
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 1.2e-08 63.5 50 64.0
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 1.5e-08 63.2 90 48.9
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 1.5e-08 63.2 90 48.9
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 1.5e-08 63.2 90 48.9
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.5e-08 63.2 94 51.1
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 2.0e-08 62.8 44 70.5
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 2.0e-08 62.8 92 48.9
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 2.0e-08 62.8 91 47.3
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.6e-08 62.4 50 66.0
HanXRQChr09g0251061 Helianthus annuus HOM05D003477 ORTHO05D004043 2.6e-08 62.4 84 52.4
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 3.4e-08 62.0 92 52.2
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 4.5e-08 61.6 84 51.2
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 5.9e-08 61.2 95 47.4
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 7.7e-08 60.8 95 49.5
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.0e-07 60.5 94 50.0
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.0e-07 60.5 94 50.0
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.3e-07 60.1 86 51.2
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 1.3e-07 60.1 96 47.9
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 1.7e-07 59.7 51 58.8
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 2.2e-07 59.3 44 68.2
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.9e-07 58.9 92 47.8
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 2.9e-07 58.9 50 60.0
SGA_v2.0_scaffold13G06619 Striga asiatica HOM05D003477 ORTHO05D004043 2.9e-07 58.9 126 36.5
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 5.0e-07 58.2 92 50.0
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 5.0e-07 58.2 101 47.5
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 6.5e-07 57.8 94 50.0
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.5e-07 57.8 94 47.9
MELO3C031999.2 Cucumis melo HOM05D003477 ORTHO05D013069 8.5e-07 57.4 37 70.3
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 8.5e-07 57.4 101 45.5
unitig_22.g5195 Utricularia gibba HOM05D003477 ORTHO05D004043 8.5e-07 57.4 94 51.1
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 1.4e-06 56.6 99 46.5
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.9e-06 56.2 42 66.7
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 2.5e-06 55.8 42 66.7
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.5e-06 55.8 99 47.5
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 4.2e-06 55.1 92 44.6
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.2e-06 55.1 99 46.5
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.2e-06 55.1 94 44.7
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 5.5e-06 54.7 98 48.0
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 5.5e-06 54.7 98 44.9
EL10Ac9g22255 Beta vulgaris HOM05D003477 ORTHO05D004043 7.2e-06 54.3 87 43.7
CiPaw.01G009400 Carya illinoinensis HOM05D003477 ORTHO05D004043 7.2e-06 54.3 97 49.5
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 7.2e-06 54.3 92 43.5
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 9.4e-06 53.9 94 44.7
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 9.4e-06 53.9 92 44.6


User provided reference genes

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