Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 7.9e-244 846.7 420 100.0
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.3e-233 812.8 438 93.2
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 3.9e-219 764.6 417 88.5
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 2.0e-218 762.3 419 89.5
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 3.3e-218 761.5 419 89.0
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.3e-217 759.6 418 86.6
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 4.8e-217 757.7 417 87.8
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 4.5e-215 751.1 418 85.9
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.9e-214 748.4 418 85.9
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 7.9e-212 740.3 417 86.1
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.0e-210 735.7 420 85.2
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.3e-209 733.0 420 84.5
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.8e-209 731.1 418 84.2
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 8.2e-209 730.3 416 83.9
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 8.2e-209 730.3 418 83.5
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 7.0e-208 727.2 420 83.8
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.2e-207 726.5 417 84.4
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.6e-207 725.3 420 84.3
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.6e-207 725.3 420 83.6
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 2.6e-207 725.3 414 84.3
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 3.5e-207 724.9 420 83.3
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 4.5e-207 724.5 420 82.9
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 5.9e-207 724.2 417 83.7
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-206 723.0 420 82.6
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.3e-206 723.0 420 84.8
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 2.9e-206 721.8 418 84.2
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 5.0e-206 721.1 420 82.4
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 5.0e-206 721.1 419 83.5
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 5.0e-206 721.1 414 84.3
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.5e-206 720.7 420 82.9
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 8.5e-206 720.3 417 83.9
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 8.5e-206 720.3 415 83.1
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 8.5e-206 720.3 420 82.6
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 8.5e-206 720.3 415 83.1
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.1e-205 719.9 442 79.9
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.9e-205 719.2 416 82.7
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.2e-204 716.5 420 82.9
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 2.1e-204 715.7 416 82.0
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 8.0e-204 713.8 416 82.0
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.0e-203 713.4 416 81.7
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.4e-203 713.0 418 83.5
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.8e-203 712.6 414 82.6
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 5.2e-203 711.1 418 82.3
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 8.8e-203 710.3 418 81.8
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.2e-202 709.9 416 81.7
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 2.6e-202 708.8 416 82.2
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 2.6e-202 708.8 418 83.0
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 4.4e-202 708.0 437 79.4
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 5.7e-202 707.6 437 80.5
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 7.5e-202 707.2 418 82.5
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 7.5e-202 707.2 415 82.4
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 1.3e-201 706.4 418 82.8
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 1.3e-201 706.4 418 82.8
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.7e-201 706.1 416 80.8
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 2.2e-201 705.7 414 81.4
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.7e-201 704.9 416 80.5
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.8e-200 702.6 419 80.7
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 4.1e-200 701.4 418 79.9
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 7.0e-200 700.7 418 80.4
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 9.1e-200 700.3 418 81.8
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 2.7e-199 698.7 418 79.7
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.7e-199 698.7 420 81.9
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.9e-199 697.6 431 79.1
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.0e-198 696.8 412 79.9
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.7e-198 696.0 417 80.3
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.2e-198 695.7 434 79.5
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.9e-198 695.3 434 79.7
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.0e-198 694.5 420 78.8
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 5.0e-198 694.5 414 80.2
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.1e-197 693.3 415 80.2
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.1e-197 693.3 416 79.6
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.1e-197 693.3 418 79.9
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 2.5e-197 692.2 416 79.8
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 7.2e-197 690.6 418 78.9
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 7.2e-197 690.6 434 79.3
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 9.4e-197 690.3 420 79.5
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 4.7e-196 688.0 418 78.7
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 1.4e-195 686.4 420 78.8
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 2.3e-195 685.6 420 77.9
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 8.8e-195 683.7 420 78.3
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.2e-194 683.3 416 78.1
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.2e-194 683.3 416 77.4
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.5e-194 682.9 419 78.0
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 2.0e-194 682.6 416 78.1
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 2.6e-194 682.2 416 78.1
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 2.6e-194 682.2 420 79.3
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 3.4e-194 681.8 415 79.3
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 7.5e-194 680.6 416 76.7
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.7e-193 679.5 415 77.6
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.2e-193 679.1 420 77.9
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 2.8e-193 678.7 453 73.5
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 2.8e-193 678.7 416 77.6
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 2.8e-193 678.7 416 78.8
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 2.8e-193 678.7 417 77.9
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 3.7e-193 678.3 416 77.9
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.7e-193 678.3 420 79.0
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 6.3e-193 677.6 420 77.1
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 5.4e-192 674.5 418 77.8
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 3.5e-191 671.8 416 76.7
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.9e-191 671.0 419 77.1
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 2.2e-190 669.1 416 77.2
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 3.8e-190 668.3 417 76.7
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.0e-190 667.9 419 77.3
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 1.1e-189 666.8 411 77.4
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.5e-189 665.6 420 79.0
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.2e-188 663.3 419 76.4
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.6e-188 662.9 420 76.9
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 2.8e-188 662.1 416 76.9
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 3.6e-188 661.8 416 77.2
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 6.1e-188 661.0 409 79.5
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 6.1e-188 661.0 418 78.5
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.4e-187 659.8 412 77.2
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 6.8e-187 657.5 410 74.9
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.6e-186 655.6 368 86.1
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.4e-184 649.8 457 69.4
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 7.0e-184 647.5 421 75.1
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 9.2e-184 647.1 413 75.1
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 5.9e-183 644.4 415 73.7
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.3e-182 643.3 411 73.5
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 3.8e-182 641.7 412 73.8
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 6.6e-182 641.0 417 73.1
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.1e-181 640.2 419 74.5
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.1e-181 640.2 420 75.2
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.5e-181 639.8 420 74.8
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.4e-179 633.3 420 71.4
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 4.4e-178 628.2 370 80.3
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 5.7e-178 627.9 502 62.7
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 6.4e-177 624.4 421 70.3
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.2e-176 622.1 411 73.2
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.6e-172 609.8 363 79.9
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.7e-172 608.2 413 70.7
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 8.0e-172 607.4 360 79.7
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 5.0e-166 588.2 341 82.4
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 6.6e-166 587.8 341 81.8
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 2.8e-164 582.4 416 70.4
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 8.6e-158 560.8 437 68.0
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 2.5e-157 559.3 413 64.6
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 9.2e-152 540.8 415 61.2
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 2.7e-151 539.3 410 63.2
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 7.3e-149 531.2 417 63.8
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 9.6e-149 530.8 411 60.8
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.2e-143 513.8 301 84.4
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.8e-134 483.4 302 82.8
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.5e-133 479.6 345 68.1
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 9.6e-133 477.6 427 55.7
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.6e-130 468.0 312 74.4
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 3.7e-116 422.5 223 90.1
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 5.3e-107 392.1 282 68.1
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 2.0e-106 390.2 235 79.1
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 3.8e-105 386.0 419 47.5
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 9.4e-104 381.3 498 41.2
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 2.6e-101 373.2 406 47.3
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.3e-100 370.9 428 46.3
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.3e-100 368.6 198 85.9
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.6e-98 363.2 198 84.3
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 4.7e-95 352.4 246 69.9
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 6.1e-79 298.9 223 68.2
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 5.7e-77 292.4 226 67.7
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.5e-72 277.7 258 57.8
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 4.1e-67 259.6 178 70.8
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.9e-64 250.8 162 75.3
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.1e-63 247.3 178 70.8
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 2.1e-63 247.3 155 75.5
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 3.4e-61 240.0 129 90.7
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.9e-59 234.2 151 76.2
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 1.5e-56 224.6 229 52.8
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 9.8e-53 211.8 121 76.9
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.9e-52 210.3 339 39.5
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.9e-52 210.3 180 61.1
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.4e-51 206.1 119 80.7
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.3e-49 201.4 127 78.0
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.3e-49 200.7 345 39.4
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 9.5e-40 168.7 122 64.8
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 1.2e-34 151.8 95 75.8
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.1e-30 138.7 128 57.8
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 6.9e-30 136.0 88 75.0
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 5.4e-27 126.3 75 76.0
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.7e-25 121.3 71 81.7
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 3.9e-17 93.6 87 49.4
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 5.6e-16 89.7 104 46.2
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.6e-15 88.2 57 68.4
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.8e-12 77.0 59 67.8
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.1e-08 65.5 35 82.9
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 2.1e-07 61.2 133 30.1
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 1.8e-06 58.2 50 54.0


User provided reference genes

Program Settings