Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 8.2e-185 650.2 319 100.0
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 3.7e-161 571.6 301 93.4
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.9e-145 518.8 301 82.4
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 6.4e-145 517.7 298 82.9
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 3.2e-144 515.4 298 83.2
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 4.1e-144 515.0 301 84.4
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.3e-142 510.0 301 82.1
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.3e-142 509.2 301 81.7
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.3e-142 509.2 291 84.5
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 3.9e-142 508.4 305 82.0
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 5.0e-142 508.1 301 82.1
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.1e-141 506.9 301 81.4
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.1e-141 506.9 301 80.7
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 1.9e-141 506.1 301 80.4
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 2.5e-141 505.8 301 79.7
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 3.3e-141 505.4 301 81.1
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.3e-141 505.0 301 81.4
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.6e-141 504.6 301 81.1
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 5.6e-141 504.6 301 80.7
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 5.6e-141 504.6 291 82.5
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.6e-140 503.1 321 79.1
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.6e-140 503.1 298 80.9
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.8e-140 502.3 301 80.1
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 4.7e-140 501.5 301 79.4
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 4.7e-140 501.5 301 80.4
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 6.2e-140 501.1 301 79.4
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 6.2e-140 501.1 301 79.7
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 3.1e-139 498.8 301 79.7
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 5.2e-139 498.0 301 78.7
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 5.2e-139 498.0 291 82.5
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 8.9e-139 497.3 301 78.7
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 8.9e-139 497.3 301 78.7
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.6e-138 495.7 291 81.1
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.4e-138 495.0 301 78.7
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 4.4e-138 495.0 301 78.7
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 4.4e-138 495.0 291 81.8
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.4e-138 495.0 301 79.1
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 5.8e-138 494.6 301 78.4
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 5.8e-138 494.6 301 79.1
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 7.5e-138 494.2 301 79.1
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 7.5e-138 494.2 301 78.7
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.3e-137 493.4 301 79.1
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.7e-137 493.0 291 81.4
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 2.2e-137 492.7 298 79.5
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 2.2e-137 492.7 301 79.1
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 2.2e-137 492.7 291 81.8
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 4.9e-137 491.5 291 81.1
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 3.2e-136 488.8 301 77.1
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 4.1e-136 488.4 301 78.1
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 5.4e-136 488.0 301 78.1
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 5.4e-136 488.0 298 78.9
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 5.4e-136 488.0 291 80.4
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 7.1e-136 487.6 302 76.5
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 7.1e-136 487.6 301 77.4
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 7.1e-136 487.6 300 77.7
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 1.6e-135 486.5 301 78.1
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 3.5e-135 485.3 299 76.3
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 6.0e-135 484.6 301 77.1
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 6.0e-135 484.6 299 77.3
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.3e-134 482.6 300 77.3
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.3e-134 482.6 301 76.7
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.3e-134 482.6 307 76.9
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 3.0e-134 482.3 304 75.3
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 6.6e-134 481.1 291 80.4
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.6e-134 481.1 307 76.5
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 6.6e-134 481.1 293 77.1
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 8.6e-134 480.7 301 76.7
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 1.1e-133 480.3 301 75.4
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.9e-133 479.6 302 74.8
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.9e-133 479.6 301 76.4
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 2.5e-133 479.2 291 79.4
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 5.6e-133 478.0 301 76.4
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 5.6e-133 478.0 291 76.6
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 7.3e-133 477.6 307 75.9
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.2e-132 476.9 291 78.7
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 2.1e-132 476.1 296 78.0
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 2.1e-132 476.1 291 78.7
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.8e-132 475.7 301 75.1
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 2.8e-132 475.7 289 79.6
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.8e-132 475.7 305 76.4
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 3.6e-132 475.3 291 79.0
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 3.6e-132 475.3 318 73.0
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.6e-132 475.3 301 75.7
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.2e-132 474.6 298 78.2
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.1e-131 473.8 298 77.2
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.4e-131 473.4 301 75.1
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 3.1e-131 472.2 300 76.0
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 1.2e-130 470.3 291 76.3
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 1.5e-130 469.9 301 73.8
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.5e-130 469.9 300 75.7
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 2.0e-130 469.5 301 74.1
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 2.6e-130 469.2 301 73.8
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.6e-130 469.2 301 74.1
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 3.4e-130 468.8 301 73.4
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 4.4e-130 468.4 301 73.8
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 5.8e-130 468.0 302 70.9
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 7.6e-130 467.6 301 73.8
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 9.9e-130 467.2 299 72.2
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.3e-129 466.8 291 76.6
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 3.7e-129 465.3 303 73.9
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 4.9e-129 464.9 301 73.1
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 8.3e-129 464.2 302 74.5
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 8.3e-129 464.2 334 68.3
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.1e-128 463.8 300 75.0
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.4e-128 462.6 301 72.1
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 2.4e-128 462.6 302 73.8
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 4.1e-128 461.8 301 73.4
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 7.1e-128 461.1 302 72.8
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.2e-127 460.3 291 74.9
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 1.6e-127 459.9 302 71.9
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 2.7e-127 459.1 302 72.5
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 7.8e-127 457.6 297 75.1
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 6.6e-126 454.5 285 73.3
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.9e-125 453.0 291 72.2
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 3.3e-125 452.2 306 71.9
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 9.6e-125 450.7 290 75.5
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.2e-124 450.3 296 71.3
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.8e-124 449.1 299 72.2
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 2.8e-124 449.1 298 70.1
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.1e-123 447.2 301 73.1
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 1.8e-123 446.4 304 69.4
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 3.1e-123 445.7 330 65.2
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.2e-123 444.9 282 75.5
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 2.0e-122 443.0 301 71.8
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 2.6e-122 442.6 305 71.1
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.7e-121 439.9 291 74.2
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.2e-121 439.5 297 70.4
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.2e-120 435.6 301 73.1
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 4.2e-120 435.3 301 72.4
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 2.1e-119 433.0 318 65.7
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 2.7e-119 432.6 299 69.2
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.4e-114 415.2 248 79.8
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 7.1e-112 407.9 296 63.9
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.1e-109 400.6 288 68.1
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 5.6e-109 398.3 223 85.2
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 7.3e-109 397.9 254 73.6
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 5.8e-106 388.3 244 75.8
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.8e-102 376.7 288 60.8
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.1e-101 374.0 285 62.5
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 2.4e-99 366.3 226 76.5
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 9.0e-99 364.4 226 78.3
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 4.5e-98 362.1 305 62.6
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 4.9e-97 358.6 300 57.3
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 6.5e-97 358.2 280 59.6
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 4.6e-95 352.1 244 69.7
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.6e-92 343.6 234 71.4
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 3.4e-90 335.9 298 57.0
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 5.0e-81 305.4 277 52.3
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 4.2e-80 302.4 300 50.0
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 2.3e-78 296.6 178 82.6
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.7e-76 289.3 177 76.3
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 9.1e-75 284.6 288 48.6
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.7e-71 273.1 281 49.1
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 7.9e-71 271.6 217 66.4
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.5e-64 250.8 160 75.0
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 2.7e-63 246.5 173 69.4
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.7e-58 229.9 148 75.7
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 2.3e-54 216.9 230 51.7
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.2e-52 210.3 126 81.7
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.1e-51 208.0 181 58.6
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.8e-51 207.2 126 80.2
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.2e-48 196.4 119 77.3
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 4.7e-39 166.0 95 81.1
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.6e-31 141.0 193 44.6
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.4e-27 127.1 101 60.4
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 1.2e-26 124.8 66 80.3
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.2e-23 114.8 102 58.8
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.6e-23 114.4 67 80.6
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 2.6e-21 107.1 70 74.3
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 8.3e-20 102.1 71 71.8
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.3e-17 94.7 49 85.7
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 3.0e-17 93.6 57 77.2
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 4.4e-13 79.7 49 71.4
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.4e-11 73.9 59 67.8
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.5e-08 64.7 35 77.1
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 2.1e-07 60.8 50 56.0
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 8.1e-07 58.9 72 36.1


User provided reference genes

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