Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004563 Carpinus fangiana HOM05D000138 ORTHO05D000078 1.5e-68 262.7 133 100.0
Cfa004042 Carpinus fangiana HOM05D000138 ORTHO05D000078 2.2e-51 205.7 121 83.5
Cfa010994 Carpinus fangiana HOM05D000138 ORTHO05D000078 2.5e-50 202.2 111 90.1
Haze_15371 Corylus avellana HOM05D000138 ORTHO05D000078 4.4e-47 191.4 121 80.2
QL06p040660 Quercus lobata HOM05D000138 ORTHO05D000078 4.2e-34 148.3 125 62.4
CiPaw.02G007200 Carya illinoinensis HOM05D000138 ORTHO05D000078 3.5e-28 128.6 123 58.5
CiPaw.01G015100 Carya illinoinensis HOM05D000138 ORTHO05D000078 4.5e-28 128.3 123 57.7
Manes.12G106400 Manihot esculenta HOM05D000138 ORTHO05D000078 8.5e-27 124.0 126 54.8
FAN28G1244 Fragaria x ananassa HOM05D000138 ORTHO05D000078 2.1e-25 119.4 123 56.1
Duzib147G0747 Durio zibethinus HOM05D000138 ORTHO05D000078 2.7e-25 119.0 126 50.8
FAN23G1671 Fragaria x ananassa HOM05D000138 ORTHO05D000078 2.7e-25 119.0 125 55.2
RcHm_v2.0_Chr2g0106221 Rosa chinensis HOM05D000138 ORTHO05D000078 6.1e-25 117.9 123 54.5
FAN26G2578 Fragaria x ananassa HOM05D000138 ORTHO05D000078 6.8e-24 114.4 123 53.7
Duzib264G0574 Durio zibethinus HOM05D000138 ORTHO05D000078 1.5e-23 113.2 127 50.4
FvH4_1g16350 Fragaria vesca HOM05D000138 ORTHO05D000078 2.6e-23 112.5 122 56.6
Manes.13G120700 Manihot esculenta HOM05D000138 ORTHO05D000078 3.4e-23 112.1 126 54.8
Potri.007G046200 Populus trichocarpa HOM05D000138 ORTHO05D000078 3.4e-23 112.1 137 51.1
Sabra07G0041300 Salix brachista HOM05D000138 ORTHO05D000078 3.4e-23 112.1 134 53.0
FAN19G1915 Fragaria x ananassa HOM05D000138 ORTHO05D000078 1.7e-22 109.8 122 55.7
CANSAT01G1991 Cannabis sativa HOM05D000138 ORTHO05D000078 1.8e-21 106.3 138 47.1
Potri.005G140700 Populus trichocarpa HOM05D000138 ORTHO05D000078 1.8e-21 106.3 136 52.2
Cc07_g06200 Coffea canephora HOM05D000138 ORTHO05D000078 5.4e-21 104.8 133 49.6
Dinv26845 Davidia involucrata HOM05D000138 ORTHO05D000078 7.0e-21 104.4 110 54.5
Ciclev10025364m.g Citrus clementina HOM05D000138 ORTHO05D000078 1.2e-20 103.6 125 49.6
Gohir.A12G072900 Gossypium hirsutum HOM05D000138 ORTHO05D000078 1.6e-20 103.2 131 47.3
Thecc.01G060400 Theobroma cacao HOM05D000138 ORTHO05D000078 1.6e-20 103.2 127 48.8
Gohir.D12G070800 Gossypium hirsutum HOM05D000138 ORTHO05D000078 3.5e-20 102.1 133 48.1
TWI09G1505 Tripterygium wilfordii HOM05D000138 ORTHO05D000078 3.5e-20 102.1 130 47.7
Gorai.008G077800 Gossypium raimondii HOM05D000138 ORTHO05D000078 5.9e-20 101.3 135 47.4
Sabra05G0110600 Salix brachista HOM05D000138 ORTHO05D000078 2.3e-19 99.4 132 47.7
PGSC0003DMG400004006 Solanum tuberosum HOM05D000138 ORTHO05D000078 8.6e-19 97.4 112 48.2
Nn5g30360 Nelumbo nucifera HOM05D000138 ORTHO05D000078 5.5e-18 94.7 128 41.4
VMungo1215G1443 Vigna mungo HOM05D000138 ORTHO05D000078 5.5e-18 94.7 115 46.1
Nitab4.5_0001603g0010 Nicotiana tabacum HOM05D000138 ORTHO05D000078 9.5e-18 94.0 122 48.4
Lj2g0023594 Lotus japonicus HOM05D000138 ORTHO05D000078 2.1e-17 92.8 118 51.7
Sopen02g037720 Solanum pennellii HOM05D000138 ORTHO05D000078 2.8e-17 92.4 112 47.3
Hma1.2p1_0670F.1_g200420 Hydrangea macrophylla HOM05D000138 ORTHO05D000078 4.7e-17 91.7 110 50.9
Lalb_Chr09g0323291 Lupinus albus HOM05D000138 ORTHO05D000078 6.1e-17 91.3 125 48.0
Solyc02g093150.3 Solanum lycopersicum HOM05D000138 ORTHO05D000078 6.1e-17 91.3 112 46.4
COL.COLO4_11450 Corchorus olitorius HOM05D000138 ORTHO05D000078 1.8e-16 89.7 127 42.5
Gorai.007G215900 Gossypium raimondii HOM05D000138 ORTHO05D000078 3.0e-16 89.0 127 42.5
Gohir.A11G195300 Gossypium hirsutum HOM05D000138 ORTHO05D000078 6.8e-16 87.8 127 42.5
Nitab4.5_0001221g0060 Nicotiana tabacum HOM05D000138 ORTHO05D000078 6.8e-16 87.8 122 46.7
SHI08773 Sapria himalayana HOM05D000138 ORTHO05D000078 6.8e-16 87.8 130 46.2
ECA232G3195 Erigeron canadensis HOM05D000138 ORTHO05D000078 8.9e-16 87.4 113 42.5
TAR381G1030 Trochodendron aralioides HOM05D000138 ORTHO05D000078 8.9e-16 87.4 126 42.9
Gohir.D11G201500 Gossypium hirsutum HOM05D000138 ORTHO05D000078 1.2e-15 87.0 127 41.7
Duzib187G0622 Durio zibethinus HOM05D000138 ORTHO05D000078 2.0e-15 86.3 126 43.7
CsaV3_2G016390 Cucumis sativus L. HOM05D000138 ORTHO05D000078 4.4e-15 85.1 120 45.8
Nn1g04782 Nelumbo nucifera HOM05D000138 ORTHO05D000078 9.8e-15 84.0 127 41.7
TAR376G0226 Trochodendron aralioides HOM05D000138 ORTHO05D000078 9.8e-15 84.0 124 44.4
MELO3C020848.2 Cucumis melo HOM05D000138 ORTHO05D000078 1.7e-14 83.2 120 45.0
Phvul.002G016900 Phaseolus vulgaris HOM05D000138 ORTHO05D000078 1.7e-14 83.2 117 43.6
Cpa.g.sc55.116 Carica papaya HOM05D000138 ORTHO05D000078 2.2e-14 82.8 129 42.6
Lsat_1_v5_gn_2_85920 Lactuca sativa HOM05D000138 ORTHO05D000078 2.2e-14 82.8 110 45.5
MSTRG.3435 Avicennia marina HOM05D000138 ORTHO05D000078 2.8e-14 82.4 113 43.4
Psat2g168720 Pisum sativum HOM05D000138 ORTHO05D000078 2.8e-14 82.4 124 40.3
Oeu007928.1 Olea europaea HOM05D000138 ORTHO05D000078 3.7e-14 82.0 125 42.4
Ca_22148_v3 Cicer arietinum L. HOM05D000138 ORTHO05D000078 4.9e-14 81.6 124 44.4
Phvul.003G241900 Phaseolus vulgaris HOM05D000138 ORTHO05D000078 4.9e-14 81.6 132 40.9
ClCG02G012240 Citrullus lanatus HOM05D000138 ORTHO05D000078 8.3e-14 80.9 122 42.6
THA.LOC104819850 Tarenaya hassleriana HOM05D000138 ORTHO05D000078 1.1e-13 80.5 128 39.8
Nitab4.5_0000604g0120 Nicotiana tabacum HOM05D000138 ORTHO05D000078 2.4e-13 79.3 132 43.2
Peaxi162Scf00549g00114 Petunia axillaris HOM05D000138 ORTHO05D000078 2.4e-13 79.3 117 44.4
TPR.G26889 Trifolium pratense HOM05D000138 ORTHO05D000078 3.2e-13 79.0 131 45.0
TAR628G1675 Trochodendron aralioides HOM05D000138 ORTHO05D000078 4.1e-13 78.6 125 42.4
Lsat_1_v5_gn_3_89681 Lactuca sativa HOM05D000138 ORTHO05D000078 5.4e-13 78.2 89 47.2
Glyma.17G170300 Glycine max HOM05D000138 ORTHO05D000078 7.0e-13 77.8 141 39.7
Gorai.011G106200 Gossypium raimondii HOM05D000138 ORTHO05D000078 7.0e-13 77.8 123 41.5
VMungo0251G1370 Vigna mungo HOM05D000138 ORTHO05D000078 7.0e-13 77.8 132 40.9
Gohir.D10G096900 Gossypium hirsutum HOM05D000138 ORTHO05D000078 9.2e-13 77.4 123 41.5
CAN.G370.36 Capsicum annuum HOM05D000138 ORTHO05D000078 1.6e-12 76.6 123 39.8
Lj4A153T14 Lonicera japonica HOM05D000138 ORTHO05D000078 1.6e-12 76.6 124 44.4
vmacro05312 Vaccinium macrocarpon HOM05D000138 ORTHO05D000078 2.0e-12 76.3 124 38.7
Gohir.A10G091300 Gossypium hirsutum HOM05D000138 ORTHO05D000078 2.7e-12 75.9 123 42.3
TWI73G0321 Tripterygium wilfordii HOM05D000138 ORTHO05D000078 2.7e-12 75.9 129 41.1
Glyma.01G188400 Glycine max HOM05D000138 ORTHO05D000078 3.5e-12 75.5 115 40.0
CAN.G165.8 Capsicum annuum HOM05D000138 ORTHO05D000078 1.7e-11 73.2 130 43.8
Glyma.05G091200 Glycine max HOM05D000138 ORTHO05D000078 1.7e-11 73.2 88 48.9
Oeu009819.2 Olea europaea HOM05D000138 ORTHO05D000078 2.3e-11 72.8 118 39.8
Aqoxy6G01255 Aquilegia oxysepala HOM05D000138 ORTHO05D000078 2.9e-11 72.4 108 45.4
MSTRG.2869 Avicennia marina HOM05D000138 ORTHO05D000078 5.0e-11 71.6 106 44.3
Phvul.008G185400 Phaseolus vulgaris HOM05D000138 ORTHO05D000078 6.6e-11 71.2 116 40.5
THA.LOC104807594 Tarenaya hassleriana HOM05D000138 ORTHO05D000078 6.6e-11 71.2 127 40.2
GSVIVG01022081001 Vitis vinifera HOM05D000138 ORTHO05D000078 8.6e-11 70.9 82 50.0
Psat4g085680 Pisum sativum HOM05D000138 ORTHO05D000078 1.1e-10 70.5 134 32.8
Actinidia12034 Actinidia chinensis HOM05D000138 ORTHO05D000078 1.5e-10 70.1 111 43.2
Medtr4g094868 Medicago truncatula HOM05D000138 ORTHO05D000078 1.5e-10 70.1 131 38.9
Atru.chr3.283 Acer truncatum HOM05D000138 ORTHO05D000078 1.9e-10 69.7 134 42.5
Atru.chr3.289 Acer truncatum HOM05D000138 ORTHO05D000078 1.9e-10 69.7 134 42.5
Aa31LG6G14060 Aethionema arabicum HOM05D000138 ORTHO05D000078 1.9e-10 69.7 107 39.3
Ca_24752_v3 Cicer arietinum L. HOM05D000138 ORTHO05D000078 1.9e-10 69.7 125 44.8
Glyma.11G053800 Glycine max HOM05D000138 ORTHO05D000078 1.9e-10 69.7 115 41.7
Sopen02g015090 Solanum pennellii HOM05D000138 ORTHO05D000078 2.5e-10 69.3 131 40.5
TPR.G14585 Trifolium pratense HOM05D000138 ORTHO05D000078 3.3e-10 68.9 145 33.8
Lalb_Chr16g0388731 Lupinus albus HOM05D000138 ORTHO05D000078 4.3e-10 68.6 85 43.5
DCAR_025748 Daucus carota HOM05D000138 ORTHO05D000078 5.6e-10 68.2 109 37.6
HanXRQChr01g0002591 Helianthus annuus HOM05D000138 ORTHO05D000078 5.6e-10 68.2 116 41.4
PSO170G4970 Papaver somniferum HOM05D000138 ORTHO05D000078 5.6e-10 68.2 125 44.0
SGA_v2.0_scaffold15G07336 Striga asiatica HOM05D000138 ORTHO05D000078 5.6e-10 68.2 129 41.9
MSTRG.15380 Avicennia marina HOM05D000138 ORTHO05D000078 7.3e-10 67.8 112 42.9
Solyc02g064960.3 Solanum lycopersicum HOM05D000138 ORTHO05D000078 7.3e-10 67.8 131 38.9
ECA246G0179 Erigeron canadensis HOM05D000138 ORTHO05D000078 9.5e-10 67.4 116 40.5
Hma1.2p1_0017F.1_g011565 Hydrangea macrophylla HOM05D000138 ORTHO05D000078 9.5e-10 67.4 130 42.3
Peaxi162Scf02748g00006 Petunia axillaris HOM05D000138 ORTHO05D000078 9.5e-10 67.4 141 36.9
Oeu014819.1 Olea europaea HOM05D000138 ORTHO05D000078 1.2e-09 67.0 84 52.4
Prupe.6G231700 Prunus persica HOM05D000138 ORTHO05D000078 1.2e-09 67.0 133 39.8
BcaNung02963 Brassica carinata HOM05D000138 ORTHO05D000078 1.6e-09 66.6 108 43.5
PSO210G5819 Papaver somniferum HOM05D000138 ORTHO05D000078 1.6e-09 66.6 125 41.6
Gohir.A02G156300 Gossypium hirsutum HOM05D000138 ORTHO05D000078 3.6e-09 65.5 116 38.8
Gohir.D03G024400 Gossypium hirsutum HOM05D000138 ORTHO05D000078 3.6e-09 65.5 116 38.8
Gorai.003G025900 Gossypium raimondii HOM05D000138 ORTHO05D000078 3.6e-09 65.5 116 38.8
Dinv30012 Davidia involucrata HOM05D000138 ORTHO05D000078 4.7e-09 65.1 79 49.4
Medtr5g016810 Medicago truncatula HOM05D000138 ORTHO05D000078 4.7e-09 65.1 121 41.3
DCAR_010874 Daucus carota HOM05D000138 ORTHO05D000078 6.1e-09 64.7 130 40.0
Lj4g0007275 Lotus japonicus HOM05D000138 ORTHO05D000078 8.0e-09 64.3 134 41.0
Rhsim10G0114500 Rhododendron simsii HOM05D000138 ORTHO05D000078 1.0e-08 63.9 65 50.8
SGA_v2.0_scaffold143G35804 Striga asiatica HOM05D000138 ORTHO05D000078 1.4e-08 63.5 99 42.4
HanXRQChr01g0030351 Helianthus annuus HOM05D000138 ORTHO05D000078 3.1e-08 62.4 111 38.7
SalBow5G1433 Salvia bowleyana HOM05D000138 ORTHO05D000078 3.1e-08 62.4 113 38.1
unitig_748.g8399 Utricularia gibba HOM05D000138 ORTHO05D000078 3.1e-08 62.4 117 41.0
HanXRQChr12g0372611 Helianthus annuus HOM05D000138 ORTHO05D000078 5.2e-08 61.6 106 37.7
MD15G1286400 Malus domestica HOM05D000138 ORTHO05D000078 5.2e-08 61.6 137 38.0
Actinidia36473 Actinidia chinensis HOM05D000138 ORTHO05D000078 8.9e-08 60.8 112 36.6
BcaNung02525 Brassica carinata HOM05D000138 ORTHO05D000078 1.2e-07 60.5 107 39.3
Nitab4.5_0000333g0080 Nicotiana tabacum HOM05D000138 ORTHO05D000078 1.2e-07 60.5 108 40.7
PGSC0003DMG400025479 Solanum tuberosum HOM05D000138 ORTHO05D000078 1.2e-07 60.5 130 38.5
Thhalv10025268m.g Eutrema salsugineum HOM05D000138 ORTHO05D000078 1.5e-07 60.1 107 45.8
Sed0009625 Sechium edule HOM05D000138 ORTHO05D000078 2.6e-07 59.3 125 35.2
CSS0018330 Camellia sinensis var. sinensis HOM05D000138 ORTHO05D000078 3.4e-07 58.9 102 41.2
Rhsim08G0099000 Rhododendron simsii HOM05D000138 ORTHO05D000078 5.8e-07 58.2 115 35.7
Sed0014642 Sechium edule HOM05D000138 ORTHO05D000078 5.8e-07 58.2 113 36.3
arahy.Tifrunner.gnm1.ann1.00XS3D Arachis hypogaea HOM05D000138 ORTHO05D000078 7.5e-07 57.8 78 50.0
C01p01930 Brassica napus HOM05D000138 ORTHO05D000078 9.8e-07 57.4 107 39.3
BolC1t00186H Brassica oleracea HOM05D000138 ORTHO05D000078 9.8e-07 57.4 107 39.3
BraA01t00169Z Brassica rapa HOM05D000138 ORTHO05D000078 9.8e-07 57.4 107 39.3
Sopen03g008400 Solanum pennellii HOM05D000138 ORTHO05D000078 9.8e-07 57.4 107 37.4
arahy.Tifrunner.gnm1.ann1.4G06NJ Arachis hypogaea HOM05D000138 ORTHO05D000078 1.3e-06 57.0 78 50.0
Nitab4.5_0002263g0090 Nicotiana tabacum HOM05D000138 ORTHO05D000078 1.7e-06 56.6 133 36.1
AT4G36920 Arabidopsis thaliana HOM05D000138 ORTHO05D000078 2.2e-06 56.2 112 38.4
MD02G1176000 Malus domestica HOM05D000138 ORTHO05D000078 2.2e-06 56.2 134 35.8
Actinidia16472 Actinidia chinensis HOM05D000138 ORTHO05D000078 6.4e-06 54.7 121 34.7
PGSC0003DMG400006482 Solanum tuberosum HOM05D000138 ORTHO05D000078 6.4e-06 54.7 65 44.6
vmacro17963 Vaccinium macrocarpon HOM05D000138 ORTHO05D000078 8.3e-06 54.3 106 34.9


User provided reference genes

Program Settings