Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004498 Carpinus fangiana HOM05D000001 ORTHO05D123019 8.6e-78 293.5 141 100.0
Cfa007617 Carpinus fangiana HOM05D000001 ORTHO05D000003 5.3e-35 151.4 159 54.1
CiPaw.03G092100 Carya illinoinensis HOM05D000001 ORTHO05D000003 2.5e-32 142.5 156 52.6
Lju41A8T109 Lonicera japonica HOM05D000001 ORTHO05D000003 2.9e-25 119.0 158 43.0
Actinidia01971 Actinidia chinensis HOM05D000001 ORTHO05D000003 6.5e-25 117.9 155 43.9
Manes.01G099600 Manihot esculenta HOM05D000001 ORTHO05D000003 4.2e-24 115.2 162 43.2
Nn4g23322 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.2e-23 113.6 166 42.8
RcHm_v2.0_Chr1g0327501 Rosa chinensis HOM05D000001 ORTHO05D000003 3.6e-23 112.1 169 42.6
Prupe.3G260400 Prunus persica HOM05D000001 ORTHO05D000003 4.6e-23 111.7 169 43.2
Cc07_g03800 Coffea canephora HOM05D000001 ORTHO05D000003 1.4e-22 110.2 162 38.3
Atru.chr4.2783 Acer truncatum HOM05D000001 ORTHO05D000003 9.7e-21 104.0 153 41.8
COL.COLO4_12252 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.7e-20 103.2 163 40.5
Duzib147G1399 Durio zibethinus HOM05D000001 ORTHO05D000003 1.7e-20 103.2 150 42.7
Lsat_1_v5_gn_2_88061 Lactuca sativa HOM05D000001 ORTHO05D000003 3.1e-19 99.0 160 37.5
Thecc.04G089500 Theobroma cacao HOM05D000001 ORTHO05D000003 3.1e-19 99.0 150 44.0
SalBow1G3383 Salvia bowleyana HOM05D000001 ORTHO05D000003 5.0e-17 91.7 162 34.6
Oeu022756.1 Olea europaea HOM05D000001 ORTHO05D000003 2.5e-16 89.4 154 35.1
Gorai.012G050900 Gossypium raimondii HOM05D000001 ORTHO05D000003 7.2e-16 87.8 154 37.7
HanXRQChr14g0448651 Helianthus annuus HOM05D000001 ORTHO05D000003 6.1e-15 84.7 156 36.5
Migut.H00663 Erythranthe guttata HOM05D000001 ORTHO05D000003 3.0e-14 82.4 152 34.9
PSO063G5191 Papaver somniferum HOM05D000001 ORTHO05D026974 8.8e-14 80.9 153 36.6
PSO409G0031 Papaver somniferum HOM05D000001 ORTHO05D000003 8.8e-14 80.9 153 36.6
Os01g0357800 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 1.3e-12 77.0 153 33.3
Lalb_Chr03g0037541 Lupinus albus HOM05D000001 ORTHO05D000003 6.3e-12 74.7 131 37.4
PSO339G1088 Papaver somniferum HOM05D000001 ORTHO05D026974 1.8e-11 73.2 161 33.5
Zm00001eb020380 Zea mays HOM05D000001 ORTHO05D000003 1.8e-11 73.2 153 28.8
TAR369G1155 Trochodendron aralioides HOM05D000001 ORTHO05D026974 9.1e-11 70.9 62 56.5
PSO384G0959 Papaver somniferum HOM05D000001 ORTHO05D000003 5.9e-10 68.2 161 31.7
DCAR_011066 Daucus carota HOM05D003516 ORTHO05D004068 7.7e-10 67.8 56 62.5
Ca_05178_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.0e-09 67.4 61 57.4
CANSAT56G1110 Cannabis sativa HOM05D000001 ORTHO05D000003 2.9e-09 65.9 120 30.8
FAN21G1787 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.5e-09 64.3 74 48.6
Cpa.g.sc14.135 Carica papaya HOM05D000001 ORTHO05D000003 4.2e-08 62.0 53 56.6
FvH4_3g28380 Fragaria vesca HOM05D000001 ORTHO05D000003 7.2e-08 61.2 74 45.9
FAN11G2502 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.2e-08 61.2 74 45.9
Hma1.2p1_0012F.1_g007290 Hydrangea macrophylla HOM05D000001 ORTHO05D010435 1.2e-07 60.5 114 30.7
Lj6g0010510 Lotus japonicus HOM05D000001 ORTHO05D000003 1.6e-07 60.1 56 57.1
SalBow1G8022 Salvia bowleyana HOM05D000001 ORTHO05D000003 1.6e-07 60.1 66 45.5
AagrBONN_evm.TU.Sc2ySwM_340.36 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.7e-07 59.3 120 31.7
Medtr1g041310 Medicago truncatula HOM05D000001 ORTHO05D000003 4.7e-07 58.5 56 53.6
Os02g0670700 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 4.7e-07 58.5 76 43.4
SGA_v2.0_scaffold413G51166 Striga asiatica HOM05D000001 ORTHO05D000003 4.7e-07 58.5 54 59.3
TPR.G32775 Trifolium pratense HOM05D000001 ORTHO05D000003 8.0e-07 57.8 56 53.6
PSO566G0001 Papaver somniferum HOM05D000001 ORTHO05D010435 1.0e-06 57.4 110 33.6
Phvul.008G072900 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.4e-06 57.0 136 23.5
AagrBONN_evm.TU.Sc2ySwM_369.1 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.8e-06 56.6 152 27.6
AagrBONN_evm.TU.Sc2ySwM_228.84 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.3e-06 56.2 100 30.0
Lj1g0007768 Lotus japonicus HOM05D000001 ORTHO05D000003 3.0e-06 55.8 132 24.2
Atru.chr7.1435 Acer truncatum HOM05D000001 ORTHO05D010435 4.0e-06 55.5 114 30.7
Lj3g0006797 Lotus japonicus HOM05D000001 ORTHO05D000003 5.2e-06 55.1 107 33.6
Prupe.7G222600 Prunus persica HOM05D000001 ORTHO05D010435 5.2e-06 55.1 110 30.9
AagrBONN_evm.TU.Sc2ySwM_362.2549 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.7e-06 54.7 81 30.9
Cfa010976 Carpinus fangiana HOM05D000001 ORTHO05D000003 6.7e-06 54.7 151 25.8
Hma1.2p1_4100F.1_g338290 Hydrangea macrophylla HOM05D000001 ORTHO05D009595 6.7e-06 54.7 166 25.3
Peaxi162Scf00183g00042 Petunia axillaris HOM05D000001 ORTHO05D000003 6.7e-06 54.7 150 24.7
Solyc11g005970.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 6.7e-06 54.7 150 24.7
Sopen11g001910 Solanum pennellii HOM05D000001 ORTHO05D000003 6.7e-06 54.7 150 24.7
ECA238G1995 Erigeron canadensis HOM05D000001 ORTHO05D011365 8.8e-06 54.3 85 37.6
Nitab4.5_0010217g0020 Nicotiana tabacum HOM05D000001 ORTHO05D000003 8.8e-06 54.3 150 24.0


User provided reference genes

Program Settings