Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004488 Carpinus fangiana HOM05D005763 ORTHO05D005970 9.2e-282 973.0 533 100.0
Haze_10045 Corylus avellana HOM05D005763 ORTHO05D005970 4.8e-246 854.4 533 90.4
CiPaw.05G004900 Carya illinoinensis HOM05D005763 ORTHO05D005970 6.3e-198 694.5 604 69.9
QL02p100429 Quercus lobata HOM05D005763 ORTHO05D005970 4.5e-196 688.3 600 69.7
Dinv19414 Davidia involucrata HOM05D005763 ORTHO05D005970 1.1e-122 444.5 543 52.5
Prupe.1G578900 Prunus persica HOM05D005763 ORTHO05D005970 1.2e-116 424.5 603 50.1
MD15G1435300 Malus domestica HOM05D005763 ORTHO05D005970 3.7e-113 412.9 603 48.9
CSS0027988 Camellia sinensis var. sinensis HOM05D005763 ORTHO05D005970 3.8e-110 402.9 606 47.2
Ciclev10000672m.g Citrus clementina HOM05D005763 ORTHO05D005970 5.2e-107 392.5 607 50.4
Duzib132G0801 Durio zibethinus HOM05D005763 ORTHO05D005970 4.4e-106 389.4 605 49.3
Atru.chr6.496 Acer truncatum HOM05D005763 ORTHO05D005970 3.7e-105 386.3 572 51.9
Gohir.A01G183700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 4.8e-105 386.0 603 48.6
Cpa.g.sc113.46 Carica papaya HOM05D005763 ORTHO05D005970 1.1e-104 384.8 603 50.2
Gorai.002G216800 Gossypium raimondii HOM05D005763 ORTHO05D005970 3.2e-101 373.2 604 48.0
GSVIVG01023250001 Vitis vinifera HOM05D005763 ORTHO05D005970 9.4e-101 371.7 664 42.6
TWI14G0927 Tripterygium wilfordii HOM05D005763 ORTHO05D005970 1.6e-100 370.9 623 46.7
Thecc.02G018700 Theobroma cacao HOM05D005763 ORTHO05D005970 3.1e-96 356.7 604 47.7
TAR628G0443 Trochodendron aralioides HOM05D005763 ORTHO05D005970 3.2e-93 346.7 673 40.9
Rhsim11G0122700 Rhododendron simsii HOM05D005763 ORTHO05D005970 1.2e-92 344.7 613 44.2
RcHm_v2.0_Chr7g0220691 Rosa chinensis HOM05D005763 ORTHO05D005970 2.0e-90 337.4 536 48.7
Eucgr.I02762 Eucalyptus grandis HOM05D005763 ORTHO05D005970 2.6e-90 337.0 604 47.2
Manes.10G118700 Manihot esculenta HOM05D005763 ORTHO05D005970 3.4e-90 336.7 612 46.7
COL.COLO4_17725 Corchorus olitorius HOM05D005763 ORTHO05D005970 1.1e-88 331.6 605 46.3
MELO3C011821.2 Cucumis melo HOM05D005763 ORTHO05D005970 4.2e-85 319.7 613 43.4
Potri.004G223700 Populus trichocarpa HOM05D005763 ORTHO05D005970 1.8e-83 314.3 576 46.2
CANSAT54G0901 Cannabis sativa HOM05D005763 ORTHO05D005970 2.9e-81 307.0 586 46.2
CsaV3_5G029800 Cucumis sativus L. HOM05D005763 ORTHO05D005970 8.3e-81 305.4 606 43.7
arahy.Tifrunner.gnm1.ann1.67VJX2 Arachis hypogaea HOM05D005763 ORTHO05D005970 1.6e-79 301.2 620 43.4
arahy.Tifrunner.gnm1.ann1.JZ48ZW Arachis hypogaea HOM05D005763 ORTHO05D005970 4.6e-79 299.7 620 43.4
Nn7g37262 Nelumbo nucifera HOM05D005763 ORTHO05D005970 5.6e-77 292.7 683 37.2
PGR142G3615 Punica granatum HOM05D005763 ORTHO05D005970 5.6e-77 292.7 600 41.2
Cc02_g23160 Coffea canephora HOM05D005763 ORTHO05D005970 9.5e-77 292.0 612 38.1
VMungo0540G0189 Vigna mungo HOM05D005763 ORTHO05D005970 2.8e-76 290.4 615 41.0
MSTRG.16490 Avicennia marina HOM05D005763 ORTHO05D005970 3.6e-76 290.0 610 39.8
Phvul.006G219000 Phaseolus vulgaris HOM05D005763 ORTHO05D005970 3.6e-76 290.0 602 43.2
Sed0010757 Sechium edule HOM05D005763 ORTHO05D005970 1.5e-74 284.6 596 40.3
Psat1g222400 Pisum sativum HOM05D005763 ORTHO05D005970 1.3e-70 271.6 609 39.6
Nitab4.5_0004106g0020 Nicotiana tabacum HOM05D005763 ORTHO05D005970 9.5e-69 265.4 599 39.6
Medtr2g005820 Medicago truncatula HOM05D005763 ORTHO05D005970 1.2e-68 265.0 616 39.3
FvH4_5g28621 Fragaria vesca HOM05D005763 ORTHO05D005970 2.1e-68 264.2 600 41.5
Nitab4.5_0000787g0220 Nicotiana tabacum HOM05D005763 ORTHO05D005970 2.1e-68 264.2 614 38.8
FAN04G2209 Fragaria x ananassa HOM05D005763 ORTHO05D005970 4.7e-68 263.1 599 40.4
FAN18G2102 Fragaria x ananassa HOM05D005763 ORTHO05D005970 4.7e-68 263.1 602 41.4
TPR.G2121 Trifolium pratense HOM05D005763 ORTHO05D005970 2.6e-66 257.3 627 40.0
Lalb_Chr15g0090741 Lupinus albus HOM05D005763 ORTHO05D005970 1.3e-65 255.0 607 40.0
FAN08G3368 Fragaria x ananassa HOM05D005763 ORTHO05D005970 2.9e-65 253.8 608 39.5
Migut.B00776 Erythranthe guttata HOM05D005763 ORTHO05D005970 8.6e-62 242.3 617 35.8
CAN.G855.2 Capsicum annuum HOM05D005763 ORTHO05D005970 3.3e-61 240.4 603 36.8
Oeu000133.1 Olea europaea HOM05D005763 ORTHO05D005970 5.6e-61 239.6 655 36.0
ECA236G4930 Erigeron canadensis HOM05D005763 ORTHO05D005970 2.1e-60 237.7 595 36.5
Sc07g0005120 Simmondsia chinensis HOM05D005763 ORTHO05D005970 6.8e-59 232.6 613 34.1
Lsat_1_v5_gn_7_76141 Lactuca sativa HOM05D005763 ORTHO05D005970 1.2e-58 231.9 600 39.0
THA.LOC104820230 Tarenaya hassleriana HOM05D005763 ORTHO05D005970 5.8e-58 229.6 668 35.6
Gohir.D01G174700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 4.6e-55 219.9 239 57.3
Glyma.12G166900 Glycine max HOM05D005763 ORTHO05D005970 5.1e-54 216.5 612 38.6
Hma1.2p1_0633F.1_g192600 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 5.1e-54 216.5 237 56.5
PGSC0003DMG400024917 Solanum tuberosum HOM05D005763 ORTHO05D005970 5.1e-54 216.5 603 36.5
Ca_00042_v3 Cicer arietinum L. HOM05D005763 ORTHO05D005970 1.1e-53 215.3 566 35.9
Aqoxy5G02633 Aquilegia oxysepala HOM05D005763 ORTHO05D005970 1.5e-53 214.9 676 32.0
ClCG11G013280 Citrullus lanatus HOM05D005763 ORTHO05D005970 1.5e-53 214.9 635 35.1
PSO017G0231 Papaver somniferum HOM05D005763 ORTHO05D005970 1.9e-53 214.5 628 34.9
Glyma.16G003000 Glycine max HOM05D005763 ORTHO05D005970 5.6e-53 213.0 624 37.3
Solyc01g103570.3 Solanum lycopersicum HOM05D005763 ORTHO05D005970 9.6e-53 212.2 603 35.8
Sopen01g045920 Solanum pennellii HOM05D005763 ORTHO05D005970 6.2e-52 209.5 604 35.4
PSO170G4663 Papaver somniferum HOM05D005763 ORTHO05D005970 3.1e-51 207.2 628 33.8
vmacro01712 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 3.4e-50 203.8 1019 26.9
Peaxi162Scf00011g00123 Petunia axillaris HOM05D005763 ORTHO05D005970 2.4e-48 197.6 620 33.4
Lj6g0006999 Lotus japonicus HOM05D005763 ORTHO05D005970 8.7e-46 189.1 601 35.9
CDE08G1622 Ceratophyllum demersum HOM05D005763 ORTHO05D005970 1.6e-44 184.9 603 31.0
DCAR_001755 Daucus carota HOM05D005763 ORTHO05D005970 3.4e-42 177.2 537 33.1
SGA_v2.0_scaffold304G47918 Striga asiatica HOM05D005763 ORTHO05D005970 1.1e-40 172.2 633 31.1
Lj9A299T32 Lonicera japonica HOM05D005763 ORTHO05D005970 3.0e-38 164.1 293 42.0
Hund15460 Selenicereus undatus HOM05D005763 ORTHO05D005970 8.7e-38 162.5 636 31.8
Aa31LG2G11010 Aethionema arabicum HOM05D000113 ORTHO05D005835 1.1e-37 162.2 630 31.6
Actinidia39001 Actinidia chinensis HOM05D005763 ORTHO05D005970 6.9e-35 152.9 267 43.8
MBI06_g44454_MAGBIO Magnolia biondii HOM05D005763 ORTHO05D005970 9.0e-35 152.5 601 32.4
AL2G18660 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 5.8e-34 149.8 624 31.4
Carub.0002s0660 Capsella rubella HOM05D005763 ORTHO05D005970 2.9e-33 147.5 630 29.7
SalBow7G1738 Salvia bowleyana HOM05D005763 ORTHO05D005970 3.8e-33 147.1 570 31.6
Sabra01G0155000 Salix brachista HOM05D005763 ORTHO05D005970 3.2e-32 144.1 258 44.6
BcaB04g20185 Brassica carinata HOM05D005763 ORTHO05D005970 4.2e-32 143.7 617 30.5
AL2G18480 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 9.3e-32 142.5 635 32.8
MD08G1241300 Malus domestica HOM05D005763 ORTHO05D005970 1.3e-30 138.7 271 43.9
unitig_26.g9070 Utricularia gibba HOM05D005763 ORTHO05D005970 2.5e-29 134.4 580 28.8
Sp2g05580 Schrenkiella parvula HOM05D005763 ORTHO05D005970 4.3e-29 133.7 623 32.3
arahy.Tifrunner.gnm1.ann1.BFGT2Z Arachis hypogaea HOM05D005763 ORTHO05D005970 2.8e-28 131.0 139 63.3
EL10Ac6g14141 Beta vulgaris HOM05D005763 ORTHO05D005970 6.9e-27 126.3 413 30.3
AT1G58025 Arabidopsis thaliana HOM05D005763 ORTHO05D005970 1.2e-26 125.6 633 29.4
Sabra01G0169400 Salix brachista HOM05D005763 ORTHO05D005970 7.6e-26 122.9 193 53.4
BcaC09g49515 Brassica carinata HOM05D005763 ORTHO05D005970 8.4e-25 119.4 621 27.1
BraA01t02945Z Brassica rapa HOM05D005763 ORTHO05D005970 2.5e-24 117.9 611 28.3
A01p28160 Brassica napus HOM05D005763 ORTHO05D005970 3.2e-24 117.5 607 28.3
C01p35700 Brassica napus HOM05D005763 ORTHO05D005970 1.2e-23 115.5 621 26.9
BolC1t03529H Brassica oleracea HOM05D005763 ORTHO05D005970 1.2e-23 115.5 621 26.9
CARHR054180 Cardamine hirsuta HOM05D005763 ORTHO05D005970 4.6e-23 113.6 403 31.8
ATR1136G018 Amborella trichopoda HOM05D005763 ORTHO05D005970 6.0e-23 113.2 717 25.2
Thhalv10023369m.g Eutrema salsugineum HOM05D005763 ORTHO05D005970 1.3e-22 112.1 632 30.4
AUR62028255 Chenopodium quinoa HOM05D005763 ORTHO05D005970 4.3e-21 107.1 414 30.0
Hma1.2p1_0633F.1_g192590 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 8.2e-20 102.8 178 40.4
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 6.9e-19 99.8 236 35.6
HPP92_011333 Vanilla planifolia HOM05D005763 ORTHO05D005970 6.5e-17 93.2 640 26.6
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 8.4e-17 92.8 261 34.1
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 9.3e-16 89.4 236 35.6
HanXRQChr11g0338791 Helianthus annuus HOM05D005763 ORTHO05D005970 3.5e-15 87.4 384 28.9
MBI06_g48164_MAGBIO Magnolia biondii HOM05D005763 ORTHO05D005970 4.6e-15 87.0 183 39.9
Actinidia39003 Actinidia chinensis HOM05D005763 ORTHO05D005970 5.1e-14 83.6 239 33.1
AUR62040622 Chenopodium quinoa HOM05D005763 ORTHO05D005970 5.7e-13 80.1 302 29.1
Lj9A299T33 Lonicera japonica HOM05D005763 ORTHO05D005970 1.5e-10 72.0 85 49.4
Os08g0109500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 2.0e-10 71.6 482 25.1
AUR62040623 Chenopodium quinoa HOM05D005763 ORTHO05D005970 4.5e-10 70.5 48 68.8
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 2.2e-09 68.2 57 57.9
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 8.5e-09 66.2 80 50.0
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 8.5e-09 66.2 80 50.0
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 8.5e-09 66.2 80 50.0
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 1.1e-08 65.9 128 37.5
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 1.1e-08 65.9 171 34.5
Lsat_1_v5_gn_9_120321 Lactuca sativa HOM05D005763 ORTHO05D005970 1.9e-08 65.1 128 37.5
Thecc.02G018900 Theobroma cacao HOM05D005763 ORTHO05D005970 1.9e-08 65.1 83 50.6
arahy.Tifrunner.gnm1.ann1.V25XF9 Arachis hypogaea HOM05D005763 ORTHO05D005970 2.5e-08 64.7 75 50.7
Lsat_1_v5_gn_9_120281 Lactuca sativa HOM05D005763 ORTHO05D005970 2.5e-08 64.7 141 36.9
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 4.2e-08 63.9 152 35.5
SEGI_32531 Sequoiadendron giganteum HOM05D005763 ORTHO05D005970 1.6e-07 62.0 45 60.0
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 2.7e-07 61.2 238 27.7
SEGI_38432 Sequoiadendron giganteum HOM05D005763 ORTHO05D005970 2.7e-07 61.2 256 27.7
Zm00001eb174170 Zea mays HOM05D005763 ORTHO05D005970 3.6e-07 60.8 640 23.0
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 4.6e-07 60.5 125 37.6
Os06g0355500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 6.1e-07 60.1 122 37.7
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 6.1e-07 60.1 86 43.0
HanXRQChr03g0064951 Helianthus annuus HOM05D005763 ORTHO05D005970 1.4e-06 58.9 116 37.9
Prupe.1G578800 Prunus persica HOM05D005763 ORTHO05D005970 1.4e-06 58.9 81 45.7
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.8e-06 58.5 81 43.2
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 1.8e-06 58.5 81 44.4
MD09G1027200 Malus domestica HOM05D005763 ORTHO05D005970 1.8e-06 58.5 87 46.0
DCAR_001756 Daucus carota HOM05D001309 ORTHO05D000385 2.3e-06 58.2 42 66.7
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 3.0e-06 57.8 83 43.4
MD15G1435000 Malus domestica HOM05D005763 ORTHO05D005970 5.1e-06 57.0 88 39.8
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 5.1e-06 57.0 115 37.4
Cpa.g.sc113.47 Carica papaya HOM05D005763 ORTHO05D005970 6.7e-06 56.6 214 29.9
Lj5A265G37 Lonicera japonica HOM05D005763 ORTHO05D005970 8.8e-06 56.2 38 68.4


User provided reference genes

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