Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004447 Carpinus fangiana HOM05D008164 ORTHO05D010222 3.0e-82 308.5 164 100.0
Haze_09987 Corylus avellana HOM05D008164 ORTHO05D010222 1.5e-73 279.6 164 93.3
CiPaw.05G001800 Carya illinoinensis HOM05D008164 ORTHO05D010222 4.4e-49 198.4 159 64.2
Thecc.06G017700 Theobroma cacao HOM05D008164 ORTHO05D010222 3.3e-36 155.6 165 51.5
QL02p103286 Quercus lobata HOM05D008164 ORTHO05D010222 9.5e-36 154.1 177 61.6
Duzib235G0793 Durio zibethinus HOM05D008164 ORTHO05D010222 1.4e-34 150.2 164 51.8
TAR628G0422 Trochodendron aralioides HOM05D008164 ORTHO05D010222 1.4e-34 150.2 162 53.1
Dinv29630 Davidia involucrata HOM05D000112 ORTHO05D000564 8.3e-32 141.0 167 58.7
Gohir.A05G110000 Gossypium hirsutum HOM05D008164 ORTHO05D010222 1.3e-29 133.7 173 45.7
Ciclev10002734m.g Citrus clementina HOM05D008164 ORTHO05D010222 1.1e-28 130.6 176 46.0
Manes.10G108200 Manihot esculenta HOM05D008164 ORTHO05D010222 7.3e-28 127.9 164 55.5
Potri.003G001200 Populus trichocarpa HOM05D008164 ORTHO05D010222 1.2e-27 127.1 166 55.4
Gohir.D05G110300 Gossypium hirsutum HOM05D008164 ORTHO05D010222 2.1e-27 126.3 169 49.7
Gorai.009G114500 Gossypium raimondii HOM05D008164 ORTHO05D010222 2.1e-27 126.3 169 49.7
Prupe.1G585100 Prunus persica HOM05D008164 ORTHO05D010222 3.6e-27 125.6 186 49.5
DCAR_003281 Daucus carota HOM05D008164 ORTHO05D010222 1.9e-23 113.2 164 47.0
TWI14G0748 Tripterygium wilfordii HOM05D008164 ORTHO05D010222 5.4e-23 111.7 169 49.1
Cc02_g23560 Coffea canephora HOM05D008164 ORTHO05D010222 7.8e-22 107.8 175 51.4
Atru.chr6.245 Acer truncatum HOM05D008164 ORTHO05D010222 1.7e-21 106.7 187 41.2
Lj5P282T61 Lonicera japonica HOM05D008164 ORTHO05D010222 5.1e-21 105.1 183 45.9
Rhsim11G0118100 Rhododendron simsii HOM05D008164 ORTHO05D010222 6.6e-21 104.8 157 49.7
Solyc01g103070.2 Solanum lycopersicum HOM05D008164 ORTHO05D010222 6.6e-21 104.8 172 47.7
Sopen01g045480 Solanum pennellii HOM05D008164 ORTHO05D010222 1.1e-20 104.0 172 47.7
Sc23g0003940 Simmondsia chinensis HOM05D008164 ORTHO05D010222 1.9e-20 103.2 168 50.0
PSO017G5192 Papaver somniferum HOM05D008164 ORTHO05D010222 4.3e-20 102.1 172 40.1
FAN04G0245 Fragaria x ananassa HOM05D008164 ORTHO05D010222 1.2e-19 100.5 173 50.9
Peaxi162Scf00011g00188 Petunia axillaris HOM05D008164 ORTHO05D010222 1.6e-19 100.1 174 44.3
PGSC0003DMG400038752 Solanum tuberosum HOM05D008164 ORTHO05D010222 4.7e-19 98.6 164 47.6
FvH4_5g28060 Fragaria vesca HOM05D008164 ORTHO05D010222 2.4e-18 96.3 176 49.4
Cpa.g.sc173.30 Carica papaya HOM05D008164 ORTHO05D010222 8.9e-18 94.4 167 39.5
COL.COLO4_31129 Corchorus olitorius HOM05D000112 ORTHO05D000564 8.9e-18 94.4 155 52.9
FAN18G4000 Fragaria x ananassa HOM05D008164 ORTHO05D010222 5.8e-17 91.7 180 47.8
PGR142G0304 Punica granatum HOM05D008164 ORTHO05D010222 3.8e-16 89.0 137 40.1
BcaNung01134 Brassica carinata HOM05D008164 ORTHO05D010222 8.4e-16 87.8 163 35.0
Oeu043611.1 Olea europaea HOM05D008164 ORTHO05D010222 8.4e-16 87.8 165 45.5
Sp7g22250 Schrenkiella parvula HOM05D008164 ORTHO05D010222 8.4e-16 87.8 160 35.6
TAR376G0048 Trochodendron aralioides HOM05D008164 ORTHO05D010222 1.4e-15 87.0 154 44.8
ATR0580G429 Amborella trichopoda HOM05D008164 ORTHO05D010222 2.4e-15 86.3 161 35.4
Cpa.g.sc173.36 Carica papaya HOM05D008164 ORTHO05D010222 4.2e-15 85.5 165 36.4
A01p15590 Brassica napus HOM05D008164 ORTHO05D010222 5.4e-15 85.1 163 35.0
BraA01t01499Z Brassica rapa HOM05D008164 ORTHO05D010222 5.4e-15 85.1 163 35.0
Nitab4.5_0004668g0050 Nicotiana tabacum HOM05D008164 ORTHO05D010222 9.2e-15 84.3 161 46.6
Cpa.g.sc173.26 Carica papaya HOM05D008164 ORTHO05D010222 1.2e-14 84.0 164 36.0
CARHR231690 Cardamine hirsuta HOM05D008164 ORTHO05D010222 1.6e-14 83.6 149 36.2
Glyma.12G164000 Glycine max HOM05D008164 ORTHO05D010222 1.6e-14 83.6 163 44.8
BolC1t01882H Brassica oleracea HOM05D008164 ORTHO05D010222 2.1e-14 83.2 163 35.0
BcaC09g50889 Brassica carinata HOM05D008164 ORTHO05D010222 2.7e-14 82.8 163 34.4
C01p19540 Brassica napus HOM05D008164 ORTHO05D010222 2.7e-14 82.8 163 34.4
Aqoxy7G02312 Aquilegia oxysepala HOM05D008164 ORTHO05D010222 3.5e-14 82.4 174 39.7
AL7G28990 Arabidopsis lyrata HOM05D008164 ORTHO05D010222 6.0e-14 81.6 159 37.1
Carub.0007s1679 Capsella rubella HOM05D008164 ORTHO05D010222 1.0e-13 80.9 185 33.0
Thhalv10026492m.g Eutrema salsugineum HOM05D008164 ORTHO05D010222 1.3e-13 80.5 162 35.8
PSO478G3084 Papaver somniferum HOM05D008164 ORTHO05D010222 1.3e-13 80.5 146 40.4
Lsat_1_v5_gn_9_121861 Lactuca sativa HOM05D008164 ORTHO05D010222 2.3e-13 79.7 171 42.7
BcaC09g50645 Brassica carinata HOM05D008164 ORTHO05D010222 3.9e-13 79.0 158 34.8
C01p22560 Brassica napus HOM05D008164 ORTHO05D010222 3.9e-13 79.0 158 34.8
BolC1t02189H Brassica oleracea HOM05D008164 ORTHO05D010222 3.9e-13 79.0 158 34.8
AT4G24265 Arabidopsis thaliana HOM05D008164 ORTHO05D010222 5.1e-13 78.6 161 37.3
Manes.07G030300 Manihot esculenta HOM05D008164 ORTHO05D010222 1.5e-12 77.0 165 38.2
Migut.N00863 Erythranthe guttata HOM05D008164 ORTHO05D010222 4.3e-12 75.5 171 35.7
Phvul.006G221400 Phaseolus vulgaris HOM05D045043 ORTHO05D010222 8.1e-11 71.2 165 42.4
FAN08G3488 Fragaria x ananassa HOM05D008164 ORTHO05D010222 1.1e-10 70.9 113 45.1
RcHm_v2.0_Chr7g0220231 Rosa chinensis HOM05D008164 ORTHO05D010222 2.4e-10 69.7 102 48.0
Cpa.g.c34058.1 Carica papaya HOM05D008164 ORTHO05D010222 4.4e-09 65.5 156 37.8
Nitab4.5_0008306g0040 Nicotiana tabacum HOM05D008164 ORTHO05D010222 5.8e-09 65.1 145 47.6
VMungo0540G1303 Vigna mungo HOM05D045043 ORTHO05D010222 2.9e-08 62.8 162 40.1
Cpa.g.sc173.33 Carica papaya HOM05D008164 ORTHO05D010222 3.8e-08 62.4 140 38.6
Cpa.g.sc173.39 Carica papaya HOM05D008164 ORTHO05D010222 6.4e-08 61.6 140 37.9
SGA_v2.0_scaffold8G04458 Striga asiatica HOM05D008164 ORTHO05D010222 1.1e-07 60.8 176 34.7
Eucgr.I02795 Eucalyptus grandis HOM05D008164 ORTHO05D010222 1.4e-07 60.5 194 28.9
MELO3C022933.2 Cucumis melo HOM05D051489 ORTHO05D044912 2.4e-07 59.7 129 32.6
arahy.Tifrunner.gnm1.ann1.S0ITFJ Arachis hypogaea HOM05D037561 ORTHO05D010222 2.7e-06 56.2 185 38.4


User provided reference genes

Program Settings