Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 0.0e+00 1305.4 721 100.0
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 0.0e+00 1241.5 808 87.4
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 0.0e+00 1129.0 723 86.3
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 0.0e+00 1085.5 722 84.2
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 7.6e-295 1016.9 725 78.3
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 3.5e-292 1008.1 725 78.1
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 9.6e-290 1000.0 721 77.5
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 8.1e-289 996.9 729 77.2
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 3.2e-285 984.9 725 76.7
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 3.3e-282 974.9 724 75.6
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 5.3e-280 967.6 726 75.5
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 5.4e-277 957.6 697 76.8
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 7.1e-277 957.2 721 73.8
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 5.1e-275 951.0 725 74.8
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 1.5e-274 949.5 725 74.9
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.1e-272 943.3 727 73.6
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 9.0e-272 940.3 730 73.6
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 2.0e-271 939.1 728 73.5
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 3.8e-270 934.9 722 73.3
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 6.4e-270 934.1 725 73.9
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 1.1e-269 933.3 726 73.4
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 5.4e-269 931.0 691 74.0
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 7.1e-269 930.6 702 74.6
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 4.6e-268 927.9 721 72.0
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 1.1e-266 923.3 725 72.3
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 1.6e-265 919.5 751 70.3
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 5.3e-264 914.4 728 70.9
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 5.3e-264 914.4 672 77.7
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 5.3e-264 914.4 729 71.6
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 3.4e-263 911.8 723 70.8
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 5.8e-263 911.0 721 71.8
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 7.6e-263 910.6 723 72.9
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 3.2e-261 905.2 725 70.1
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 1.6e-260 902.9 725 69.9
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 2.1e-260 902.5 728 70.2
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 2.3e-259 899.0 727 70.3
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 6.2e-257 891.0 721 70.7
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 1.4e-256 889.8 728 70.1
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 5.3e-256 887.9 745 68.5
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 1.5e-255 886.3 727 70.0
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 2.6e-255 885.6 723 69.3
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 3.2e-253 878.6 723 69.2
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 9.3e-253 877.1 729 67.8
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 1.2e-252 876.7 723 68.2
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 3.5e-252 875.2 721 68.2
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 1.0e-251 873.6 723 67.4
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 2.3e-251 872.5 723 67.5
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 6.7e-251 870.9 722 68.7
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 2.5e-250 869.0 723 68.5
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 3.3e-250 868.6 729 67.2
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 5.7e-250 867.8 727 68.5
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.6e-249 866.3 797 66.1
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 2.8e-249 865.5 725 66.9
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 1.4e-248 863.2 723 67.1
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 1.8e-248 862.8 722 66.8
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 1.2e-247 860.1 725 66.3
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 1.5e-247 859.8 695 70.4
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 1.5e-247 859.8 732 67.5
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 1.3e-246 856.7 724 67.1
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 2.1e-244 849.4 724 66.0
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 5.1e-243 844.7 724 66.4
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 5.1e-243 844.7 811 63.0
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 2.0e-242 842.8 721 66.6
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 7.4e-242 840.9 692 69.8
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 6.9e-240 834.3 726 66.1
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 3.8e-238 828.6 722 65.2
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.1e-237 827.0 727 68.2
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 3.2e-237 825.5 714 66.2
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 3.6e-236 822.0 700 67.7
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 3.6e-236 822.0 733 64.8
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 4.7e-236 821.6 724 65.2
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 4.7e-236 821.6 724 65.2
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 3.0e-235 818.9 728 65.4
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 2.0e-234 816.2 725 67.0
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 2.6e-234 815.8 738 64.0
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 7.4e-234 814.3 663 72.1
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 4.5e-231 805.1 722 66.5
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 5.7e-226 788.1 694 64.8
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 1.3e-222 776.9 720 61.5
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 4.7e-220 768.5 744 61.3
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 2.3e-219 766.1 723 64.3
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 1.3e-214 750.4 698 63.0
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 1.9e-213 746.5 723 61.7
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 1.4e-208 730.3 673 62.7
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 2.5e-205 719.5 776 56.6
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 6.8e-203 711.4 724 58.7
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 5.2e-195 685.3 729 56.7
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 7.5e-194 681.4 594 67.7
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 5.0e-190 668.7 674 59.6
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 1.4e-184 650.6 731 53.5
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 1.2e-172 610.9 723 51.7
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 4.8e-164 582.4 554 63.4
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 8.1e-164 581.6 577 59.3
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 1.0e-150 538.1 425 72.5
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 5.8e-146 522.3 359 79.1
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 1.2e-143 514.6 583 55.6
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 5.1e-142 509.2 424 71.5
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 2.1e-140 503.8 363 75.8
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 7.2e-128 462.2 299 80.6
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 9.4e-112 408.7 271 79.7
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 1.0e-110 405.2 372 62.4
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 5.7e-93 346.3 502 50.6
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 1.3e-92 345.1 729 35.1
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 6.1e-87 326.2 445 48.8
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.0e-86 323.9 344 58.7
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 1.4e-83 315.1 371 55.8
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 3.3e-80 303.9 272 64.7
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 6.2e-79 299.7 730 33.4
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 1.4e-78 298.5 666 38.6
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 1.7e-76 291.6 688 31.4
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 1.3e-68 265.4 715 30.5
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 3.4e-61 240.7 764 28.3
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.7e-42 177.9 136 70.6
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 3.5e-26 124.4 110 63.6
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.1e-24 119.4 84 70.2
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 3.3e-24 117.9 502 25.1
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 3.3e-24 117.9 161 52.2
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.3e-23 115.9 144 49.3
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 1.4e-22 112.5 105 63.8
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 5.9e-21 107.1 125 48.0
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 1.7e-20 105.5 94 59.6
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.6e-18 99.0 154 43.5
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 2.7e-18 98.2 70 71.4
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 6.1e-18 97.1 105 54.3
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.4e-16 90.1 55 85.5
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 4.8e-15 87.4 98 52.0
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 1.8e-14 85.5 159 35.8
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 2.6e-13 81.6 118 39.0
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 7.7e-13 80.1 68 60.3
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 6.5e-12 77.0 55 70.9
MD15G1442500 Malus domestica HOM05D006009 ORTHO05D007389 1.8e-09 68.9 41 80.5
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 4.1e-06 57.8 41 70.7


User provided reference genes

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