Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 2.5e-173 612.1 318 100.0
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 1.5e-138 496.5 354 76.8
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 9.9e-122 440.7 323 74.9
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 1.2e-119 433.7 330 70.9
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 6.6e-118 427.9 295 77.6
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 4.7e-116 421.8 301 74.4
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 1.1e-115 420.6 296 75.0
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 1.8e-115 419.9 293 74.7
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 3.1e-115 419.1 322 72.0
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 2.6e-114 416.0 263 81.4
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 5.8e-114 414.8 320 72.8
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 1.7e-113 413.3 282 76.2
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 2.2e-113 412.9 261 81.6
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 2.9e-113 412.5 313 69.6
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 3.8e-113 412.1 286 75.9
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 3.8e-113 412.1 315 67.9
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 1.1e-112 410.6 259 80.3
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 1.9e-112 409.8 246 82.9
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 2.4e-112 409.5 292 74.7
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 3.2e-112 409.1 285 75.4
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 4.1e-112 408.7 271 77.5
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 5.4e-112 408.3 264 80.7
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 5.4e-112 408.3 295 73.6
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 4.6e-111 405.2 239 85.4
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 4.6e-111 405.2 299 70.2
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 6.0e-111 404.8 241 85.1
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 1.0e-110 404.1 300 72.0
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 3.0e-110 402.5 299 69.9
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 1.5e-109 400.2 238 83.6
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 1.5e-109 400.2 242 83.9
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 3.3e-109 399.1 294 72.4
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 7.3e-109 397.9 233 84.5
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 9.6e-109 397.5 300 70.7
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 2.1e-108 396.4 258 80.2
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 2.1e-108 396.4 243 83.1
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 2.1e-108 396.4 243 83.1
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 3.6e-108 395.6 242 83.5
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 4.7e-108 395.2 241 83.4
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 4.7e-108 395.2 243 82.7
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 8.1e-108 394.4 291 69.4
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 1.1e-107 394.0 251 78.1
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.4e-107 393.7 241 82.6
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 5.2e-107 391.7 256 78.1
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 1.2e-106 390.6 255 76.1
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 2.6e-106 389.4 294 70.1
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 7.6e-106 387.9 227 85.0
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 2.9e-105 386.0 255 76.9
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 4.9e-105 385.2 249 77.5
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 8.4e-105 384.4 241 78.8
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 1.4e-104 383.6 248 77.8
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 2.4e-104 382.9 244 79.5
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 2.4e-104 382.9 243 78.6
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.1e-103 379.8 318 65.1
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 2.1e-103 379.8 304 67.1
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 2.7e-103 379.4 251 77.3
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 3.5e-103 379.0 238 79.4
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 4.6e-103 378.6 228 81.6
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 1.0e-102 377.5 300 66.3
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 1.3e-102 377.1 274 70.8
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 1.7e-102 376.7 300 66.7
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 1.7e-102 376.7 301 66.4
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 1.7e-102 376.7 261 75.5
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 1.7e-102 376.7 305 67.2
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 3.9e-102 375.6 238 77.3
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 3.9e-102 375.6 244 77.0
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 3.9e-102 375.6 244 76.6
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 3.9e-102 375.6 320 63.1
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 1.5e-101 373.6 223 83.0
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 4.3e-101 372.1 395 55.7
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 5.6e-101 371.7 207 89.4
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 5.6e-101 371.7 244 77.5
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 7.3e-101 371.3 364 59.1
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 9.6e-101 370.9 320 63.4
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 1.3e-100 370.5 249 74.7
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 1.3e-100 370.5 265 72.5
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 3.6e-100 369.0 249 75.5
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 8.1e-100 367.9 320 63.8
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 1.4e-99 367.1 293 63.8
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 4.0e-99 365.5 279 67.7
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 1.5e-98 363.6 207 86.5
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 3.4e-98 362.5 241 75.5
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 4.5e-98 362.1 238 76.1
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.2e-97 359.8 305 64.9
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 4.9e-97 358.6 272 71.0
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 6.4e-97 358.2 226 77.9
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 1.1e-96 357.5 238 73.5
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 2.4e-96 356.3 305 63.6
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 9.3e-96 354.4 241 75.1
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 4.6e-95 352.1 211 83.4
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 6.0e-95 351.7 216 81.5
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 1.3e-92 344.0 226 74.8
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 2.8e-92 342.8 244 73.8
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 6.2e-92 341.7 247 72.5
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 4.5e-90 335.5 310 64.8
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 5.8e-90 335.1 260 68.8
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 1.4e-88 330.5 236 71.2
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 7.9e-87 324.7 204 81.4
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 1.8e-86 323.6 193 82.9
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 1.8e-86 323.6 306 62.7
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 3.9e-86 322.4 231 68.8
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 5.1e-86 322.0 222 72.1
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 6.7e-86 321.6 226 70.4
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 2.4e-83 313.2 310 57.1
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 4.5e-82 308.9 264 65.2
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 2.2e-73 280.0 243 63.4
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 2.5e-72 276.6 226 61.9
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 2.3e-70 270.0 172 74.4
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 1.1e-69 267.7 207 69.6
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 1.3e-68 264.2 197 70.6
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 4.8e-68 262.3 255 54.5
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 4.2e-64 249.2 173 73.4
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 1.0e-54 218.0 177 58.2
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 4.8e-52 209.1 171 65.5
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 3.6e-47 193.0 162 64.2
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 3.5e-42 176.4 168 58.9
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 9.4e-40 168.3 173 55.5
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 4.7e-39 166.0 130 67.7
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 6.8e-38 162.2 104 74.0
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 1.9e-32 144.1 269 41.6
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 3.4e-29 133.3 230 40.9
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 4.9e-28 129.4 180 47.2
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 2.7e-26 123.6 147 49.0
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 2.3e-22 110.5 144 47.2
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.4e-19 101.3 246 30.1
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 1.9e-19 100.9 65 70.8
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 3.2e-19 100.1 99 58.6
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 3.9e-17 93.2 57 75.4
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 1.1e-16 91.7 220 29.5
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 2.8e-15 87.0 87 63.2
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 6.2e-15 85.9 55 72.7
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 3.4e-13 80.1 46 80.4
FAN13G2879 Fragaria x ananassa HOM05D005661 ORTHO05D046262 1.5e-08 64.7 202 33.7
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 5.6e-08 62.8 64 59.4
Medtr4g129075 Medicago truncatula HOM05D005661 ORTHO05D266434 4.0e-06 56.6 32 81.2


User provided reference genes

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