Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 1.0e-140 503.4 266 100.0
Haze_15004 Corylus avellana HOM05D008494 ORTHO05D010021 4.3e-46 189.1 102 91.2
QL03p011411 Quercus lobata HOM05D008494 ORTHO05D010021 4.8e-37 159.1 100 76.0
CiPaw.02G000600 Carya illinoinensis HOM05D008494 ORTHO05D010021 1.0e-34 151.4 118 66.1
Prupe.6G302200 Prunus persica HOM05D008494 ORTHO05D010021 1.5e-27 127.5 107 60.7
Manes.09G182700 Manihot esculenta HOM05D008494 ORTHO05D010021 2.5e-25 120.2 103 62.1
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 3.2e-25 119.8 108 63.9
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 4.2e-25 119.4 108 63.0
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 1.2e-24 117.9 113 59.3
Manes.08G105911 Manihot esculenta HOM05D008494 ORTHO05D010021 2.1e-24 117.1 115 55.7
RcHm_v2.0_Chr3g0459041 Rosa chinensis HOM05D008494 ORTHO05D010021 4.7e-24 115.9 109 54.1
MD04G1183700 Malus domestica HOM05D008494 ORTHO05D010021 6.7e-23 112.1 125 51.2
FAN14G1748 Fragaria x ananassa HOM05D008494 ORTHO05D010021 1.5e-22 110.9 109 57.8
Oeu000174.1 Olea europaea HOM05D008494 ORTHO05D010021 3.3e-22 109.8 117 51.3
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 4.4e-22 109.4 103 59.2
Lalb_Chr02g0147351 Lupinus albus HOM05D008494 ORTHO05D010021 9.7e-22 108.2 103 52.4
Oeu033225.1 Olea europaea HOM05D008494 ORTHO05D010021 9.7e-22 108.2 96 54.2
DCAR_029308 Daucus carota HOM05D008494 ORTHO05D010021 1.3e-21 107.8 107 49.5
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 1.7e-21 107.5 69 81.2
Ciclev10030055m.g Citrus clementina HOM05D008494 ORTHO05D010021 1.4e-20 104.4 117 49.6
Glyma.03G227000 Glycine max HOM05D008494 ORTHO05D010021 1.8e-20 104.0 118 47.5
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 1.8e-20 104.0 102 59.8
Peaxi162Scf00194g00512 Petunia axillaris HOM05D008494 ORTHO05D010021 3.1e-20 103.2 105 54.3
Atru.chr12.1506 Acer truncatum HOM05D008494 ORTHO05D010021 4.1e-20 102.8 108 51.9
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 6.9e-20 102.1 94 60.6
VMungo1383G1264 Vigna mungo HOM05D008494 ORTHO05D010021 1.5e-19 100.9 120 44.2
Atru.chr12.1501 Acer truncatum HOM05D008494 ORTHO05D010021 3.4e-19 99.8 108 50.9
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 4.5e-19 99.4 93 59.1
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 7.7e-19 98.6 105 55.2
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 1.0e-18 98.2 107 53.3
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 1.3e-18 97.8 104 56.7
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.9e-18 96.7 104 61.5
Glyma.19G223900 Glycine max HOM05D008494 ORTHO05D010021 2.9e-18 96.7 119 44.5
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 5.0e-18 95.9 112 51.8
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 6.5e-18 95.5 114 51.8
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 8.5e-18 95.1 113 52.2
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 8.5e-18 95.1 90 61.1
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 1.1e-17 94.7 130 49.2
Potri.013G000100 Populus trichocarpa HOM05D008494 ORTHO05D010021 1.9e-17 94.0 113 46.0
Rhsim11G0107000 Rhododendron simsii HOM05D000136 ORTHO05D000080 1.9e-17 94.0 110 45.5
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 2.5e-17 93.6 122 51.6
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.2e-17 93.2 104 63.5
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.2e-17 93.2 104 63.5
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 3.2e-17 93.2 104 63.5
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 4.2e-17 92.8 111 50.5
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 5.5e-17 92.4 101 52.5
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 7.2e-17 92.0 95 54.7
Peaxi162Scf00071g00117 Petunia axillaris HOM05D008494 ORTHO05D010021 7.2e-17 92.0 100 47.0
Phvul.001G220800 Phaseolus vulgaris HOM05D008494 ORTHO05D010021 7.2e-17 92.0 118 41.5
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 9.4e-17 91.7 120 52.5
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 9.4e-17 91.7 95 54.7
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 9.4e-17 91.7 95 54.7
Medtr7g111200 Medicago truncatula HOM05D008494 ORTHO05D010021 9.4e-17 91.7 120 44.2
Dinv30960 Davidia involucrata HOM05D008494 ORTHO05D010021 2.7e-16 90.1 75 62.7
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 3.6e-16 89.7 87 59.8
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 3.6e-16 89.7 107 55.1
DCAR_003254 Daucus carota HOM05D008494 ORTHO05D010021 4.7e-16 89.4 100 46.0
TPR.G1638 Trifolium pratense HOM05D008494 ORTHO05D010021 6.1e-16 89.0 121 43.8
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 8.0e-16 88.6 121 49.6
Thecc.05G331500 Theobroma cacao HOM05D008494 ORTHO05D010021 8.0e-16 88.6 94 54.3
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 1.0e-15 88.2 88 70.5
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 1.4e-15 87.8 121 47.1
Solyc01g102430.2 Solanum lycopersicum HOM05D008494 ORTHO05D010021 1.4e-15 87.8 101 48.5
Lalb_Chr04g0260271 Lupinus albus HOM05D008494 ORTHO05D010021 5.2e-15 85.9 123 45.5
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 5.2e-15 85.9 91 54.9
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 6.7e-15 85.5 103 53.4
Potri.005G000800 Populus trichocarpa HOM05D008494 ORTHO05D010021 1.5e-14 84.3 130 43.1
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 2.0e-14 84.0 96 55.2
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 2.0e-14 84.0 108 50.0
arahy.Tifrunner.gnm1.ann1.J2KNI4 Arachis hypogaea HOM05D008494 ORTHO05D010021 3.3e-14 83.2 102 44.1
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 7.4e-14 82.0 99 59.6
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 9.7e-14 81.6 95 56.8
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 9.7e-14 81.6 92 60.9
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 1.3e-13 81.3 70 62.9
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 1.3e-13 81.3 108 57.4
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 1.7e-13 80.9 112 51.8
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 2.8e-13 80.1 116 53.4
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 3.7e-13 79.7 109 45.9
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 3.7e-13 79.7 114 45.6
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 3.7e-13 79.7 92 53.3
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 1.1e-12 78.2 100 49.0
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 2.4e-12 77.0 100 51.0
Lalb_Chr21g0309951 Lupinus albus HOM05D008494 ORTHO05D010021 2.4e-12 77.0 65 56.9
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 2.4e-12 77.0 77 75.3
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 4.1e-12 76.3 90 52.2
Lj1g0018830 Lotus japonicus HOM05D008494 ORTHO05D010021 4.1e-12 76.3 116 42.2
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 4.1e-12 76.3 114 43.9
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 5.3e-12 75.9 59 69.5
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 7.0e-12 75.5 86 64.0
SGA_v2.0_scaffold311G48250 Striga asiatica HOM05D008494 ORTHO05D010021 9.1e-12 75.1 94 44.7
Nitab4.5_0004090g0020 Nicotiana tabacum HOM05D008494 ORTHO05D010021 1.6e-11 74.3 82 52.4
Actinidia17727 Actinidia chinensis HOM05D008494 ORTHO05D010021 2.6e-11 73.6 58 60.3
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 3.5e-11 73.2 82 61.0
Hma1.2p1_0157F.1_g069490 Hydrangea macrophylla HOM05D008494 ORTHO05D010021 4.5e-11 72.8 67 55.2
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 7.7e-11 72.0 110 50.9
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 1.0e-10 71.6 71 59.2
ECA234G2754 Erigeron canadensis HOM05D008494 ORTHO05D010021 1.7e-10 70.9 119 38.7
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 2.2e-10 70.5 82 52.4
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 2.9e-10 70.1 108 44.4
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 3.8e-10 69.7 93 54.8
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 5.0e-10 69.3 48 77.1
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 1.1e-09 68.2 92 48.9
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 1.1e-09 68.2 92 48.9
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 1.1e-09 68.2 92 48.9
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 1.5e-09 67.8 80 62.5
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 1.9e-09 67.4 92 56.5
Thhalv10005177m.g Eutrema salsugineum HOM05D003663 ORTHO05D010021 1.9e-09 67.4 86 44.2
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 2.5e-09 67.0 93 45.2
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 2.5e-09 67.0 73 63.0
Carub.0006s2421 Capsella rubella HOM05D003663 ORTHO05D010021 3.2e-09 66.6 98 41.8
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 3.2e-09 66.6 81 58.0
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 3.2e-09 66.6 113 44.2
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 4.2e-09 66.2 79 63.3
Migut.B00913 Erythranthe guttata HOM05D008494 ORTHO05D010021 4.2e-09 66.2 93 46.2
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 4.2e-09 66.2 89 59.6
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 5.5e-09 65.9 88 62.5
AL6G38400 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 5.5e-09 65.9 89 58.4
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 5.5e-09 65.9 92 55.4
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 5.5e-09 65.9 92 55.4
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 5.5e-09 65.9 92 55.4
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 5.5e-09 65.9 127 44.1
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 5.5e-09 65.9 98 54.1
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 7.2e-09 65.5 96 46.9
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 7.2e-09 65.5 70 52.9
Oeu025675.1 Olea europaea HOM05D008494 ORTHO05D010021 9.4e-09 65.1 76 46.1
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 1.2e-08 64.7 92 55.4
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 1.2e-08 64.7 92 55.4
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 1.6e-08 64.3 93 57.0
CARHR186980 Cardamine hirsuta HOM05D007325 ORTHO05D009251 3.6e-08 63.2 67 70.1
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 4.7e-08 62.8 92 44.6
Sp2g21380 Schrenkiella parvula HOM05D003663 ORTHO05D010021 4.7e-08 62.8 89 40.4
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 4.7e-08 62.8 82 47.6
CARHR080410 Cardamine hirsuta HOM05D003663 ORTHO05D010021 6.1e-08 62.4 95 41.1
Sed0022272 Sechium edule HOM05D007325 ORTHO05D009251 8.0e-08 62.0 95 43.2
GSVIVG01031356001 Vitis vinifera HOM05D008494 ORTHO05D010021 8.0e-08 62.0 48 64.6
Sp3g04840 Schrenkiella parvula HOM05D003663 ORTHO05D010021 3.0e-07 60.1 96 37.5
Ah.02g121360 Amaranthus hybridus HOM05D008494 ORTHO05D010021 4.0e-07 59.7 75 38.7
CARHR186970 Cardamine hirsuta HOM05D003663 ORTHO05D010021 4.0e-07 59.7 86 39.5
Thhalv10021806m.g Eutrema salsugineum HOM05D003663 ORTHO05D010021 4.0e-07 59.7 93 39.8
Nn4g25250 Nelumbo nucifera HOM05D008494 ORTHO05D010021 4.0e-07 59.7 103 36.9
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 6.7e-07 58.9 223 28.7
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 6.7e-07 58.9 197 29.4
A06p36820 Brassica napus HOM05D007325 ORTHO05D009251 6.7e-07 58.9 78 57.7
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 6.7e-07 58.9 89 44.9
Sc07g0001870 Simmondsia chinensis HOM05D008494 ORTHO05D010021 6.7e-07 58.9 123 35.8
BcaC04g23625 Brassica carinata HOM05D003663 ORTHO05D010021 8.8e-07 58.5 85 38.8
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 8.8e-07 58.5 76 52.6
BcaNung02824 Brassica carinata HOM05D003663 ORTHO05D010021 1.2e-06 58.2 87 37.9
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 1.2e-06 58.2 92 53.3
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.2e-06 58.2 55 67.3
C02p59100 Brassica napus HOM05D003663 ORTHO05D010021 1.5e-06 57.8 90 38.9
BraA03t12614Z Brassica rapa HOM05D003663 ORTHO05D010021 1.5e-06 57.8 97 37.1
BraA06t26608Z Brassica rapa HOM05D007325 ORTHO05D009251 1.5e-06 57.8 78 56.4
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 1.5e-06 57.8 77 53.2
Sp2g21390 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.5e-06 57.8 67 67.2
C07p41670 Brassica napus HOM05D007325 ORTHO05D009251 2.0e-06 57.4 78 56.4
BcaB04g19233 Brassica carinata HOM05D003663 ORTHO05D010021 2.6e-06 57.0 97 37.1
CsaV3_2G007440 Cucumis sativus L. HOM05D008494 ORTHO05D010021 3.3e-06 56.6 98 39.8
THA.LOC104803108 Tarenaya hassleriana HOM05D003663 ORTHO05D010021 3.3e-06 56.6 88 36.4
BcaNung02823 Brassica carinata HOM05D007325 ORTHO05D009251 5.7e-06 55.8 78 56.4
BolC7t44702H Brassica oleracea HOM05D007325 ORTHO05D009251 5.7e-06 55.8 78 56.4
C09p06380 Brassica napus HOM05D007325 ORTHO05D009251 7.5e-06 55.5 68 61.8
A03p34380 Brassica napus HOM05D003663 ORTHO05D010021 9.7e-06 55.1 97 36.1
BolC2t11965H Brassica oleracea HOM05D003663 ORTHO05D010021 9.7e-06 55.1 97 37.1
Carub.0003s0532 Capsella rubella HOM05D003663 ORTHO05D010021 9.7e-06 55.1 95 37.9


User provided reference genes

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