Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 6.1e-88 327.4 160 100.0
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 1.1e-65 253.4 173 82.1
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 3.1e-39 165.6 174 58.6
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 2.6e-38 162.5 174 56.3
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 1.4e-28 130.2 145 53.1
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.3e-26 122.9 166 47.6
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 3.9e-26 122.1 164 47.0
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 6.7e-26 121.3 163 45.4
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 4.3e-25 118.6 158 48.1
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 1.6e-24 116.7 170 45.9
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.1e-24 116.3 154 47.4
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 4.8e-24 115.2 169 42.6
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.1e-23 114.0 155 44.5
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.6e-22 109.4 138 48.6
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 7.6e-22 107.8 155 42.6
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 3.8e-21 105.5 154 42.2
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 6.4e-21 104.8 163 42.9
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 6.4e-21 104.8 181 40.3
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 8.4e-21 104.4 179 39.1
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 5.5e-20 101.7 161 42.2
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.5e-20 101.7 148 48.0
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 5.5e-20 101.7 147 46.3
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 5.5e-20 101.7 142 41.5
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 1.6e-19 100.1 132 48.5
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 2.1e-19 99.8 158 41.8
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.1e-19 99.8 145 42.8
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 4.6e-19 98.6 151 40.4
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 4.6e-19 98.6 170 37.6
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 1.8e-18 96.7 153 43.1
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 2.3e-18 96.3 166 41.6
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.3e-18 96.3 171 35.7
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 5.1e-18 95.1 144 40.3
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 6.7e-18 94.7 172 34.3
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 8.7e-18 94.4 178 35.4
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 1.1e-17 94.0 177 36.2
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.5e-17 93.6 172 33.7
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.9e-17 93.2 171 35.1
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.9e-17 93.2 151 45.0
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 3.3e-17 92.4 107 52.3
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.3e-17 92.0 144 41.7
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 7.4e-17 91.3 160 40.6
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 7.4e-17 91.3 161 39.1
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.4e-17 91.3 154 44.2
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 7.4e-17 91.3 154 44.2
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 9.6e-17 90.9 140 42.1
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 1.3e-16 90.5 107 54.2
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 1.6e-16 90.1 160 38.8
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.1e-16 89.7 154 42.9
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 4.8e-16 88.6 143 43.4
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 8.2e-16 87.8 139 39.6
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 1.1e-15 87.4 144 39.6
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 3.1e-15 85.9 147 41.5
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 3.1e-15 85.9 151 38.4
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 4.0e-15 85.5 133 39.1
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 5.3e-15 85.1 148 35.1
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-14 84.0 156 35.3
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 1.5e-14 83.6 150 33.3
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.5e-14 83.6 140 37.9
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 1.0e-13 80.9 147 40.1
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 2.2e-13 79.7 167 35.9
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 2.2e-13 79.7 151 37.7
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.2e-13 79.7 148 37.2
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 3.8e-13 79.0 157 37.6
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 6.5e-13 78.2 174 33.9
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.1e-12 77.4 140 40.0
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 1.9e-12 76.6 142 38.7
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 1.9e-12 76.6 144 38.9
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 2.5e-12 76.3 157 33.8
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.2e-12 75.9 146 40.4
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 5.5e-12 75.1 151 35.1
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 7.1e-12 74.7 144 38.2
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.2e-11 73.9 140 35.0
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.2e-11 73.9 150 36.7
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.6e-11 73.6 142 37.3
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.1e-11 73.2 96 46.9
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 3.5e-11 72.4 143 40.6
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 4.6e-11 72.0 149 36.2
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 7.9e-11 71.2 145 35.9
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 1.0e-10 70.9 168 32.7
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-10 70.5 148 34.5
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.8e-10 70.1 142 35.2
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 5.1e-10 68.6 151 35.8
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.7e-10 68.2 145 34.5
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.1e-09 67.4 152 32.9
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.1e-09 67.4 146 34.2
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 1.1e-09 67.4 132 36.4
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 1.1e-09 67.4 146 36.3
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.3e-09 65.9 145 33.8
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.3e-09 65.9 138 37.7
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 4.3e-09 65.5 154 35.7
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 4.3e-09 65.5 145 36.6
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 5.7e-09 65.1 137 33.6
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 7.4e-09 64.7 167 31.7
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 7.4e-09 64.7 130 35.4
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 1.6e-08 63.5 144 34.7
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 1.6e-08 63.5 137 32.1
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 2.2e-08 63.2 149 33.6
CsaV3_6G044310 Cucumis sativus L. HOM05D005317 ORTHO05D005146 2.2e-08 63.2 133 32.3
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 2.2e-08 63.2 162 32.1
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 2.2e-08 63.2 145 33.8
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 2.8e-08 62.8 99 44.4
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 2.8e-08 62.8 168 31.0
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 2.8e-08 62.8 139 38.1
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 4.8e-08 62.0 142 34.5
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 4.8e-08 62.0 156 33.3
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 8.2e-08 61.2 102 39.2
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 8.2e-08 61.2 177 30.5
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 1.1e-07 60.8 173 31.8
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.4e-07 60.5 126 35.7
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.4e-07 60.5 129 35.7
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 2.4e-07 59.7 157 32.5
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 2.4e-07 59.7 92 39.1
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 2.4e-07 59.7 93 36.6
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 4.1e-07 58.9 99 42.4
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 5.3e-07 58.5 138 33.3
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 5.3e-07 58.5 155 30.3
CsaV3_4G035270 Cucumis sativus L. HOM05D029900 ORTHO05D005146 6.9e-07 58.2 124 35.5
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 6.9e-07 58.2 146 31.5
PGSC0003DMG400021404 Solanum tuberosum HOM05D061607 ORTHO05D005146 6.9e-07 58.2 138 34.8
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 1.2e-06 57.4 166 34.9
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.5e-06 57.0 147 32.0
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 1.5e-06 57.0 150 32.0
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 2.6e-06 56.2 84 44.0
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 2.6e-06 56.2 135 33.3
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 2.6e-06 56.2 136 30.1
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 3.4e-06 55.8 167 31.1
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.5e-06 55.5 137 32.1
Lj5g0011909 Lotus japonicus HOM05D014755 ORTHO05D005146 4.5e-06 55.5 119 34.5
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 1.0e-05 54.3 137 35.0


User provided reference genes

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