Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004378 Carpinus fangiana HOM05D002516 ORTHO05D002703 7.6e-112 407.1 200 100.0
Haze_15034 Corylus avellana HOM05D002516 ORTHO05D002703 1.1e-46 190.7 99 99.0
CiPaw.01G049600 Carya illinoinensis HOM05D002516 ORTHO05D002703 2.9e-34 149.4 99 79.8
QL09p051749 Quercus lobata HOM05D002516 ORTHO05D002703 6.0e-32 141.7 99 74.7
QL09p052462 Quercus lobata HOM05D002516 ORTHO05D002703 6.0e-32 141.7 99 74.7
Psat7g174120 Pisum sativum HOM05D002516 ORTHO05D002703 2.2e-26 123.2 105 62.9
Ca_03039_v3 Cicer arietinum L. HOM05D002516 ORTHO05D002703 6.4e-26 121.7 108 63.0
Glyma.12G028700 Glycine max HOM05D002516 ORTHO05D002703 6.4e-26 121.7 99 63.6
Glyma.11G103800 Glycine max HOM05D002516 ORTHO05D002703 1.9e-25 120.2 99 61.6
CiPaw.02G023100 Carya illinoinensis HOM05D002516 ORTHO05D002703 2.4e-25 119.8 96 65.6
CANSAT01G2920 Cannabis sativa HOM05D002516 ORTHO05D002703 3.2e-25 119.4 100 65.0
Ciclev10022263m.g Citrus clementina HOM05D002516 ORTHO05D002703 5.4e-25 118.6 99 69.7
Atru.chr2.3423 Acer truncatum HOM05D002516 ORTHO05D002703 9.2e-25 117.9 100 67.0
CANSAT01G0325 Cannabis sativa HOM05D002516 ORTHO05D002703 1.2e-24 117.5 100 64.0
Atru.chr6.1421 Acer truncatum HOM05D002516 ORTHO05D002703 2.0e-24 116.7 100 66.0
Duzib133G1084 Durio zibethinus HOM05D002516 ORTHO05D002703 6.0e-24 115.2 97 63.9
Duzib138G0225 Durio zibethinus HOM05D002516 ORTHO05D002703 6.0e-24 115.2 97 63.9
VMungo1127G1407 Vigna mungo HOM05D002516 ORTHO05D002703 1.0e-23 114.4 99 61.6
Prupe.8G199600 Prunus persica HOM05D002516 ORTHO05D002703 2.3e-23 113.2 99 64.6
Gohir.A11G139500 Gossypium hirsutum HOM05D002516 ORTHO05D002703 3.9e-23 112.5 97 63.9
Gohir.D11G145700 Gossypium hirsutum HOM05D002516 ORTHO05D002703 6.6e-23 111.7 97 62.9
Gorai.007G156200 Gossypium raimondii HOM05D002516 ORTHO05D002703 6.6e-23 111.7 97 62.9
Dinv19179 Davidia involucrata HOM05D002516 ORTHO05D002703 8.6e-23 111.3 103 63.1
Phvul.011G032000 Phaseolus vulgaris HOM05D002516 ORTHO05D002703 8.6e-23 111.3 99 59.6
Gohir.A07G158100 Gossypium hirsutum HOM05D002516 ORTHO05D002703 9.5e-22 107.8 97 60.8
Sed0020045 Sechium edule HOM05D002516 ORTHO05D002703 9.5e-22 107.8 104 58.7
MELO3C022715.2 Cucumis melo HOM05D002516 ORTHO05D002703 1.6e-21 107.1 97 59.8
CsaV3_3G030010 Cucumis sativus L. HOM05D002516 ORTHO05D002703 1.6e-21 107.1 97 59.8
Duzib211G0537 Durio zibethinus HOM05D002516 ORTHO05D002703 2.1e-21 106.7 98 65.3
Nitab4.5_0000045g0450 Nicotiana tabacum HOM05D002516 ORTHO05D002703 2.1e-21 106.7 101 56.4
Lalb_Chr19g0139301 Lupinus albus HOM05D002516 ORTHO05D002703 8.1e-21 104.8 122 51.6
Manes.13G049000 Manihot esculenta HOM05D002516 ORTHO05D002703 8.1e-21 104.8 106 59.4
Nitab4.5_0002641g0170 Nicotiana tabacum HOM05D002516 ORTHO05D002703 8.1e-21 104.8 102 60.8
Peaxi162Scf00238g00046 Petunia axillaris HOM05D002516 ORTHO05D002703 1.1e-20 104.4 98 58.2
Thecc.01G221100 Theobroma cacao HOM05D002516 ORTHO05D002703 1.1e-20 104.4 102 60.8
Nitab4.5_0007846g0010 Nicotiana tabacum HOM05D002516 ORTHO05D002703 1.4e-20 104.0 98 58.2
ClCG07G002050 Citrullus lanatus HOM05D002516 ORTHO05D002703 1.8e-20 103.6 97 58.8
Gorai.001G188100 Gossypium raimondii HOM05D002516 ORTHO05D002703 1.8e-20 103.6 97 58.8
Manes.12G046900 Manihot esculenta HOM05D002516 ORTHO05D002703 1.8e-20 103.6 106 59.4
CSS0033368 Camellia sinensis var. sinensis HOM05D002516 ORTHO05D002703 2.3e-20 103.2 103 59.2
Dinv12654 Davidia involucrata HOM05D002516 ORTHO05D002703 2.3e-20 103.2 102 59.8
Hma1.2p1_0149F.1_g066360 Hydrangea macrophylla HOM05D002516 ORTHO05D002703 2.3e-20 103.2 103 60.2
Hma1.2p1_0226F.1_g095436 Hydrangea macrophylla HOM05D002516 ORTHO05D002703 2.3e-20 103.2 103 60.2
Eucgr.K02140 Eucalyptus grandis HOM05D002516 ORTHO05D002703 5.2e-20 102.1 96 59.4
Nitab4.5_0002616g0040 Nicotiana tabacum HOM05D002516 ORTHO05D002703 1.2e-19 100.9 102 59.8
Gohir.A07G199400 Gossypium hirsutum HOM05D002516 ORTHO05D002703 1.5e-19 100.5 97 56.7
TAR365G0852 Trochodendron aralioides HOM05D002516 ORTHO05D002703 1.5e-19 100.5 102 53.9
Gorai.001G231800 Gossypium raimondii HOM05D002516 ORTHO05D002703 2.0e-19 100.1 97 56.7
Hma1.2p1_2668F.1_g326570 Hydrangea macrophylla HOM05D002516 ORTHO05D002703 2.0e-19 100.1 103 59.2
Actinidia09470 Actinidia chinensis HOM05D002516 ORTHO05D002703 2.6e-19 99.8 103 58.3
TWI18G0693 Tripterygium wilfordii HOM05D002516 ORTHO05D002703 2.6e-19 99.8 97 55.7
arahy.Tifrunner.gnm1.ann1.7060PQ Arachis hypogaea HOM05D002516 ORTHO05D002703 5.8e-19 98.6 110 53.6
arahy.Tifrunner.gnm1.ann1.WSZ24T Arachis hypogaea HOM05D002516 ORTHO05D002703 5.8e-19 98.6 110 53.6
TPR.G21567 Trifolium pratense HOM05D002516 ORTHO05D002703 5.8e-19 98.6 112 55.4
RcHm_v2.0_Chr6g0284181 Rosa chinensis HOM05D002516 ORTHO05D002703 7.5e-19 98.2 98 58.2
Gohir.D07G205800 Gossypium hirsutum HOM05D002516 ORTHO05D002703 9.9e-19 97.8 97 55.7
Potri.014G191400 Populus trichocarpa HOM05D002516 ORTHO05D002703 9.9e-19 97.8 100 53.0
Cpa.g.sc8.125 Carica papaya HOM05D002516 ORTHO05D002703 1.7e-18 97.1 99 54.5
Rhsim13G0047300 Rhododendron simsii HOM05D002516 ORTHO05D002703 1.7e-18 97.1 103 56.3
TWI75G1449 Tripterygium wilfordii HOM05D002516 ORTHO05D002703 2.9e-18 96.3 97 52.6
PGSC0003DMG400003404 Solanum tuberosum HOM05D002516 ORTHO05D002703 3.7e-18 95.9 88 60.2
Lalb_Chr03g0024911 Lupinus albus HOM05D002516 ORTHO05D002703 8.3e-18 94.7 117 49.6
CSS0005528 Camellia sinensis var. sinensis HOM05D002516 ORTHO05D002703 1.4e-17 94.0 105 55.2
Actinidia39434 Actinidia chinensis HOM05D002516 ORTHO05D002703 2.4e-17 93.2 103 55.3
Solyc09g059450.4 Solanum lycopersicum HOM05D002516 ORTHO05D002703 3.2e-17 92.8 103 55.3
Sopen09g022610 Solanum pennellii HOM05D002516 ORTHO05D002703 3.2e-17 92.8 103 55.3
Oeu007786.2 Olea europaea HOM05D002516 ORTHO05D002703 4.1e-17 92.4 84 59.5
PGSC0003DMG400027947 Solanum tuberosum HOM05D002516 ORTHO05D002703 4.1e-17 92.4 111 52.3
vmacro02780 Vaccinium macrocarpon HOM05D002516 ORTHO05D002703 4.1e-17 92.4 104 53.8
Sopen06g002720 Solanum pennellii HOM05D002516 ORTHO05D002703 5.4e-17 92.0 88 59.1
Lj3g0007155 Lotus japonicus HOM05D002516 ORTHO05D002703 7.1e-17 91.7 117 47.0
Solyc06g007870.3 Solanum lycopersicum HOM05D002516 ORTHO05D002703 7.1e-17 91.7 88 59.1
Nn1g07949 Nelumbo nucifera HOM05D002516 ORTHO05D002703 1.2e-16 90.9 86 57.0
vmacro14740 Vaccinium macrocarpon HOM05D002516 ORTHO05D002703 1.6e-16 90.5 103 53.4
Oeu051536.1 Olea europaea HOM05D002516 ORTHO05D002703 2.1e-16 90.1 81 56.8
TWI36G0113 Tripterygium wilfordii HOM05D002516 ORTHO05D002703 2.1e-16 90.1 99 55.6
MSTRG.18838 Avicennia marina HOM05D002516 ORTHO05D002703 2.7e-16 89.7 80 61.2
Actinidia30057 Actinidia chinensis HOM05D002516 ORTHO05D002703 1.0e-15 87.8 102 53.9
Cc01_g16770 Coffea canephora HOM05D002516 ORTHO05D002703 1.3e-15 87.4 99 55.6
MD05G1172100 Malus domestica HOM05D002516 ORTHO05D002703 2.3e-15 86.7 98 59.2
Rhsim01G0254000 Rhododendron simsii HOM05D002516 ORTHO05D002703 2.3e-15 86.7 99 54.5
Medtr4g074240 Medicago truncatula HOM05D002516 ORTHO05D002703 3.9e-15 85.9 133 43.6
SGA_v2.0_scaffold6G03500 Striga asiatica HOM05D002516 ORTHO05D002703 1.5e-14 84.0 84 53.6
Nn3g20050 Nelumbo nucifera HOM05D002516 ORTHO05D002703 1.9e-14 83.6 86 53.5
TAR636G2916 Trochodendron aralioides HOM05D002516 ORTHO05D002703 2.5e-14 83.2 97 52.6
Hund05574 Selenicereus undatus HOM05D002516 ORTHO05D002703 3.3e-14 82.8 107 52.3
Potri.002G245500 Populus trichocarpa HOM05D002516 ORTHO05D002703 4.3e-14 82.4 108 50.0
unitig_899.g15409 Utricularia gibba HOM05D002516 ORTHO05D002703 1.2e-13 80.9 93 50.5
FvH4_2g18620 Fragaria vesca HOM05D002516 ORTHO05D002703 4.7e-13 79.0 85 51.8
Sabra02G0186800 Salix brachista HOM05D002516 ORTHO05D002703 4.7e-13 79.0 96 53.1
FAN15G3756 Fragaria x ananassa HOM05D002516 ORTHO05D002703 8.1e-13 78.2 85 50.6
FAN27G2188 Fragaria x ananassa HOM05D002516 ORTHO05D002703 1.4e-12 77.4 85 52.9
FAN24G0368 Fragaria x ananassa HOM05D002516 ORTHO05D002703 2.4e-12 76.6 85 50.6
Sed0010115 Sechium edule HOM05D002516 ORTHO05D002703 5.2e-12 75.5 99 50.5
AUR62001129 Chenopodium quinoa HOM05D002516 ORTHO05D002703 8.9e-12 74.7 106 45.3
Migut.D02502 Erythranthe guttata HOM05D002516 ORTHO05D002703 1.5e-11 73.9 87 54.0
Lj1C88T6 Lonicera japonica HOM05D002516 ORTHO05D002703 1.5e-11 73.9 107 50.5
PGR083G1441 Punica granatum HOM05D002516 ORTHO05D002703 1.5e-11 73.9 98 49.0
PGR044G0119 Punica granatum HOM05D002516 ORTHO05D002703 2.0e-11 73.6 82 53.7
TAR362G0418 Trochodendron aralioides HOM05D002516 ORTHO05D002703 2.6e-11 73.2 99 48.5
Sc17g0002160 Simmondsia chinensis HOM05D002516 ORTHO05D002703 3.4e-11 72.8 117 47.0
AUR62016552 Chenopodium quinoa HOM05D002516 ORTHO05D002703 7.6e-11 71.6 106 45.3
Gohir.D07G164200 Gossypium hirsutum HOM05D002516 ORTHO05D002703 1.3e-10 70.9 102 44.1
MBI07_g22277_MAGBIO Magnolia biondii HOM05D002516 ORTHO05D002703 1.7e-10 70.5 106 43.4
Thhalv10004921m.g Eutrema salsugineum HOM05D002516 ORTHO05D002703 2.2e-10 70.1 105 45.7
EL10Ac7g17892 Beta vulgaris HOM05D002516 ORTHO05D002703 2.9e-10 69.7 107 48.6
Lsat_1_v5_gn_8_89640 Lactuca sativa HOM05D002516 ORTHO05D002703 3.8e-10 69.3 112 42.9
DCAR_004734 Daucus carota HOM05D002516 ORTHO05D002703 4.9e-10 68.9 103 47.6
SHI14525 Sapria himalayana HOM05D002516 ORTHO05D002703 4.9e-10 68.9 100 46.0
CARHR183280 Cardamine hirsuta HOM05D002516 ORTHO05D002703 8.4e-10 68.2 86 50.0
COL.COLO4_15625 Corchorus olitorius HOM05D002516 ORTHO05D002703 1.1e-09 67.8 92 52.2
Peaxi162Scf00372g01213 Petunia axillaris HOM05D002516 ORTHO05D002703 1.4e-09 67.4 101 46.5
AL8G21690 Arabidopsis lyrata HOM05D002516 ORTHO05D002703 4.1e-09 65.9 87 51.7
Sp2g19060 Schrenkiella parvula HOM05D002516 ORTHO05D002703 4.1e-09 65.9 96 47.9
THA.LOC104818971 Tarenaya hassleriana HOM05D002516 ORTHO05D002703 5.4e-09 65.5 101 46.5
HanXRQChr10g0279491 Helianthus annuus HOM05D002516 ORTHO05D002703 7.1e-09 65.1 98 43.9
A06p39020 Brassica napus HOM05D002516 ORTHO05D002703 9.2e-09 64.7 103 46.6
BolC7t44452H Brassica oleracea HOM05D002516 ORTHO05D002703 9.2e-09 64.7 103 47.6
BraA06t26815Z Brassica rapa HOM05D002516 ORTHO05D002703 9.2e-09 64.7 103 46.6
BcaC06g30772 Brassica carinata HOM05D002516 ORTHO05D002703 1.2e-08 64.3 103 46.6
Hund18428 Selenicereus undatus HOM05D002516 ORTHO05D002703 1.2e-08 64.3 89 44.9
BraA09t36093Z Brassica rapa HOM05D002516 ORTHO05D002703 1.6e-08 63.9 107 43.0
C07p39320 Brassica napus HOM05D002516 ORTHO05D002703 2.1e-08 63.5 103 45.6
AT5G48655 Arabidopsis thaliana HOM05D002516 ORTHO05D002703 2.7e-08 63.2 87 50.6
BcaC04g23768 Brassica carinata HOM05D002516 ORTHO05D002703 4.6e-08 62.4 112 46.4
Lsat_1_v5_gn_9_15241 Lactuca sativa HOM05D002516 ORTHO05D002703 4.6e-08 62.4 89 47.2
GSVIVG01007471001 Vitis vinifera HOM05D002516 ORTHO05D002703 4.6e-08 62.4 41 73.2
C09p04890 Brassica napus HOM05D002516 ORTHO05D002703 6.0e-08 62.0 136 41.2
Aa31sc675G30 Aethionema arabicum HOM05D002516 ORTHO05D002703 7.8e-08 61.6 119 39.5
BolC9t53417H Brassica oleracea HOM05D002516 ORTHO05D002703 1.0e-07 61.2 98 46.9
THA.LOC104822495 Tarenaya hassleriana HOM05D002516 ORTHO05D002703 1.3e-07 60.8 105 42.9
A09p04580 Brassica napus HOM05D002516 ORTHO05D002703 3.9e-07 59.3 98 43.9
BcaB07g30039 Brassica carinata HOM05D002516 ORTHO05D002703 6.6e-07 58.5 76 52.6
Lalb_Chr10g0095071 Lupinus albus HOM05D002516 ORTHO05D002703 6.6e-07 58.5 92 44.6
DCAR_012667 Daucus carota HOM05D002516 ORTHO05D002703 8.7e-07 58.2 102 45.1
HanXRQChr07g0189501 Helianthus annuus HOM05D002516 ORTHO05D002703 8.7e-07 58.2 113 42.5
Glyma.09G281300 Glycine max HOM05D002516 ORTHO05D002703 1.5e-06 57.4 94 43.6
unitig_746.g26592 Utricularia gibba HOM05D002516 ORTHO05D002703 1.5e-06 57.4 66 50.0
Cfa014951 Carpinus fangiana HOM05D002516 ORTHO05D002703 4.3e-06 55.8 77 44.2
Aqoxy2G04001 Aquilegia oxysepala HOM05D002516 ORTHO05D002703 7.3e-06 55.1 112 34.8
Carub.0008s0834 Capsella rubella HOM05D002516 ORTHO05D002703 9.6e-06 54.7 111 40.5
GSVIVG01020997001 Vitis vinifera HOM05D002516 ORTHO05D002703 9.6e-06 54.7 112 40.2


User provided reference genes

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