Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 0.0e+00 1125.9 592 100.0
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 0.0e+00 1107.4 584 99.5
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.4e-307 1058.9 592 92.7
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 3.2e-307 1057.7 592 92.2
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 3.4e-301 1037.7 594 91.6
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 3.0e-297 1024.6 594 87.5
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 6.9e-294 1013.4 596 89.3
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.4e-293 1010.7 593 86.7
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 9.9e-293 1009.6 598 88.5
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 9.9e-293 1009.6 593 86.8
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.2e-292 1008.4 598 89.8
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 2.2e-292 1008.4 594 89.1
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 5.4e-291 1003.8 596 88.4
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.2e-290 1002.7 594 87.0
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.6e-290 1002.3 594 87.9
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 4.6e-290 1000.7 597 87.8
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 3.3e-288 994.6 594 86.9
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 3.3e-288 994.6 594 87.5
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 9.9e-285 983.0 600 86.5
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 2.9e-284 981.5 594 86.7
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 3.8e-284 981.1 593 86.5
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.9e-283 978.8 593 88.2
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 7.1e-283 976.9 594 86.0
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.6e-282 975.7 594 85.9
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 5.1e-281 970.7 597 84.8
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.1e-280 969.5 598 83.9
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 3.3e-280 968.0 592 83.4
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 8.1e-279 963.4 595 84.4
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 5.3e-278 960.7 593 82.5
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 2.6e-277 958.4 600 83.0
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.5e-277 957.6 600 83.0
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 5.8e-277 957.2 600 82.8
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.3e-276 956.1 594 84.7
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.3e-276 956.1 594 84.7
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.9e-276 954.1 598 82.4
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 1.4e-275 952.6 608 81.4
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 7.1e-275 950.3 600 83.3
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 4.6e-274 947.6 598 83.1
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 2.3e-273 945.3 588 82.1
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.9e-273 944.5 597 81.6
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 8.7e-273 943.3 600 81.0
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.1e-272 943.0 600 81.0
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.1e-272 943.0 600 81.3
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 5.6e-272 940.6 606 81.0
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 7.4e-272 940.3 605 78.2
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.1e-271 938.7 605 78.0
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.1e-270 934.9 602 80.1
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 6.9e-270 933.7 600 80.7
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.5e-269 932.6 607 82.0
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 3.8e-268 927.9 598 80.4
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 8.4e-268 926.8 595 81.5
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 8.4e-268 926.8 594 81.3
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 8.4e-268 926.8 593 81.5
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.4e-267 926.0 606 81.0
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.5e-267 925.2 594 80.6
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 4.2e-267 924.5 594 80.8
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 5.5e-267 924.1 594 80.5
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 9.3e-267 923.3 594 81.0
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 1.6e-266 922.5 593 79.9
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 3.5e-266 921.4 594 80.5
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.3e-265 919.5 594 80.6
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 6.7e-265 917.1 597 79.1
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 6.7e-265 917.1 601 80.2
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.3e-263 912.9 596 80.4
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.3e-263 912.9 601 78.4
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 1.1e-262 909.8 597 79.2
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.8e-262 909.1 594 78.1
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.8e-262 909.1 594 78.1
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 2.4e-262 908.7 597 80.1
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 9.0e-262 906.7 600 78.8
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 4.5e-261 904.4 593 79.1
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 7.6e-261 903.7 597 78.7
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.2e-260 902.1 601 79.4
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 3.8e-260 901.4 598 79.3
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.2e-258 896.3 595 79.2
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.6e-258 896.0 596 78.7
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.6e-258 896.0 596 78.7
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.6e-258 896.0 596 78.7
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 2.1e-258 895.6 594 80.3
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.7e-258 895.2 607 77.4
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 6.1e-258 894.0 597 78.2
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 2.3e-257 892.1 599 79.3
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 3.9e-257 891.3 585 79.0
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 6.7e-257 890.6 605 76.2
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 6.7e-257 890.6 600 78.5
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 8.8e-257 890.2 615 76.9
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 1.1e-256 889.8 594 76.4
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.1e-256 889.8 609 77.2
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.5e-256 889.4 594 76.1
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 1.9e-256 889.0 591 77.7
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.3e-255 886.3 595 77.8
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.3e-255 886.3 592 76.5
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 2.8e-255 885.2 603 76.8
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 8.2e-255 883.6 593 79.1
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 3.1e-254 881.7 592 76.7
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 5.3e-254 880.9 591 77.5
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 1.4e-249 866.3 597 74.9
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 1.4e-249 866.3 591 77.3
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 2.3e-249 865.5 604 75.8
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 2.3e-249 865.5 597 75.7
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 2.6e-248 862.1 601 76.2
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.8e-246 855.9 597 77.7
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 1.0e-241 840.1 601 74.7
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 6.7e-241 837.4 644 71.4
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.0e-240 835.9 592 73.1
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 3.7e-239 831.6 544 78.7
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 1.8e-238 829.3 605 73.7
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 3.1e-238 828.6 546 75.6
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 4.2e-235 818.1 595 74.1
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-233 813.5 599 72.6
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.6e-232 808.9 601 72.7
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.3e-232 808.5 612 71.2
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 2.2e-231 805.8 869 54.4
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.8e-231 805.4 612 71.1
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.0e-228 797.0 594 73.1
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.1e-226 789.3 617 69.0
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.9e-220 768.8 592 69.9
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.9e-219 766.1 596 67.8
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.2e-210 736.9 566 69.4
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-204 717.2 476 80.5
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.4e-184 648.7 597 61.3
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.3e-183 647.1 441 78.2
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 6.4e-175 618.2 519 68.0
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.1e-161 574.3 593 52.8
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.4e-161 573.9 602 51.7
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 2.7e-157 559.7 597 54.6
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 3.7e-146 522.7 597 53.9
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 1.4e-137 494.2 613 45.4
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.6e-131 473.4 583 47.2
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.2e-93 348.2 209 80.9
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.0e-92 345.1 243 70.8
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 9.5e-86 322.0 322 55.3
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 3.9e-79 300.1 630 35.9
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 5.8e-75 286.2 232 70.3
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 6.8e-68 262.7 268 57.1
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.1e-60 238.8 585 29.2
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 4.3e-54 216.9 148 75.0
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.9e-50 204.1 151 70.9
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.5e-35 153.7 201 46.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 9.3e-33 146.0 98 72.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.8e-31 141.7 623 26.5
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 3.8e-26 124.0 79 72.2
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 3.2e-25 120.9 79 70.9
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 2.0e-22 111.7 208 48.6
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 4.3e-22 110.5 68 72.1
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 2.2e-18 98.2 114 44.7
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.3e-14 84.3 59 72.9
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 2.4e-12 78.2 90 46.7
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 7.7e-11 73.2 93 44.1


User provided reference genes

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