Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 2374.0 1176 100.0
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1693.7 1041 81.6
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1615.1 1074 77.1
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1576.2 1035 74.3
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1558.5 1060 73.0
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1553.9 1048 71.6
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1536.9 1050 71.1
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1536.5 1034 72.5
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1536.5 1050 71.6
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1533.5 1037 72.2
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1516.9 1048 71.0
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1514.6 1045 70.3
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1512.7 1052 70.2
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1509.2 1048 69.8
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1502.6 1048 70.0
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1491.9 1051 69.8
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1490.3 1052 70.5
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1483.0 1050 69.2
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1472.6 1040 70.0
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1471.1 1044 69.3
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1468.0 1050 68.8
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1464.5 1041 69.1
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1462.6 1048 68.3
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1461.4 1041 68.6
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1461.0 1045 68.7
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1458.7 1052 68.3
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1458.0 1040 68.9
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1456.4 1050 68.5
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1444.5 1037 68.9
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1438.7 1041 69.4
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1438.7 1043 67.8
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1437.6 1041 69.3
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1436.4 1044 68.4
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1436.0 1044 69.0
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1432.2 1040 68.7
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1432.2 1042 67.2
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1424.5 1043 66.8
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1423.7 1048 68.6
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1423.7 1042 67.1
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1422.1 1043 67.7
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1422.1 1034 68.5
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1416.0 1055 67.5
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1415.6 1055 65.5
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1410.6 1165 61.8
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1400.2 1054 67.0
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1399.0 1040 65.6
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1395.2 1049 65.6
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1392.9 1042 67.2
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1389.0 1040 64.3
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1380.2 1040 64.4
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1377.5 1040 64.1
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1375.5 1037 65.6
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1369.8 1053 65.4
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1367.8 1041 64.3
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1362.8 1039 63.3
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1362.4 1014 66.1
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1360.1 1041 63.6
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1357.4 1055 63.5
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1354.3 1041 63.3
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1352.8 1041 63.8
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1352.4 1054 63.3
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1351.3 1041 63.7
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1345.5 1096 62.0
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1340.9 1043 64.2
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1340.9 1077 64.0
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1337.4 1048 62.3
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1323.5 1084 62.0
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1322.4 1089 60.5
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1318.9 1048 60.9
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1316.2 1034 64.4
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1309.7 1075 61.5
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1307.7 1051 61.3
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 0.0e+00 1305.0 884 78.1
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1300.8 1123 58.9
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1295.8 1051 61.6
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1291.9 1075 61.4
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1275.0 1043 60.6
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1274.2 1038 59.8
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1267.3 1048 59.4
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1262.7 1038 60.4
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1258.8 1038 60.2
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1254.6 1178 56.8
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1251.5 1040 59.6
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1248.8 843 72.1
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1202.6 1048 57.9
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1199.5 1049 58.5
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1196.4 1048 58.9
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1171.4 1125 55.1
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1169.8 1045 56.3
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1146.7 1124 53.4
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1146.3 1045 56.1
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 0.0e+00 1098.6 870 62.6
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 2.0e-308 1062.8 1043 54.0
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 1.7e-288 996.5 910 56.8
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.2e-283 979.5 1027 48.8
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 1.4e-277 960.3 672 69.5
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.6e-254 883.6 1051 46.2
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.2e-236 824.3 1027 43.0
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 1.1e-234 817.8 737 56.7
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 9.0e-229 798.1 708 57.1
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 7.6e-212 741.9 724 54.0
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 7.9e-209 731.9 510 70.0
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 3.0e-208 729.9 534 68.5
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.7e-206 724.2 701 50.9
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 8.8e-200 701.8 824 47.8
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 9.7e-199 698.4 490 72.2
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 4.8e-198 696.0 668 53.3
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 1.1e-186 658.3 514 61.9
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.0e-184 651.7 438 75.6
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 1.3e-182 644.8 835 41.4
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 2.2e-179 634.0 598 55.4
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 5.2e-176 622.9 990 37.6
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.5e-175 621.3 1026 39.2
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 5.7e-175 619.4 839 40.2
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 5.0e-163 579.7 375 75.5
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 8.9e-160 568.9 513 55.0
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 3.5e-132 477.2 351 66.1
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 5.3e-120 436.8 341 62.8
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 8.4e-118 429.5 455 49.5
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 2.7e-116 424.5 846 33.6
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.8e-107 395.2 351 58.7
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 5.0e-86 323.9 1129 26.8
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 5.1e-83 313.9 259 62.5
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 4.4e-74 284.3 281 53.7
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 9.7e-74 283.1 417 42.2
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 3.7e-73 281.2 220 63.2
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 4.1e-72 277.7 177 76.3
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 4.0e-67 261.2 1119 25.3
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 5.2e-67 260.8 503 35.2
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 2.6e-66 258.5 264 51.9
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 4.4e-66 257.7 210 59.5
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 8.0e-60 236.9 369 40.9
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.0e-59 236.5 166 63.3
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 4.0e-59 234.6 312 43.3
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 3.7e-57 228.0 201 56.2
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 8.3e-57 226.9 1130 24.2
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 8.6e-54 216.9 126 85.7
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 7.8e-47 193.7 207 49.8
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 5.2e-35 154.5 113 69.9
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 1.3e-33 149.8 95 81.1
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 4.6e-31 141.4 89 76.4
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 1.9e-29 136.0 87 77.0
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 1.2e-28 133.3 317 30.0
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 1.2e-28 133.3 156 50.0
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 2.1e-28 132.5 162 40.7
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.8e-27 129.4 102 64.7
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.1e-27 128.6 187 39.6
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 7.6e-26 124.0 154 46.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 7.1e-24 117.5 71 70.4
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 5.8e-18 97.8 70 64.3
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 4.9e-17 94.7 70 67.1
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 4.3e-13 81.6 114 43.0
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 4.3e-13 81.6 80 42.5
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 2.6e-10 72.4 83 47.0
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 6.4e-09 67.8 45 71.1
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 8.4e-09 67.4 58 55.2
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 1.3e-06 60.1 75 49.3
Lsat_1_v5_gn_5_99100 Lactuca sativa HOM05D000032 ORTHO05D015646 2.3e-06 59.3 53 56.6


User provided reference genes

Program Settings