Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004293 Carpinus fangiana HOM05D007518 ORTHO05D008168 2.7e-125 452.2 267 100.0
Cfa004294 Carpinus fangiana HOM05D007518 ORTHO05D008168 6.3e-53 211.8 166 92.8
Haze_15107 Corylus avellana HOM05D007518 ORTHO05D008168 2.1e-48 196.8 165 91.5
CiPaw.02G016200 Carya illinoinensis HOM05D007518 ORTHO05D008168 1.1e-46 191.0 164 86.6
QL06p045656 Quercus lobata HOM05D007518 ORTHO05D008168 4.1e-44 182.6 163 82.8
Thecc.01G037800 Theobroma cacao HOM05D007518 ORTHO05D008168 1.4e-36 157.5 166 74.7
Atru.chr3.555 Acer truncatum HOM05D007518 ORTHO05D008168 1.8e-36 157.1 168 73.2
Glyma.11G067100 Glycine max HOM05D007518 ORTHO05D008168 1.5e-35 154.1 165 75.8
CSS0014655 Camellia sinensis var. sinensis HOM05D007518 ORTHO05D008168 2.0e-35 153.7 166 76.5
Prupe.7G152700 Prunus persica HOM05D007518 ORTHO05D008168 3.4e-35 152.9 166 72.9
arahy.Tifrunner.gnm1.ann1.5UMV3I Arachis hypogaea HOM05D007518 ORTHO05D008168 4.5e-35 152.5 171 74.3
Gohir.D03G015500 Gossypium hirsutum HOM05D007518 ORTHO05D008168 5.9e-35 152.1 166 71.7
Gorai.003G015700 Gossypium raimondii HOM05D007518 ORTHO05D008168 5.9e-35 152.1 166 71.7
TWI53G0381 Tripterygium wilfordii HOM05D007518 ORTHO05D008168 7.7e-35 151.8 166 74.1
arahy.Tifrunner.gnm1.ann1.RRU65L Arachis hypogaea HOM05D007518 ORTHO05D008168 1.0e-34 151.4 165 75.8
CANSAT01G2215 Cannabis sativa HOM05D007518 ORTHO05D008168 1.0e-34 151.4 167 74.9
Lj2g0015504 Lotus japonicus HOM05D007518 ORTHO05D008168 1.7e-34 150.6 165 75.8
Gohir.A02G164600 Gossypium hirsutum HOM05D007518 ORTHO05D008168 5.0e-34 149.1 166 71.1
Nn1g05049 Nelumbo nucifera HOM05D007518 ORTHO05D008168 5.0e-34 149.1 166 72.9
Sabra07G0023900 Salix brachista HOM05D007518 ORTHO05D008168 5.0e-34 149.1 165 73.3
Potri.007G027400 Populus trichocarpa HOM05D007518 ORTHO05D008168 8.5e-34 148.3 164 72.0
Medtr5g019920 Medicago truncatula HOM05D007518 ORTHO05D008168 1.4e-33 147.5 169 75.7
COL.COLO4_22099 Corchorus olitorius HOM05D007518 ORTHO05D008168 1.9e-33 147.1 168 72.0
Lalb_Chr09g0322501 Lupinus albus HOM05D007518 ORTHO05D008168 2.5e-33 146.7 164 72.6
TPR.G28676 Trifolium pratense HOM05D007518 ORTHO05D008168 2.5e-33 146.7 169 73.4
Manes.01G134000 Manihot esculenta HOM05D007518 ORTHO05D008168 3.2e-33 146.4 165 70.3
TAR628G0256 Trochodendron aralioides HOM05D007518 ORTHO05D008168 3.2e-33 146.4 168 72.6
VMungo1215G2461 Vigna mungo HOM05D007518 ORTHO05D008168 5.5e-33 145.6 134 81.3
Eucgr.I02457 Eucalyptus grandis HOM05D007518 ORTHO05D008168 9.4e-33 144.8 166 72.3
MD02G1150400 Malus domestica HOM05D007518 ORTHO05D008168 9.4e-33 144.8 164 72.6
Aqoxy6G01075 Aquilegia oxysepala HOM05D007518 ORTHO05D008168 1.6e-32 144.1 164 72.6
MELO3C007820.2 Cucumis melo HOM05D007518 ORTHO05D008168 2.1e-32 143.7 163 74.2
FvH4_1g13510 Fragaria vesca HOM05D007518 ORTHO05D008168 2.7e-32 143.3 166 70.5
FAN19G2612 Fragaria x ananassa HOM05D007518 ORTHO05D008168 2.7e-32 143.3 166 70.5
MD15G1264900 Malus domestica HOM05D007518 ORTHO05D008168 2.7e-32 143.3 167 71.9
FAN28G1656 Fragaria x ananassa HOM05D007518 ORTHO05D008168 4.7e-32 142.5 166 69.9
PGR119G2546 Punica granatum HOM05D007518 ORTHO05D008168 4.7e-32 142.5 165 70.3
MBI16_g37747_MAGBIO Magnolia biondii HOM05D007518 ORTHO05D008168 6.1e-32 142.1 167 73.1
CsaV3_6G046170 Cucumis sativus L. HOM05D007518 ORTHO05D008168 2.3e-31 140.2 134 81.3
Phvul.002G029100 Phaseolus vulgaris HOM05D007518 ORTHO05D008168 2.3e-31 140.2 167 70.1
RcHm_v2.0_Chr2g0101891 Rosa chinensis HOM05D007518 ORTHO05D008168 2.3e-31 140.2 163 71.8
Thhalv10010782m.g Eutrema salsugineum HOM05D007518 ORTHO05D008168 3.0e-31 139.8 161 72.0
Sed0026205 Sechium edule HOM05D007518 ORTHO05D008168 3.9e-31 139.4 135 80.7
Lsat_1_v5_gn_3_78660 Lactuca sativa HOM05D007518 ORTHO05D008168 5.1e-31 139.0 170 68.2
Ciclev10026615m.g Citrus clementina HOM05D007518 ORTHO05D008168 6.7e-31 138.7 134 80.6
C05p06340 Brassica napus HOM05D007518 ORTHO05D008168 3.3e-30 136.3 161 70.8
Migut.L00282 Erythranthe guttata HOM05D007518 ORTHO05D008168 3.3e-30 136.3 163 70.6
AL5G30840 Arabidopsis lyrata HOM05D007518 ORTHO05D008168 4.4e-30 136.0 163 72.4
Aa31LG4G18840 Aethionema arabicum HOM05D007518 ORTHO05D008168 5.7e-30 135.6 164 70.1
Ca_00386_v3 Cicer arietinum L. HOM05D007518 ORTHO05D008168 5.7e-30 135.6 129 68.2
PSO675G1394 Papaver somniferum HOM05D007518 ORTHO05D008168 5.7e-30 135.6 170 68.2
Rhsim10G0067800 Rhododendron simsii HOM05D007518 ORTHO05D008168 5.7e-30 135.6 170 71.2
AT3G50685 Arabidopsis thaliana HOM05D007518 ORTHO05D008168 7.4e-30 135.2 163 71.8
Carub.0005s1701 Capsella rubella HOM05D007518 ORTHO05D008168 7.4e-30 135.2 159 69.8
BolC5t29390H Brassica oleracea HOM05D007518 ORTHO05D008168 1.7e-29 134.0 161 70.2
AUR62003171 Chenopodium quinoa HOM05D007518 ORTHO05D008168 2.2e-29 133.7 165 67.9
Cc07_g09360 Coffea canephora HOM05D007518 ORTHO05D008168 2.2e-29 133.7 168 69.0
THA.LOC104821280 Tarenaya hassleriana HOM05D007518 ORTHO05D008168 2.2e-29 133.7 161 68.9
A06p05270 Brassica napus HOM05D007518 ORTHO05D008168 3.7e-29 132.9 161 69.6
BraA06t23735Z Brassica rapa HOM05D007518 ORTHO05D008168 3.7e-29 132.9 161 69.6
PSO541G1957 Papaver somniferum HOM05D007518 ORTHO05D008168 3.7e-29 132.9 170 67.6
Sp5g11540 Schrenkiella parvula HOM05D007518 ORTHO05D008168 4.8e-29 132.5 162 68.5
Oeu007443.1 Olea europaea HOM05D007518 ORTHO05D008168 8.2e-29 131.7 166 69.9
Solyc03g034070.1 Solanum lycopersicum HOM05D007518 ORTHO05D008168 1.1e-28 131.3 115 88.7
Sopen03g006850 Solanum pennellii HOM05D007518 ORTHO05D008168 1.1e-28 131.3 115 88.7
CAN.G1028.6 Capsicum annuum HOM05D007518 ORTHO05D008168 1.4e-28 131.0 134 76.9
CARHR160200 Cardamine hirsuta HOM05D007518 ORTHO05D008168 1.4e-28 131.0 162 68.5
HanXRQChr16g0530261 Helianthus annuus HOM05D007518 ORTHO05D008168 1.4e-28 131.0 140 76.4
PGSC0003DMG400017778 Solanum tuberosum HOM05D007518 ORTHO05D008168 4.1e-28 129.4 161 69.6
Nitab4.5_0016476g0010 Nicotiana tabacum HOM05D007518 ORTHO05D008168 7.0e-28 128.6 129 80.6
Ah.03g139360 Amaranthus hybridus HOM05D007518 ORTHO05D008168 9.1e-28 128.3 165 67.3
AUR62007988 Chenopodium quinoa HOM05D006571 ORTHO05D007771 1.6e-27 127.5 133 77.4
Lj2P450T11 Lonicera japonica HOM05D007518 ORTHO05D008168 3.5e-27 126.3 131 78.6
Actinidia12117 Actinidia chinensis HOM05D007518 ORTHO05D008168 4.5e-27 125.9 106 68.9
DCAR_021444 Daucus carota HOM05D007518 ORTHO05D008168 5.9e-27 125.6 132 77.3
Sc03g0000780 Simmondsia chinensis HOM05D007518 ORTHO05D008168 1.0e-26 124.8 156 69.9
Duzib187G0536 Durio zibethinus HOM05D007518 ORTHO05D008168 2.2e-26 123.6 102 67.6
ECA246G0481 Erigeron canadensis HOM05D000085 ORTHO05D000274 5.0e-26 122.5 149 70.5
Dinv26823 Davidia involucrata HOM05D002420 ORTHO05D002422 6.5e-26 122.1 163 68.1
Nitab4.5_0001038g0130 Nicotiana tabacum HOM05D007518 ORTHO05D008168 2.5e-25 120.2 129 77.5
Psat2g160680 Pisum sativum HOM05D007518 ORTHO05D008168 7.2e-25 118.6 120 84.2
SGA_v2.0_scaffold248G44914 Striga asiatica HOM05D007518 ORTHO05D008168 7.2e-25 118.6 159 68.6
Pp3c15_7720 Physcomitrium patens HOM05D007518 ORTHO05D008168 1.6e-24 117.5 164 62.2
Peaxi162Scf00751g00045 Petunia axillaris HOM05D007518 ORTHO05D008168 3.6e-24 116.3 129 63.6
Mapoly0168s0019 Marchantia polymorpha HOM05D007518 ORTHO05D008168 4.7e-24 115.9 157 65.6
unitig_62.g23458 Utricularia gibba HOM05D007518 ORTHO05D008168 2.6e-22 110.2 122 74.6
ATR0733G025 Amborella trichopoda HOM05D007518 ORTHO05D008168 2.8e-21 106.7 132 70.5
BcaB07g34066 Brassica carinata HOM05D007518 ORTHO05D008168 6.3e-21 105.5 163 51.5
SEGI_19868 Sequoiadendron giganteum HOM05D007518 ORTHO05D008168 2.4e-20 103.6 163 60.1
SMO361G0359 Selaginella moellendorffii HOM05D007518 ORTHO05D008168 3.1e-20 103.2 113 73.5
CBR_g37409 Chara braunii HOM05D007518 ORTHO05D008168 5.3e-20 102.4 123 44.7
BcaB07g34065 Brassica carinata HOM05D007518 ORTHO05D008168 7.0e-20 102.1 101 59.4
HPP92_023606 Vanilla planifolia HOM05D007518 ORTHO05D008168 1.0e-18 98.2 184 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2926 Anthoceros agrestis HOM05D007518 ORTHO05D008168 6.1e-16 89.0 126 69.0
Zm00001eb098970 Zea mays HOM05D007518 ORTHO05D008168 1.0e-15 88.2 124 67.7
Actinidia02774 Actinidia chinensis HOM05D007518 ORTHO05D008168 3.0e-15 86.7 130 46.9
PRCOL_00004191 Prasinoderma coloniale HOM05D007518 ORTHO05D008168 1.1e-12 78.2 119 64.7
unitig_65.g29889 Utricularia gibba HOM05D007518 ORTHO05D008168 7.0e-12 75.5 89 66.3
SMO361G0415 Selaginella moellendorffii HOM05D007518 ORTHO05D008168 2.0e-11 73.9 100 39.0
Cre01.g043200 Chlamydomonas reinhardtii HOM05D007518 ORTHO05D008168 5.0e-10 69.3 62 58.1
Os10g0213700 Oryza sativa ssp. japonica HOM05D007518 ORTHO05D008168 1.1e-09 68.2 124 62.9
MCO12G314 Micromonas commoda HOM05D007518 ORTHO05D008168 8.0e-08 62.0 60 53.3
Atru.chr4.788 Acer truncatum HOM05D007518 ORTHO05D008168 5.7e-06 55.8 33 81.8


User provided reference genes

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