Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004289 Carpinus fangiana HOM05D000273 ORTHO05D000069 2.9e-51 204.9 103 100.0
Cfa001894 Carpinus fangiana HOM05D000273 ORTHO05D000069 4.7e-49 197.6 102 97.1
Cfa013965 Carpinus fangiana HOM05D000273 ORTHO05D000069 4.0e-48 194.5 102 96.1
Cfa004210 Carpinus fangiana HOM05D000273 ORTHO05D000069 1.3e-46 189.5 102 94.1
Cfa016880 Carpinus fangiana HOM05D000194 ORTHO05D000069 3.4e-39 164.9 97 89.7
Haze_19925 Corylus avellana HOM05D000194 ORTHO05D000069 4.9e-38 161.0 97 87.6
Cfa018494 Carpinus fangiana HOM05D000500 ORTHO05D000367 1.1e-29 133.3 82 84.1
Cfa016016 Carpinus fangiana HOM05D000273 ORTHO05D000198 4.1e-29 131.3 83 83.1
CiPaw.10G029500 Carya illinoinensis HOM05D000194 ORTHO05D000069 7.8e-28 127.1 98 69.4
Cfa013916 Carpinus fangiana HOM05D007073 ORTHO05D008855 1.9e-26 122.5 77 80.5
CiPaw.09G033800 Carya illinoinensis HOM05D000194 ORTHO05D000069 4.3e-26 121.3 96 69.8
Cfa012215 Carpinus fangiana HOM05D000273 ORTHO05D000069 3.1e-24 115.2 64 89.1
Cfa006267 Carpinus fangiana HOM05D000273 ORTHO05D000069 8.9e-24 113.6 64 87.5
Cfa012493 Carpinus fangiana HOM05D000273 ORTHO05D000069 6.4e-22 107.5 73 78.1
Cpa.g.sc85.120 Carica papaya HOM05D000194 ORTHO05D000069 2.8e-17 92.0 100 57.0
QL07p022241 Quercus lobata HOM05D000194 ORTHO05D000069 3.6e-17 91.7 100 59.0
MELO3C009653.2 Cucumis melo HOM05D000194 ORTHO05D000069 4.8e-17 91.3 98 58.2
TWI77G0641 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 4.8e-17 91.3 97 54.6
ClCG10G017310 Citrullus lanatus HOM05D000194 ORTHO05D000069 6.2e-17 90.9 100 61.0
CsaV3_3G039100 Cucumis sativus L. HOM05D000194 ORTHO05D000069 6.2e-17 90.9 99 59.6
RcHm_v2.0_Chr3g0480751 Rosa chinensis HOM05D000194 ORTHO05D000069 2.4e-16 89.0 97 56.7
Hma1.2p1_0856F.1_g229080 Hydrangea macrophylla HOM05D000194 ORTHO05D000069 5.3e-16 87.8 98 52.0
Prupe.7G070200 Prunus persica HOM05D000194 ORTHO05D000069 2.0e-15 85.9 98 57.1
GSVIVG01033350001 Vitis vinifera HOM05D000194 ORTHO05D000069 2.0e-15 85.9 96 56.2
MD14G1064200 Malus domestica HOM05D000194 ORTHO05D000069 4.4e-15 84.7 100 54.0
TAR623G1219 Trochodendron aralioides HOM05D000194 ORTHO05D000069 4.4e-15 84.7 91 53.8
CANSAT80G1730 Cannabis sativa HOM05D000194 ORTHO05D000069 7.6e-15 84.0 98 56.1
Glyma.19G143900 Glycine max HOM05D000194 ORTHO05D000069 3.8e-14 81.6 87 59.8
Manes.08G047400 Manihot esculenta HOM05D000194 ORTHO05D000069 3.8e-14 81.6 101 52.5
arahy.Tifrunner.gnm1.ann1.VUQ1KR Arachis hypogaea HOM05D000194 ORTHO05D000069 8.4e-14 80.5 87 55.2
arahy.Tifrunner.gnm1.ann1.35WB4A Arachis hypogaea HOM05D000194 ORTHO05D000069 1.1e-13 80.1 87 55.2
Glyma.03G141200 Glycine max HOM05D000194 ORTHO05D000069 1.4e-13 79.7 98 54.1
Phvul.001G138200 Phaseolus vulgaris HOM05D000194 ORTHO05D000069 3.2e-13 78.6 96 53.1
Sed0003534 Sechium edule HOM05D000194 ORTHO05D000069 5.4e-13 77.8 98 51.0
VMungo1383G2350 Vigna mungo HOM05D000194 ORTHO05D000069 7.1e-13 77.4 84 60.7
Manes.09G030600 Manihot esculenta HOM05D000194 ORTHO05D000069 9.3e-13 77.0 103 53.4
TWI53G0530 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 1.2e-12 76.6 94 48.9
TAR369G0121 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.6e-12 76.3 92 48.9
Atru.chr1.946 Acer truncatum HOM05D000194 ORTHO05D000069 2.1e-12 75.9 103 52.4
MBI01_g40601_MAGBIO Magnolia biondii HOM05D000194 ORTHO05D000069 2.7e-12 75.5 94 56.4
Lj1g0022078 Lotus japonicus HOM05D000194 ORTHO05D000069 3.5e-12 75.1 95 51.6
TPR.G4765 Trifolium pratense HOM05D000194 ORTHO05D000069 7.8e-12 73.9 84 57.1
Psat3g070440 Pisum sativum HOM05D000194 ORTHO05D000069 1.7e-11 72.8 93 51.6
Carub.0005s2466 Capsella rubella HOM05D000194 ORTHO05D000069 3.9e-11 71.6 105 47.6
Ca_08492_v3 Cicer arietinum L. HOM05D000194 ORTHO05D000069 1.5e-10 69.7 84 57.1
Ca_30035_v3 Cicer arietinum L. HOM05D000194 ORTHO05D000069 1.5e-10 69.7 84 57.1
Thhalv10006040m.g Eutrema salsugineum HOM05D000194 ORTHO05D000069 1.5e-10 69.7 101 47.5
Sp5g04890 Schrenkiella parvula HOM05D000194 ORTHO05D000069 1.5e-10 69.7 111 45.0
Potri.016G051100 Populus trichocarpa HOM05D000194 ORTHO05D000069 1.9e-10 69.3 94 46.8
CDE04G0530 Ceratophyllum demersum HOM05D000194 ORTHO05D000069 2.5e-10 68.9 92 43.5
CDE06G0936 Ceratophyllum demersum HOM05D000194 ORTHO05D000069 2.5e-10 68.9 92 48.9
Lalb_Chr25g0287551 Lupinus albus HOM05D000194 ORTHO05D000069 2.5e-10 68.9 86 52.3
AL5G39470 Arabidopsis lyrata HOM05D000194 ORTHO05D000069 3.3e-10 68.6 103 47.6
BcaB02g08293 Brassica carinata HOM05D000194 ORTHO05D000069 3.3e-10 68.6 109 43.1
FAN02G1333 Fragaria x ananassa HOM05D000194 ORTHO05D000069 3.3e-10 68.6 97 50.5
Rhsim03G0010700 Rhododendron simsii HOM05D000194 ORTHO05D000069 3.3e-10 68.6 102 44.1
Ca_12120_v3 Cicer arietinum L. HOM05D000194 ORTHO05D000069 5.6e-10 67.8 93 52.7
Aa31LG10G12540 Aethionema arabicum HOM05D000194 ORTHO05D000069 7.3e-10 67.4 100 46.0
VMungo0720G2682 Vigna mungo HOM05D000194 ORTHO05D000069 7.3e-10 67.4 116 49.1
MD12G1063900 Malus domestica HOM05D000194 ORTHO05D000069 9.6e-10 67.0 102 46.1
Medtr7g092510 Medicago truncatula HOM05D000194 ORTHO05D000069 9.6e-10 67.0 99 46.5
Phvul.007G256800 Phaseolus vulgaris HOM05D000194 ORTHO05D000069 9.6e-10 67.0 114 47.4
AT3G57800 Arabidopsis thaliana HOM05D000194 ORTHO05D000069 1.3e-09 66.6 103 46.6
vmacro08023 Vaccinium macrocarpon HOM05D000194 ORTHO05D000069 2.8e-09 65.5 95 48.4
Medtr1g059270 Medicago truncatula HOM05D000194 ORTHO05D000069 3.6e-09 65.1 88 48.9
CDE07G0313 Ceratophyllum demersum HOM05D000194 ORTHO05D000069 4.8e-09 64.7 92 46.7
FAN14G1392 Fragaria x ananassa HOM05D000194 ORTHO05D000069 6.2e-09 64.3 97 50.5
Lalb_Chr20g0110991 Lupinus albus HOM05D000194 ORTHO05D000069 6.2e-09 64.3 95 48.4
A04p02900 Brassica napus HOM05D000194 ORTHO05D000069 8.1e-09 63.9 108 42.6
BraA04t16013Z Brassica rapa HOM05D000194 ORTHO05D000069 8.1e-09 63.9 108 42.6
Sabra06G0040300 Salix brachista HOM05D000194 ORTHO05D000069 8.1e-09 63.9 94 47.9
BcaC08g44869 Brassica carinata HOM05D000194 ORTHO05D000069 1.1e-08 63.5 108 42.6
FvH4_6g22930 Fragaria vesca HOM05D000194 ORTHO05D000069 1.4e-08 63.2 97 49.5
Sabra16G0054900 Salix brachista HOM05D000194 ORTHO05D000069 1.4e-08 63.2 94 43.6
DCAR_013568 Daucus carota HOM05D000194 ORTHO05D000069 1.8e-08 62.8 94 46.8
THA.LOC104802378 Tarenaya hassleriana HOM05D000194 ORTHO05D000069 1.8e-08 62.8 98 45.9
Sp4g24470 Schrenkiella parvula HOM05D000194 ORTHO05D000069 2.4e-08 62.4 97 43.3
FAN05G5106 Fragaria x ananassa HOM05D000194 ORTHO05D000069 3.1e-08 62.0 95 47.4
Actinidia09371 Actinidia chinensis HOM05D000194 ORTHO05D000069 4.0e-08 61.6 99 43.4
Sed0022117 Sechium edule HOM05D000194 ORTHO05D000069 4.0e-08 61.6 96 46.9
BcaC02g09962 Brassica carinata HOM05D000194 ORTHO05D000069 5.3e-08 61.2 108 43.5
C04p34560 Brassica napus HOM05D000194 ORTHO05D000069 5.3e-08 61.2 108 43.5
BolC4t25017H Brassica oleracea HOM05D000194 ORTHO05D000069 5.3e-08 61.2 108 43.5
FAN09G1002 Fragaria x ananassa HOM05D000194 ORTHO05D000069 6.9e-08 60.8 97 48.5
C06p24830 Brassica napus HOM05D000194 ORTHO05D000069 9.0e-08 60.5 108 40.7
COL.COLO4_28734 Corchorus olitorius HOM05D000194 ORTHO05D000069 9.0e-08 60.5 99 45.5
BolC6t37636H Brassica oleracea HOM05D000194 ORTHO05D000069 1.2e-07 60.1 108 41.7
Nn7g36116 Nelumbo nucifera HOM05D000194 ORTHO05D000069 1.2e-07 60.1 89 44.9
Psat6g072520 Pisum sativum HOM05D000194 ORTHO05D000069 1.2e-07 60.1 83 48.2
Actinidia20294 Actinidia chinensis HOM05D000194 ORTHO05D000069 1.5e-07 59.7 102 40.2
A07p23690 Brassica napus HOM05D000194 ORTHO05D000069 1.5e-07 59.7 109 42.2
CARHR168130 Cardamine hirsuta HOM05D000194 ORTHO05D000069 2.0e-07 59.3 115 43.5
Cfa014371 Carpinus fangiana HOM05D005981 ORTHO05D007551 2.0e-07 59.3 28 89.3
Ciclev10005087m.g Citrus clementina HOM05D000194 ORTHO05D000069 3.4e-07 58.5 135 37.8
Lalb_Chr01g0017591 Lupinus albus HOM05D000194 ORTHO05D000069 3.4e-07 58.5 100 45.0
arahy.Tifrunner.gnm1.ann1.Y3DHDC Arachis hypogaea HOM05D000194 ORTHO05D000069 4.5e-07 58.2 109 41.3
BraA07t30021Z Brassica rapa HOM05D000194 ORTHO05D000069 4.5e-07 58.2 107 42.1
Lj2A374G35 Lonicera japonica HOM05D000194 ORTHO05D000069 5.8e-07 57.8 92 43.5
Thecc.05G165300 Theobroma cacao HOM05D000194 ORTHO05D000069 5.8e-07 57.8 79 45.6
arahy.Tifrunner.gnm1.ann1.IJCM88 Arachis hypogaea HOM05D000194 ORTHO05D000069 7.6e-07 57.4 109 40.4
Aa31LG1G23990 Aethionema arabicum HOM05D000194 ORTHO05D000069 9.9e-07 57.0 102 44.1
Glyma.10G093600 Glycine max HOM05D000194 ORTHO05D000069 9.9e-07 57.0 83 47.0
AL4G40660 Arabidopsis lyrata HOM05D000194 ORTHO05D000069 1.3e-06 56.6 100 41.0
EL10Ac3g06983 Beta vulgaris HOM05D000194 ORTHO05D000069 1.3e-06 56.6 90 44.4
CSS0046332 Camellia sinensis var. sinensis HOM05D000194 ORTHO05D000069 1.3e-06 56.6 99 44.4
Carub.0004s2464 Capsella rubella HOM05D000194 ORTHO05D000069 1.3e-06 56.6 97 41.2
Oeu018019.1 Olea europaea HOM05D000194 ORTHO05D000069 1.3e-06 56.6 94 43.6
MBI04_g42668_MAGBIO Magnolia biondii HOM05D000194 ORTHO05D000069 1.7e-06 56.2 93 43.0
Potri.006G057200 Populus trichocarpa HOM05D000194 ORTHO05D000069 2.2e-06 55.8 94 42.6
AT2G42300 Arabidopsis thaliana HOM05D000194 ORTHO05D000069 4.9e-06 54.7 102 42.2
CARHR137340 Cardamine hirsuta HOM05D000194 ORTHO05D000069 4.9e-06 54.7 99 41.4
Gohir.A11G313800 Gossypium hirsutum HOM05D000194 ORTHO05D000069 4.9e-06 54.7 96 42.7
Duzib093G0141 Durio zibethinus HOM05D000194 ORTHO05D000069 6.4e-06 54.3 92 41.3
Gohir.D09G122100 Gossypium hirsutum HOM05D000194 ORTHO05D000069 8.4e-06 53.9 94 40.4
Gorai.006G139900 Gossypium raimondii HOM05D000194 ORTHO05D000069 8.4e-06 53.9 94 37.2


User provided reference genes

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