Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 1.6e-243 845.9 485 100.0
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 1.3e-229 799.7 485 93.4
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 1.6e-176 623.2 493 78.1
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 1.5e-161 573.5 492 69.3
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 1.7e-157 560.1 490 71.6
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 2.2e-157 559.7 485 72.4
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 7.9e-155 551.2 489 68.7
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 8.7e-154 547.7 487 67.6
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 9.7e-153 544.3 487 67.4
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.2e-152 543.1 491 66.4
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.4e-151 539.7 495 66.1
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 2.6e-150 536.2 494 69.8
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 2.3e-146 523.1 484 66.5
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.1e-145 520.8 494 63.4
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 2.6e-142 509.6 487 65.3
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 5.9e-142 508.4 491 65.8
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 3.2e-140 502.7 487 65.9
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 3.2e-140 502.7 489 67.7
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 2.1e-139 500.0 480 62.5
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.7e-139 499.6 489 62.8
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.8e-138 496.9 479 64.7
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 3.0e-138 496.1 487 63.0
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.1e-137 494.2 494 63.4
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.5e-137 493.8 494 63.4
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 2.0e-137 493.4 492 65.9
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.7e-136 489.2 494 62.3
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 4.8e-136 488.8 494 65.2
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.8e-135 486.9 486 62.8
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 3.1e-135 486.1 487 63.2
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 4.5e-134 482.3 494 64.2
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 7.7e-134 481.5 496 60.7
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.3e-133 480.7 494 64.0
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 2.9e-133 479.6 424 70.5
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 6.5e-133 478.4 484 64.0
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.5e-132 476.5 494 64.4
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 4.2e-132 475.7 492 60.4
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 9.4e-132 474.6 486 62.1
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 3.6e-131 472.6 535 58.9
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 8.0e-131 471.5 483 62.5
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 3.0e-130 469.5 481 60.9
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 3.9e-130 469.2 494 61.9
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 8.8e-130 468.0 490 59.4
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 3.3e-129 466.1 513 58.5
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 5.7e-129 465.3 505 60.2
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 2.2e-128 463.4 486 59.1
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 4.8e-128 462.2 490 61.6
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 8.2e-128 461.5 486 56.8
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 2.4e-127 459.9 529 59.4
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 2.4e-127 459.9 471 60.7
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 9.1e-127 458.0 491 61.7
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 9.1e-127 458.0 481 58.8
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 1.2e-126 457.6 484 61.4
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 1.6e-126 457.2 481 60.1
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 2.0e-126 456.8 491 57.8
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 2.0e-126 456.8 486 58.2
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 4.5e-126 455.7 591 53.5
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 5.0e-125 452.2 492 62.6
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 8.5e-125 451.4 494 61.3
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 1.5e-124 450.7 490 58.0
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 2.5e-124 449.9 494 62.6
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 4.2e-124 449.1 488 60.2
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 9.4e-124 448.0 486 61.5
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 2.1e-123 446.8 511 58.9
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 8.0e-123 444.9 500 60.0
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 1.0e-122 444.5 493 59.2
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 4.0e-122 442.6 486 58.2
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.2e-121 441.0 502 61.6
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 2.0e-121 440.3 486 59.1
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.0e-121 440.3 468 61.8
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 3.3e-121 439.5 491 60.5
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 4.4e-121 439.1 468 61.5
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 1.3e-120 437.6 502 58.2
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 6.3e-120 435.3 517 58.6
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 3.1e-119 433.0 501 60.7
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 7.0e-119 431.8 515 58.1
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 5.9e-118 428.7 487 60.0
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 2.2e-117 426.8 483 58.8
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.2e-115 421.0 483 61.7
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 4.0e-114 416.0 484 59.7
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.2e-113 414.5 508 57.9
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 2.6e-113 413.3 465 60.0
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 7.5e-113 411.8 507 56.2
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.3e-112 411.0 483 54.5
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 2.8e-112 409.8 490 58.8
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 3.7e-112 409.5 421 62.0
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 6.3e-112 408.7 487 58.1
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 2.7e-110 403.3 489 54.2
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.9e-109 399.8 486 55.8
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 3.8e-109 399.4 356 68.3
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 6.5e-109 398.7 521 54.7
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 1.5e-108 397.5 463 56.6
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 4.2e-108 396.0 504 54.8
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 8.0e-107 391.7 452 58.4
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.4e-106 391.0 482 53.5
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 1.8e-106 390.6 435 59.8
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 3.0e-106 389.8 504 52.0
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 5.2e-106 389.0 342 70.5
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.3e-104 384.4 400 56.8
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.4e-103 380.9 472 56.6
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 1.2e-102 377.9 489 53.0
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.7e-101 374.0 477 54.7
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 2.3e-101 373.6 476 57.8
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 3.8e-101 372.9 483 57.1
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 3.8e-101 372.9 466 53.4
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 3.3e-100 369.8 562 47.5
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 4.7e-99 365.9 532 47.0
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 7.5e-97 358.6 476 54.2
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 1.4e-95 354.4 480 55.0
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 2.0e-94 350.5 482 52.5
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 3.5e-94 349.7 473 55.2
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.3e-93 347.8 477 53.5
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 3.3e-92 343.2 483 54.5
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 2.1e-91 340.5 486 54.3
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 4.6e-86 322.8 270 68.5
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 8.6e-85 318.5 508 50.0
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 1.5e-84 317.8 410 56.8
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 8.9e-82 308.5 494 46.8
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 9.9e-81 305.1 249 73.9
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 8.3e-80 302.0 479 47.8
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 5.4e-79 299.3 264 66.7
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 3.6e-75 286.6 502 45.0
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 2.6e-73 280.4 287 60.6
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 3.8e-72 276.6 494 41.9
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 5.3e-66 256.1 418 46.2
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 3.8e-64 250.0 409 48.2
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 4.2e-63 246.5 475 42.1
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.7e-61 241.1 299 60.9
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.8e-50 204.5 474 35.4
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 8.7e-45 185.7 423 33.6
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.5e-41 174.9 271 45.4
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 2.5e-39 167.5 183 55.7
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 1.1e-36 158.7 404 35.4
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 6.7e-29 132.9 113 60.2
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.3e-27 128.6 442 31.4
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 5.3e-26 123.2 192 48.4
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 2.6e-25 120.9 76 77.6
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 7.7e-25 119.4 311 34.4
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 2.9e-24 117.5 67 80.6
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 7.2e-23 112.8 170 52.9
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.6e-22 110.5 100 62.0
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 7.9e-22 109.4 185 44.3
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 1.8e-21 108.2 87 57.5
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 4.8e-19 100.1 178 42.7
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 1.8e-18 98.2 398 25.1
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.8e-18 98.2 207 38.6
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 3.1e-18 97.4 154 40.9
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 3.5e-17 94.0 191 41.9
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 1.2e-14 85.5 82 58.5
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 3.6e-14 84.0 139 43.2
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 6.7e-13 79.7 260 38.1
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 6.7e-13 79.7 191 39.8
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.6e-12 77.8 155 47.1
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 5.3e-10 70.1 321 28.0
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 5.3e-10 70.1 106 44.3
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 2.0e-09 68.2 70 48.6
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 4.5e-09 67.0 318 25.2
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 3.2e-07 60.8 107 43.9
Cre06.g280800 Chlamydomonas reinhardtii HOM05D004401 ORTHO05D005169 1.6e-06 58.5 435 26.4


User provided reference genes

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