Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004182 Carpinus fangiana HOM05D006418 ORTHO05D008063 1.9e-175 619.0 295 100.0
CiPaw.01G053600 Carya illinoinensis HOM05D006418 ORTHO05D008063 4.2e-159 564.7 295 90.2
TAR375G0873 Trochodendron aralioides HOM05D006418 ORTHO05D008063 2.7e-158 562.0 295 87.8
Lj3g0006580 Lotus japonicus HOM05D006418 ORTHO05D008063 2.3e-157 558.9 295 88.8
MD07G1128500 Malus domestica HOM05D006418 ORTHO05D008063 2.3e-157 558.9 295 87.5
Glyma.03G017600 Glycine max HOM05D006418 ORTHO05D008063 6.7e-157 557.4 295 88.8
GSVIVG01027527001 Vitis vinifera HOM05D006418 ORTHO05D008063 1.5e-156 556.2 293 87.0
arahy.Tifrunner.gnm1.ann1.K1NG1D Arachis hypogaea HOM05D006418 ORTHO05D008063 7.4e-156 553.9 295 88.5
Dinv32422 Davidia involucrata HOM05D006418 ORTHO05D008063 9.7e-156 553.5 295 86.8
Potri.002G153100 Populus trichocarpa HOM05D006418 ORTHO05D008063 1.7e-155 552.7 295 85.8
TPR.G17586 Trifolium pratense HOM05D006418 ORTHO05D008063 1.7e-155 552.7 295 87.5
Lalb_Chr10g0097531 Lupinus albus HOM05D006418 ORTHO05D008063 2.8e-155 552.0 295 88.1
Hma1.2p1_0033F.1_g020630 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 4.8e-155 551.2 294 86.4
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 6.3e-155 550.8 295 85.8
Actinidia38288 Actinidia chinensis HOM05D006418 ORTHO05D008063 1.1e-154 550.1 294 87.1
Aqoxy5G03975 Aquilegia oxysepala HOM05D006418 ORTHO05D008063 1.4e-154 549.7 294 85.0
Duzib138G1515 Durio zibethinus HOM05D006418 ORTHO05D008063 1.8e-154 549.3 295 86.1
Nn1g01350 Nelumbo nucifera HOM05D006418 ORTHO05D008063 2.4e-154 548.9 295 85.4
RcHm_v2.0_Chr1g0352261 Rosa chinensis HOM05D006418 ORTHO05D008063 3.1e-154 548.5 295 86.4
FvH4_7g13130 Fragaria vesca HOM05D006418 ORTHO05D008063 5.3e-154 547.7 295 86.4
FAN06G0540 Fragaria x ananassa HOM05D006418 ORTHO05D008063 5.3e-154 547.7 295 86.4
FAN06G3976 Fragaria x ananassa HOM05D006418 ORTHO05D008063 5.3e-154 547.7 295 86.4
Sabra02G0121400 Salix brachista HOM05D006418 ORTHO05D008063 5.3e-154 547.7 295 85.1
TWI59G1449 Tripterygium wilfordii HOM05D006418 ORTHO05D008063 6.9e-154 547.4 295 85.1
VMungo0331G0376 Vigna mungo HOM05D006418 ORTHO05D008063 6.9e-154 547.4 295 87.5
Rhsim07G0021100 Rhododendron simsii HOM05D006418 ORTHO05D008063 2.0e-153 545.8 295 86.4
vmacro13338 Vaccinium macrocarpon HOM05D006418 ORTHO05D008063 2.6e-153 545.4 295 85.8
FAN01G2003 Fragaria x ananassa HOM05D006418 ORTHO05D008063 4.5e-153 544.7 295 85.4
FAN03G2411 Fragaria x ananassa HOM05D006418 ORTHO05D008063 7.7e-153 543.9 295 85.8
Ciclev10021113m.g Citrus clementina HOM05D006418 ORTHO05D008063 1.0e-152 543.5 295 84.7
FAN10G2923 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.0e-152 543.5 295 85.8
Gorai.007G095100 Gossypium raimondii HOM05D006418 ORTHO05D008063 1.7e-152 542.7 295 84.4
Eucgr.E00217 Eucalyptus grandis HOM05D006418 ORTHO05D008063 3.8e-152 541.6 295 83.7
CANSAT56G2190 Cannabis sativa HOM05D006418 ORTHO05D008063 5.0e-152 541.2 295 84.7
COL.COLO4_12625 Corchorus olitorius HOM05D006418 ORTHO05D008063 1.1e-151 540.0 295 84.1
Gohir.D11G089100 Gossypium hirsutum HOM05D006418 ORTHO05D008063 1.4e-151 539.7 295 84.1
Lj7A519G38 Lonicera japonica HOM05D006418 ORTHO05D008063 1.4e-151 539.7 295 85.1
CiPaw.01G023800 Carya illinoinensis HOM05D006418 ORTHO05D008063 1.9e-151 539.3 297 86.2
THA.LOC104827683 Tarenaya hassleriana HOM05D006418 ORTHO05D008063 3.2e-151 538.5 295 84.7
ClCG05G001910 Citrullus lanatus HOM05D006418 ORTHO05D008063 5.5e-151 537.7 292 85.6
PGR042G1311 Punica granatum HOM05D006418 ORTHO05D008063 5.5e-151 537.7 295 85.4
Medtr8g032700 Medicago truncatula HOM05D006418 ORTHO05D008063 1.2e-150 536.6 295 85.8
Ca_23755_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 3.6e-150 535.0 295 84.7
Nitab4.5_0010430g0060 Nicotiana tabacum HOM05D006418 ORTHO05D008063 4.7e-150 534.6 295 83.7
Peaxi162Scf00021g00525 Petunia axillaris HOM05D006418 ORTHO05D008063 6.1e-150 534.3 295 83.7
Phvul.010G092700 Phaseolus vulgaris HOM05D006418 ORTHO05D008063 7.9e-150 533.9 295 85.8
ECA236G1148 Erigeron canadensis HOM05D006418 ORTHO05D008063 3.9e-149 531.6 295 84.4
Cc02_g37230 Coffea canephora HOM05D006418 ORTHO05D008063 6.7e-149 530.8 295 83.7
Aa31LG10G15180 Aethionema arabicum HOM05D006418 ORTHO05D008063 1.5e-148 529.6 295 83.7
PGSC0003DMG400017054 Solanum tuberosum HOM05D006418 ORTHO05D008063 2.0e-148 529.3 295 83.1
Sopen01g037560 Solanum pennellii HOM05D006418 ORTHO05D008063 3.3e-148 528.5 295 82.7
Carub.0005s2773 Capsella rubella HOM05D006418 ORTHO05D008063 4.4e-148 528.1 295 84.7
EL10Ac1g00963 Beta vulgaris HOM05D006418 ORTHO05D008063 1.7e-147 526.2 292 83.6
Solyc01g091780.4 Solanum lycopersicum HOM05D006418 ORTHO05D008063 1.7e-147 526.2 295 82.4
DCAR_025170 Daucus carota HOM05D006418 ORTHO05D008063 2.2e-147 525.8 300 82.3
AL5G43290 Arabidopsis lyrata HOM05D006418 ORTHO05D008063 3.7e-147 525.0 295 83.1
CAN.G170.50 Capsicum annuum HOM05D006418 ORTHO05D008063 4.8e-147 524.6 295 83.1
CARHR171390 Cardamine hirsuta HOM05D006418 ORTHO05D008063 4.8e-147 524.6 295 83.4
AT3G61080 Arabidopsis thaliana HOM05D006418 ORTHO05D008063 8.2e-147 523.9 295 82.7
Thhalv10006098m.g Eutrema salsugineum HOM05D006418 ORTHO05D008063 8.2e-147 523.9 295 82.7
HanXRQChr06g0169031 Helianthus annuus HOM05D006418 ORTHO05D008063 1.1e-146 523.5 295 82.4
Hund27325 Selenicereus undatus HOM05D006418 ORTHO05D008063 7.0e-146 520.8 295 81.4
PSO063G7157 Papaver somniferum HOM05D006418 ORTHO05D008063 2.6e-145 518.8 295 81.0
Migut.B01688 Erythranthe guttata HOM05D006418 ORTHO05D008063 5.9e-145 517.7 295 82.7
Sp5g02280 Schrenkiella parvula HOM05D006418 ORTHO05D008063 5.0e-144 514.6 295 81.4
Nitab4.5_0004550g0130 Nicotiana tabacum HOM05D006418 ORTHO05D008063 1.1e-143 513.5 306 80.1
BcaB02g07390 Brassica carinata HOM05D006418 ORTHO05D008063 1.9e-143 512.7 295 82.0
BcaC08g45098 Brassica carinata HOM05D006418 ORTHO05D008063 4.2e-143 511.5 295 82.4
ATR0757G200 Amborella trichopoda HOM05D006418 ORTHO05D008063 1.2e-142 510.0 294 79.6
MELO3C006151.2 Cucumis melo HOM05D006418 ORTHO05D008063 2.3e-141 505.8 334 74.3
C06p27060 Brassica napus HOM05D006418 ORTHO05D008063 5.2e-141 504.6 302 80.5
BolC6t37878H Brassica oleracea HOM05D006418 ORTHO05D008063 5.2e-141 504.6 302 80.5
A07p25300 Brassica napus HOM05D006418 ORTHO05D008063 8.8e-141 503.8 302 79.8
BraA07t30173Z Brassica rapa HOM05D006418 ORTHO05D008063 1.1e-140 503.4 302 79.5
Os03g0117800 Oryza sativa ssp. japonica HOM05D006418 ORTHO05D008063 5.7e-140 501.1 295 78.0
SalBow3G2367 Salvia bowleyana HOM05D006418 ORTHO05D008063 9.7e-140 500.4 295 79.7
Zm00001eb001200 Zea mays HOM05D006418 ORTHO05D008063 2.2e-139 499.2 292 78.1
HPP92_014577 Vanilla planifolia HOM05D006418 ORTHO05D008063 8.2e-139 497.3 295 78.0
Manes.01G262400 Manihot esculenta HOM05D006418 ORTHO05D008063 5.7e-132 474.6 248 87.5
Prupe.2G154600 Prunus persica HOM05D006418 ORTHO05D008063 5.3e-130 468.0 241 89.2
Psat4g151800 Pisum sativum HOM05D006418 ORTHO05D008063 1.1e-127 460.3 246 85.4
CsaV3_3G009310 Cucumis sativus L. HOM05D006418 ORTHO05D008063 7.2e-127 457.6 241 86.7
Thecc.01G368600 Theobroma cacao HOM05D006418 ORTHO05D008063 1.2e-126 456.8 252 83.7
SGA_v2.0_scaffold95G28870 Striga asiatica HOM05D006418 ORTHO05D008063 1.8e-125 453.0 306 74.8
Atru.chr5.403 Acer truncatum HOM05D006418 ORTHO05D008063 5.2e-125 451.4 238 85.7
CDE01G0065 Ceratophyllum demersum HOM05D006418 ORTHO05D008063 6.8e-125 451.1 260 77.7
Sed0024588 Sechium edule HOM05D006418 ORTHO05D008063 5.4e-122 441.4 241 84.2
Lsat_1_v5_gn_7_8501 Lactuca sativa HOM05D006418 ORTHO05D008063 2.0e-121 439.5 263 77.9
AUR62004291 Chenopodium quinoa HOM05D006418 ORTHO05D008063 1.3e-120 436.8 247 81.4
Mapoly0138s0005 Marchantia polymorpha HOM05D006418 ORTHO05D008063 1.3e-120 436.8 292 69.9
Oeu024416.1 Olea europaea HOM05D006418 ORTHO05D008063 3.6e-118 428.7 258 79.5
AagrBONN_evm.TU.Sc2ySwM_344.2134 Anthoceros agrestis HOM05D006418 ORTHO05D008063 1.4e-117 426.8 289 68.5
QL08p050652 Quercus lobata HOM05D006418 ORTHO05D008063 2.0e-116 422.9 223 88.3
Pp3c15_5030 Physcomitrium patens HOM05D006418 ORTHO05D008063 2.6e-116 422.5 289 67.8
CBR_g38943 Chara braunii HOM05D006418 ORTHO05D008063 3.1e-114 415.6 286 66.8
SMO356G0133 Selaginella moellendorffii HOM05D006418 ORTHO05D008063 5.2e-109 398.3 291 63.6
Cpa.g.sc18.197 Carica papaya HOM05D006418 ORTHO05D008063 2.6e-108 396.0 215 86.5
unitig_22.g5367 Utricularia gibba HOM05D006418 ORTHO05D008063 4.9e-99 365.2 204 81.4
Cc02_g37660 Coffea canephora HOM05D006418 ORTHO05D008063 3.5e-97 359.0 208 80.3
Gohir.A11G085000 Gossypium hirsutum HOM05D006418 ORTHO05D008063 7.8e-97 357.8 182 87.4
Hma1.2p1_0033F.1_g020640 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 2.6e-92 342.8 256 68.0
MBI12_g25033_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 1.7e-91 340.1 220 71.8
SEGI_14549 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 2.3e-72 276.6 170 74.1
Haze_15226 Corylus avellana HOM05D006418 ORTHO05D008063 4.0e-69 265.8 133 97.0
MCO14G366 Micromonas commoda HOM05D006418 ORTHO05D008063 1.3e-67 260.8 296 48.6
Cre12.g542202 Chlamydomonas reinhardtii HOM05D006418 ORTHO05D008063 2.9e-67 259.6 278 48.6
Sc26g0001060 Simmondsia chinensis HOM05D001335 ORTHO05D001184 1.1e-61 241.1 174 70.1
arahy.Tifrunner.gnm1.ann1.N7AMXP Arachis hypogaea HOM05D006418 ORTHO05D008063 2.0e-60 236.9 133 85.7
FAN10G0301 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.3e-54 217.6 164 65.9
PRCOL_00000121 Prasinoderma coloniale HOM05D006418 ORTHO05D008063 5.8e-52 208.8 295 41.7
Glyma.07G078900 Glycine max HOM05D006418 ORTHO05D008063 5.0e-43 179.1 148 68.2
Pp3c1_6480 Physcomitrium patens HOM05D006418 ORTHO05D008063 6.5e-43 178.7 277 37.5
Sabra14G0055300 Salix brachista HOM05D006418 ORTHO05D008063 3.2e-42 176.4 248 42.3
Sc26g0001070 Simmondsia chinensis HOM05D006418 ORTHO05D008063 5.1e-40 169.1 133 66.9
Gohir.A11G084900 Gossypium hirsutum HOM05D006418 ORTHO05D008063 5.7e-39 165.6 95 83.2
Ca_28970_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 7.2e-34 148.7 280 34.6
ATR0620G127 Amborella trichopoda HOM05D006418 ORTHO05D008063 2.4e-29 133.7 161 45.3
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 2.9e-27 126.7 277 31.8
unitig_22.g5366 Utricularia gibba HOM05D003447 ORTHO05D003967 7.2e-18 95.5 57 78.9
Cc00_g22860 Coffea canephora HOM05D006418 ORTHO05D008063 3.0e-16 90.1 57 73.7
CiPaw.01G052800 Carya illinoinensis HOM05D006418 ORTHO05D008063 2.6e-15 87.0 49 83.7
Actinidia27830 Actinidia chinensis HOM05D006418 ORTHO05D008063 1.6e-12 77.8 41 82.9
MBI16_g15528_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 1.0e-11 75.1 42 78.6
SEGI_36912 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 1.2e-09 68.2 49 61.2
MBI11_g05318_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-07 61.2 30 90.0
SEGI_18314 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 2.8e-06 57.0 25 92.0


User provided reference genes

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