Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 4.2e-44 181.0 95 100.0
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 2.3e-42 175.3 95 97.9
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 2.0e-41 172.2 95 95.8
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 2.0e-41 172.2 95 95.8
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 1.8e-39 165.6 95 90.5
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.3e-34 148.7 95 81.1
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.0e-33 145.6 95 78.9
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 3.3e-33 144.8 92 77.2
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 5.7e-33 144.1 95 77.9
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 1.3e-32 142.9 95 76.8
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.3e-32 142.9 95 77.9
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 1.7e-32 142.5 95 76.8
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 1.7e-32 142.5 94 83.0
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 1.7e-32 142.5 95 75.8
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 2.2e-32 142.1 95 80.0
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 2.8e-32 141.7 96 76.0
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 8.2e-32 140.2 96 79.2
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 8.2e-32 140.2 95 77.9
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 1.4e-31 139.4 95 74.7
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 1.4e-31 139.4 95 78.9
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 1.4e-31 139.4 95 73.7
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 2.4e-31 138.7 96 78.1
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 2.4e-31 138.7 95 77.9
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 4.1e-31 137.9 95 74.7
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 4.1e-31 137.9 86 80.2
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 4.1e-31 137.9 85 80.0
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 5.3e-31 137.5 95 73.7
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 5.3e-31 137.5 94 80.9
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 5.3e-31 137.5 95 75.8
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 7.0e-31 137.1 97 76.3
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 9.1e-31 136.7 96 77.1
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 1.6e-30 136.0 95 77.9
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 2.0e-30 135.6 95 74.7
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 2.6e-30 135.2 95 75.8
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 3.5e-30 134.8 95 73.7
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 1.0e-29 133.3 97 74.2
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 1.0e-29 133.3 95 75.8
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 1.7e-29 132.5 95 73.7
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 1.7e-29 132.5 102 75.5
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 2.2e-29 132.1 96 71.9
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 3.8e-29 131.3 102 73.5
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 1.1e-28 129.8 95 67.4
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 1.5e-28 129.4 93 76.3
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 1.9e-28 129.0 95 68.4
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.9e-28 129.0 95 68.4
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 5.5e-28 127.5 95 67.4
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 5.5e-28 127.5 95 67.4
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 7.2e-28 127.1 91 74.7
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 2.7e-27 125.2 96 68.8
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 4.7e-27 124.4 92 72.8
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 6.1e-27 124.0 94 70.2
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 1.8e-26 122.5 95 66.3
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 1.8e-26 122.5 95 67.4
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.3e-26 122.1 100 63.0
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 3.0e-26 121.7 96 68.8
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 3.0e-26 121.7 95 67.4
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 6.7e-26 120.6 101 66.3
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.7e-26 120.6 95 67.4
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 6.7e-26 120.6 96 68.8
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.5e-25 119.4 95 66.3
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.5e-25 119.4 95 66.3
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 1.5e-25 119.4 95 67.4
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 4.4e-25 117.9 104 68.3
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 5.7e-25 117.5 105 65.7
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 7.5e-25 117.1 102 67.6
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 9.7e-25 116.7 102 64.7
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 9.7e-25 116.7 102 62.7
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 1.7e-24 115.9 105 64.8
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 2.2e-24 115.5 102 60.8
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 2.8e-24 115.2 97 66.0
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 3.7e-24 114.8 76 77.6
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 3.7e-24 114.8 102 61.8
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 3.7e-24 114.8 95 64.2
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 3.7e-24 114.8 105 63.8
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 6.3e-24 114.0 101 60.4
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.1e-23 113.2 102 67.6
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 1.4e-23 112.8 102 62.7
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 2.4e-23 112.1 100 59.0
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 4.1e-23 111.3 103 62.1
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 4.1e-23 111.3 104 60.6
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.1e-23 111.3 85 70.6
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 7.0e-23 110.5 101 61.4
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.2e-22 109.8 102 57.8
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 2.0e-22 109.0 106 58.5
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 2.0e-22 109.0 97 64.9
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 2.7e-22 108.6 104 57.7
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 3.5e-22 108.2 105 63.8
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 5.9e-22 107.5 95 63.2
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 5.9e-22 107.5 104 58.7
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 7.7e-22 107.1 103 60.2
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 1.0e-21 106.7 72 76.4
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 1.3e-21 106.3 104 58.7
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 1.7e-21 105.9 83 66.3
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 1.7e-21 105.9 101 59.4
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 1.7e-21 105.9 102 60.8
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 1.7e-21 105.9 103 60.2
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.7e-21 105.9 107 61.7
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 2.2e-21 105.5 104 62.5
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 2.9e-21 105.1 102 62.7
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 3.8e-21 104.8 92 64.1
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 3.8e-21 104.8 106 58.5
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 3.8e-21 104.8 105 60.0
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 3.8e-21 104.8 105 61.0
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 5.0e-21 104.4 105 58.1
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 5.0e-21 104.4 105 59.0
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 6.5e-21 104.0 90 63.3
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.1e-20 103.2 106 54.7
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 1.1e-20 103.2 93 62.4
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.5e-20 102.8 106 56.6
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 1.9e-20 102.4 96 60.4
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 2.5e-20 102.1 105 59.0
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 3.2e-20 101.7 95 63.2
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 3.2e-20 101.7 102 59.8
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 4.2e-20 101.3 96 58.3
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 4.2e-20 101.3 105 59.0
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 5.5e-20 100.9 96 59.4
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.2e-19 99.8 96 59.4
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.6e-19 99.4 96 57.3
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.6e-19 99.4 96 57.3
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 3.6e-19 98.2 96 59.4
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 3.6e-19 98.2 99 58.6
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 3.6e-19 98.2 99 58.6
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 4.7e-19 97.8 95 61.1
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 4.7e-19 97.8 80 70.0
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.0e-18 96.7 96 57.3
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 1.0e-18 96.7 76 63.2
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.8e-18 95.9 96 57.3
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 4.0e-18 94.7 96 59.4
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 4.0e-18 94.7 103 59.2
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 5.2e-18 94.4 96 57.3
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 5.2e-18 94.4 96 56.2
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 6.8e-18 94.0 101 53.5
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 8.8e-18 93.6 98 56.1
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 1.2e-17 93.2 84 61.9
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 1.2e-17 93.2 97 56.7
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 1.2e-17 93.2 97 56.7
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 1.2e-17 93.2 97 56.7
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 1.5e-17 92.8 97 54.6
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 1.5e-17 92.8 97 55.7
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 1.5e-17 92.8 97 55.7
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 1.5e-17 92.8 99 55.6
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 2.0e-17 92.4 97 55.7
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 2.0e-17 92.4 97 55.7
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 2.0e-17 92.4 97 55.7
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 2.0e-17 92.4 83 57.8
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 2.6e-17 92.0 97 55.7
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 2.6e-17 92.0 97 55.7
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 3.4e-17 91.7 103 54.4
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 3.4e-17 91.7 97 54.6
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 3.4e-17 91.7 96 55.2
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 4.4e-17 91.3 96 56.2
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 4.4e-17 91.3 100 59.0
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 7.5e-17 90.5 95 53.7
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 1.3e-16 89.7 97 55.7
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 1.3e-16 89.7 97 55.7
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.7e-16 89.4 95 53.7
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 2.2e-16 89.0 96 54.2
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 2.2e-16 89.0 97 54.6
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 2.2e-16 89.0 97 54.6
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 2.2e-16 89.0 95 56.8
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 2.8e-16 88.6 96 54.2
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 3.7e-16 88.2 81 65.4
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 6.3e-16 87.4 97 53.6
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 6.3e-16 87.4 97 53.6
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 6.3e-16 87.4 105 53.3
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 8.3e-16 87.0 97 53.6
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.8e-15 85.9 95 52.6
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 2.4e-15 85.5 88 56.8
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 4.1e-15 84.7 82 58.5
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 4.1e-15 84.7 82 58.5
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 5.4e-15 84.3 82 58.5
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 1.2e-14 83.2 74 54.1
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 5.0e-13 77.8 82 54.9
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 5.0e-13 77.8 82 54.9
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 5.0e-13 77.8 80 58.8
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 6.5e-13 77.4 82 54.9
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 8.6e-13 77.0 82 53.7
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 3.2e-12 75.1 84 50.0
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 1.2e-11 73.2 91 47.3
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 1.6e-11 72.8 84 51.2
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 1.4e-10 69.7 84 46.4
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 2.3e-10 68.9 84 46.4
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 3.4e-09 65.1 56 51.8
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 5.7e-09 64.3 76 55.3
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 3.7e-08 61.6 66 50.0
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 4.5e-06 54.7 62 56.5


User provided reference genes

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